{"id":"https://openalex.org/W3087202564","doi":"https://doi.org/10.1371/journal.pcbi.1009291","title":"Review of machine learning methods for RNA secondary structure prediction","display_name":"Review of machine learning methods for RNA secondary structure prediction","publication_year":2021,"publication_date":"2021-08-26","ids":{"openalex":"https://openalex.org/W3087202564","doi":"https://doi.org/10.1371/journal.pcbi.1009291","mag":"3087202564","pmid":"https://pubmed.ncbi.nlm.nih.gov/34437528"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009291","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009291","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009291&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009291&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100365846","display_name":"Qi Zhao","orcid":"https://orcid.org/0000-0002-7981-9478"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Zhao","raw_affiliation_strings":["College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-7981-9478","affiliations":[{"raw_affiliation_string":"College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073799091","display_name":"Zheng Zhao","orcid":"https://orcid.org/0000-0002-4214-8164"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Zhao","raw_affiliation_strings":["School of Information Science and Technology, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-4214-8164","affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055305202","display_name":"Xiaoya Fan","orcid":"https://orcid.org/0000-0002-5002-6968"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoya Fan","raw_affiliation_strings":["School of Software, Key Laboratory for Ubiquitous Network and Service Software of Liaoning Province, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-5002-6968","affiliations":[{"raw_affiliation_string":"School of Software, Key Laboratory for Ubiquitous Network and Service Software of Liaoning Province, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034492707","display_name":"Zhengwei Yuan","orcid":"https://orcid.org/0000-0003-0967-9462"},"institutions":[{"id":"https://openalex.org/I91656880","display_name":"China Medical University","ror":"https://ror.org/032d4f246","country_code":"CN","type":"education","lineage":["https://openalex.org/I91656880"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengwei Yuan","raw_affiliation_strings":["Key Laboratory of Health Ministry for Congenital Malformation, Shengjing Hospital of China Medical University, Shenyang, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0003-0967-9462","affiliations":[{"raw_affiliation_string":"Key Laboratory of Health Ministry for Congenital Malformation, Shengjing Hospital of China Medical University, Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I91656880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115605004","display_name":"Qian Mao","orcid":"https://orcid.org/0000-0002-9539-2064"},"institutions":[{"id":"https://openalex.org/I118803816","display_name":"Liaoning University","ror":"https://ror.org/03xpwj629","country_code":"CN","type":"education","lineage":["https://openalex.org/I118803816"]},{"id":"https://openalex.org/I49232843","display_name":"Changchun University","ror":"https://ror.org/02an57k10","country_code":"CN","type":"education","lineage":["https://openalex.org/I49232843"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qian Mao","raw_affiliation_strings":["College of Light Industry, Liaoning University, Shenyang, Liaoning, China","Key Laboratory of Agroproducts Processing Technology, Changchun University, Changchun, Jilin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Light Industry, Liaoning University, Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I118803816"]},{"raw_affiliation_string":"Key Laboratory of Agroproducts Processing Technology, Changchun University, Changchun, Jilin, China","institution_ids":["https://openalex.org/I49232843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021827481","display_name":"Yudong Yao","orcid":"https://orcid.org/0000-0003-3868-0593"},"institutions":[{"id":"https://openalex.org/I108468826","display_name":"Stevens Institute of Technology","ror":"https://ror.org/02z43xh36","country_code":"US","type":"education","lineage":["https://openalex.org/I108468826"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yudong Yao","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, New Jersey, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, New Jersey, United States of America","institution_ids":["https://openalex.org/I108468826"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021827481"],"corresponding_institution_ids":["https://openalex.org/I108468826"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":5.774,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.97483065,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"17","issue":"8","first_page":"e1009291","last_page":"e1009291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.6892678141593933},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5921929478645325},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5887771248817444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5632444620132446},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5189533233642578},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.49899911880493164},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4638097286224365},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