{"id":"https://openalex.org/W3191637716","doi":"https://doi.org/10.1371/journal.pcbi.1009227","title":"Relating simulation studies by provenance\u2014Developing a family of Wnt signaling models","display_name":"Relating simulation studies by provenance\u2014Developing a family of Wnt signaling models","publication_year":2021,"publication_date":"2021-08-05","ids":{"openalex":"https://openalex.org/W3191637716","doi":"https://doi.org/10.1371/journal.pcbi.1009227","mag":"3191637716","pmid":"https://pubmed.ncbi.nlm.nih.gov/34351901"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009227","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009227","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009227&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009227&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002063485","display_name":"Kai Budde","orcid":"https://orcid.org/0000-0001-6836-9865"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Kai Budde","raw_affiliation_strings":["Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6836-9865","affiliations":[{"raw_affiliation_string":"Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042177546","display_name":"Jacob Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I106938459","display_name":"University of New Brunswick","ror":"https://ror.org/05nkf0n29","country_code":"CA","type":"education","lineage":["https://openalex.org/I106938459"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jacob Smith","raw_affiliation_strings":["Faculty of Computer Science, University of New Brunswick, Fredericton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, University of New Brunswick, Fredericton, Canada","institution_ids":["https://openalex.org/I106938459"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021312368","display_name":"Pia Wilsdorf","orcid":"https://orcid.org/0000-0001-7447-6667"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pia Wilsdorf","raw_affiliation_strings":["Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7447-6667","affiliations":[{"raw_affiliation_string":"Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090554724","display_name":"Fiete Haack","orcid":"https://orcid.org/0000-0003-3713-8313"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fiete Haack","raw_affiliation_strings":["Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3713-8313","affiliations":[{"raw_affiliation_string":"Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063515034","display_name":"Adelinde M. Uhrmacher","orcid":"https://orcid.org/0000-0001-5256-4682"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adelinde M. Uhrmacher","raw_affiliation_strings":["Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5256-4682","affiliations":[{"raw_affiliation_string":"Institute for Visual and Analytic Computing, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002063485"],"corresponding_institution_ids":["https://openalex.org/I4665924"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.1102,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.7695688,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"17","issue":"8","first_page":"e1009227","last_page":"e1009227"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.953000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9502999782562256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7519264817237854},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5888801217079163},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.560877799987793},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.5442401170730591},{"id":"https://openalex.org/keywords/simulation-modeling","display_name":"Simulation modeling","score":0.524706244468689},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5188921093940735},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.4671138525009155},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4608269929885864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3386446237564087},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.2751118540763855},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2324267029762268},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12670305371284485},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1257648766040802}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7519264817237854},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5888801217079163},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.560877799987793},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.5442401170730591},{"id":"https://openalex.org/C108215451","wikidata":"https://www.wikidata.org/wiki/Q7263963","display_name":"Simulation modeling","level":2,"score":0.524706244468689},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5188921093940735},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.4671138525009155},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4608269929885864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3386446237564087},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2751118540763855},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2324267029762268},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12670305371284485},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1257648766040802},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C175444787","wikidata":"https://www.wikidata.org/wiki/Q39072","display_name":"Microeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1009227","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009227","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009227&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34351901","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34351901","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:5774682ad6014f3e9b72a7f581b2d14f","is_oa":true,"landing_page_url":"https://doaj.org/article/5774682ad6014f3e9b72a7f581b2d14f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 8, p e1009227 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8407594","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8407594","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009227","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009227","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009227&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5199999809265137,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1082567029","display_name":"Automatische Generierung und Ausf\u00fchrung von Simulationsexperimenten","funder_award_id":"320435134","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1373060938","display_name":null,"funder_award_id":"57467143","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G2584305167","display_name":null,"funder_award_id":"SFB 1270/1-299150580","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6179961035","display_name":"SFB 1270: ELektrisch Aktive ImplaNtatE \u2013 ELAINE","funder_award_id":"299150580","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G799411231","display_name":null,"funder_award_id":"SFB 1270","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8306713558","display_name":null,"funder_award_id":"SFB 1270/1\u2014299150580","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G841595664","display_name":null,"funder_award_id":"SFB 1270/1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8637772092","display_name":null,"funder_award_id":"1270/1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3191637716.pdf","grobid_xml":"https://content.openalex.org/works/W3191637716.grobid-xml"},"referenced_works_count":114,"referenced_works":["https://openalex.org/W135306462","https://openalex.org/W269919247","https://openalex.org/W836474583","https://openalex.org/W1480035004","https://openalex.org/W1557541313","https://openalex.org/W1569248486","https://openalex.org/W1589685702","https://openalex.org/W1906647448","https://openalex.org/W1966824782","https://openalex.org/W1971196026","https://openalex.org/W1973493635","https://openalex.org/W1974143589","https://openalex.org/W1974828057","https://openalex.org/W1981587357","https://openalex.org/W1983350265","https://openalex.org/W1983649960","https://openalex.org/W1986397618","https://openalex.org/W1994751336","https://openalex.org/W1996984755","https://openalex.org/W1997875983","https://openalex.org/W2006006356","https://openalex.org/W2006419043","https://openalex.org/W2011835017","https://openalex.org/W2012986637","https://openalex.org/W2018458363","https://openalex.org/W2020561965","https://openalex.org/W2023332291","https://openalex.org/W2031369606","https://openalex.org/W2032112650","https://openalex.org/W2039126460","https://openalex.org/W2042880070","https://openalex.org/W2056536660","https://openalex.org/W2060200034","https://openalex.org/W2065191902","https://openalex.org/W2068329746","https://openalex.org/W2069157810","https://openalex.org/W2069704514","https://openalex.org/W2071953960","https://openalex.org/W2086320165","https://openalex.org/W2089840306","https://openalex.org/W2091643574","https://openalex.org/W2093911514","https://openalex.org/W2096951208","https://openalex.org/W2108654247","https://openalex.org/W2112597064","https://openalex.org/W2113777491","https://openalex.org/W2115070712","https://openalex.org/W2117330555","https://openalex.org/W2119284420","https://openalex.org/W2126714704","https://openalex.org/W2131448225","https://openalex.org/W2140094325","https://openalex.org/W2140862057","https://openalex.org/W2145435867","https://openalex.org/W2146750548","https://openalex.org/W2150306925","https://openalex.org/W2150908245","https://openalex.org/W2152246075","https://openalex.org/W2155933095","https://openalex.org/W2158021558","https://openalex.org/W2160003033","https://openalex.org/W2160751597","https://openalex.org/W2163740253","https://openalex.org/W2164554210","https://openalex.org/W2164712741","https://openalex.org/W2167437179","https://openalex.org/W2170619426","https://openalex.org/W2171913567","https://openalex.org/W2171926758","https://openalex.org/W2179501783","https://openalex.org/W2230370003","https://openalex.org/W2267602015","https://openalex.org/W2302501749","https://openalex.org/W2317767119","https://openalex.org/W2495930261","https://openalex.org/W2515307843","https://openalex.org/W2526123986","https://openalex.org/W2578084038","https://openalex.org/W2597995360","https://openalex.org/W2604713509","https://openalex.org/W2765869690","https://openalex.org/W2770364859","https://openalex.org/W2773787581","https://openalex.org/W2782924432","https://openalex.org/W2783507655","https://openalex.org/W2787596386","https://openalex.org/W2788254992","https://openalex.org/W2792314241","https://openalex.org/W2794900708","https://openalex.org/W2805309434","https://