44192513823509216},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4064043164253235},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.326318621635437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15412193536758423},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12248465418815613}],"concepts":[{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.6892678141593933},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5921929478645325},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5887771248817444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5632444620132446},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5189533233642578},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.49899911880493164},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4638097286224365},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44192513823509216},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4064043164253235},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.326318621635437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15412193536758423},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12248465418815613},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1009291","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009291","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009291&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34437528","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34437528","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:2009.08868","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2009.08868","pdf_url":"https://arxiv.org/pdf/2009.08868","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1009291","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009291","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:e660cd4533794647a001cf8ba2f46d01","is_oa":true,"landing_page_url":"https://doaj.org/article/e660cd4533794647a001cf8ba2f46d01","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 8, p e1009291 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8389396","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8389396","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009291","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009291","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009291&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2352825166","display_name":null,"funder_award_id":"LQN202002","funder_id":"https://openalex.org/F4320333688","funder_display_name":"National Outstanding Youth Science Fund Project of National Natural Science Foundation of China"},{"id":"https://openalex.org/G3980320803","display_name":null,"funder_award_id":"82232019","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4860991864","display_name":null,"funder_award_id":"81871219","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G55857174","display_name":null,"funder_award_id":"62002056","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6360253738","display_name":null,"funder_award_id":"31801623","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327404","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53"},{"id":"https://openalex.org/F4320333688","display_name":"National Outstanding Youth Science Fund Project of National Natural Science Foundation of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3087202564.pdf","grobid_xml":"https://content.openalex.org/works/W3087202564.grobid-xml"},"referenced_works_count":157,"referenced_works":["https://openalex.org/W124086387","https://openalex.org/W166206240","https://openalex.org/W573845210","https://openalex.org/W1494641947","https://openalex.org/W1507969153","https://openalex.org/W1577392641","https://openalex.org/W1605441808","https://openalex.org/W1725615870","https://openalex.org/W1861164398","https://openalex.org/W1901616594","https://openalex.org/W1965077482","https://openalex.org/W1965243792","https://openalex.org/W1967538502","https://openalex.org/W1968455698","https://openalex.org/W1969476076","https://openalex.org/W1970977492","https://openalex.org/W1972533328","https://openalex.org/W1973290333","https://openalex.org/W1975390562","https://openalex.org/W1980410097","https://openalex.org/W1981576666","https://openalex.org/W1984987205","https://openalex.org/W1988409793","https://openalex.org/W1988884185","https://openalex.org/W1989454102","https://openalex.org/W1989949418","https://openalex.org/W1990529500","https://openalex.org/W1999955287","https://openalex.org/W2000076692","https://openalex.org/W2000191287","https://openalex.org/W2001307989","https://openalex.org/W2001916877","https://openalex.org/W2002712867","https://openalex.org/W2003066928","https://openalex.org/W2006936482","https://openalex.org/W2009818318","https://openalex.org/W2014599804","https://openalex.org/W2017302704","https://openalex.org/W2018838912","https://openalex.org/W2020546070","https://openalex.org/W2023206235","https://openalex.org/W2025763720","https://openalex.org/W2030621748","https://openalex.org/W2031352989","https://openalex.org/W2036643266","https://openalex.org/W2038253050","https://openalex.org/W2038598202","https://openalex.org/W2039746015","https://openalex.org/W2040015982","https://openalex.org/W2041882488","https://openalex.org/W2043020016","https://openalex.org/W2045777307","https://openalex.org/W2045895660","https://openalex.org/W2046335009","https://openalex.org/W2051713039","https://openalex.org/W2052080622","https://openalex.org/W2052538065","https://openalex.org/W2053579091","https://openalex.org/W2056655623","https://openalex.org/W2058510025","https://openalex.org/W2060718478","https://openalex.org/W2066444035","https://openalex.org/W2067258168","https://openalex.org/W2068205681","https://openalex.org/W2071883352","https://openalex.org/W2074882547","https://openalex.org/W2076756368","https://openalex.org/W2086561953","https://openalex.org/W2094253263","https://openalex.org/W2094386736","https://openalex.org/W2098571862","https://openalex.org/W2099145028","https://openalex.org/W2099468911","https://openalex.org/W2101918096","https://openalex.org/W2102017611","https://openalex.org/W2102046276","https://openalex.org/W2102854598","https://openalex.org/W2104141342","https://openalex.org/W2104846587","https://openalex.org/W2106293441","https://openalex.org/W2106478835","https://openalex.org/W2108852439","https://openalex.org/W2109638684","https://openalex.org/W2117431427","https://openalex.org/W2123241418","https://openalex.org/W2125126793","https://openalex.org/W2134453550","https://openalex.org/W2136288913","https://openalex.org/W2137283579","https://openalex.org/W2137640371","https://openalex.org/W2141157874","https://openalex.org/W2141351700","https://openalex.org/W2141601045","https://openalex.org/W2146721220","https://openalex.org/W2146997097","https://openalex.org/W2151821392","https://openalex.org/W2158381555","https://openalex.org/W2159117141","https://openalex.org/W2159548583","https://openalex.org/W2162224067","https://openalex.org/W2166706771","https://openalex.org/W2167301014","https://openalex.org/W2169011786","https://openalex.org/W2170747616","https://openalex.org/W2171396485","https://openalex.org/W2172206224","https://openalex.org/W2172459784","https://openalex.org/W2259938310","https://openalex.org/W2304056734","https://openalex.org/W2342878844","https://openalex.org/W2378866283","https://openalex.org/W2414122243","https://openalex.org/W2522325651","https://openalex.org/W2536860838","https://openalex.org/W2540061010","https://openalex.org/W2596417560","https://openalex.org/W2623110508","https://openalex.org/W2725568163","https://openalex.org/W2759571676","https://openalex.org/W2766234835","https://openalex.org/W2767701940","https://openalex.org/W2783814264","https://openalex.org/W2805813392","https://openalex.org/W2808896479","https://openalex.org/W2866340037","https://openalex.org/W2919479895","https://openalex.org/W2945901478","https://openalex.org/W2949563312","https://openalex.org/W2951298881","https://openalex.org/W2954102902","https://openalex.org/W2954432347","https://openalex.org/W2964303497","https://openalex.org/W2990528340","https://openalex.org/W2995183626","https://openalex.org/W2996658914","https://openalex.org/W2998238598","https://openalex.org/W2999155565","https://openalex.org/W3005909538","https://openalex.org/W3014154699","https://openalex.org/W3040132961","https://openalex.org/W3093392187","https://openalex.org/W3098223552","https://openalex.org/W3102721470","https://openalex.org/W3104537585","https://openalex.org/W3105982350","https://openalex.org/W3107483306","https://openalex.org/W3110739375","https://openalex.org/W3124802662","https://openalex.org/W3126773939","https://openalex.org/W3135161193","https://openalex.org/W4210631930","https://openalex.org/W4240153261","https://openalex.org/W4245270879","https://openalex.org/W6636160900","https://openalex.org/W6996882120","https://openalex.org/W7043596421","https://openalex.org/W7052815726"],"related_works":["https://openalex.org/W3047450301","https://openalex.org/W2558432341","https://openalex.org/W1975806245","https://openalex.org/W1472344963","https://openalex.org/W4318218930","https://openalex.org/W2057388609","https://openalex.org/W2159621058","https://openalex.org/W2581348958","https://openalex.org/W2412575231","https://openalex.org/W4385457841"],"abstract_inverted_index":{"Secondary":[0],"structure":[1,67,95,124],"plays":[2],"an":[3],"important":[4,109],"role":[5],"in":[6,56,111,118],"determining":[7],"the":[8,44,48,57,62,82,107,119],"function":[9],"of":[10,19,50,65,92,106,121],"noncoding":[11],"RNAs.":[12],"Hence,":[13],"identifying":[14],"RNA":[15,32,66,93,122],"secondary":[16,33,94,123],"structures":[17],"is":[18,26],"great":[20],"value":[21],"to":[22],"research.":[23],"Computational":[24],"prediction":[25,52,96,125],"a":[27,89,103],"mainstream":[28],"approach":[29],"for":[30],"predicting":[31],"structure.":[34],"Unfortunately,":[35],"even":[36],"though":[37],"new":[38,69],"methods":[39,53,70,97,110],"have":[40,80],"been":[41],"proposed":[42],"over":[43],"past":[45],"40":[46],"years,":[47],"performance":[49],"computational":[51],"has":[54],"stagnated":[55],"last":[58],"decade.":[59],"Recently,":[60],"with":[61],"increasing":[63],"availability":[64],"data,":[68],"based":[71,98],"on":[72,99],"machine":[73],"learning":[74],"(ML)":[75],"technologies,":[76],"especially":[77],"deep":[78],"learning,":[79],"alleviated":[81],"issue.":[83],"In":[84],"this":[85,112],"review,":[86],"we":[87],"provide":[88],"comprehensive":[90],"overview":[91],"ML":[100],"technologies":[101],"and":[102,126],"tabularized":[104],"summary":[105],"most":[108],"field.":[113],"The":[114],"current":[115],"pending":[116],"challenges":[117],"field":[120],"future":[127],"trends":[128],"are":[129],"also":[130],"discussed.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":29},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":34}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
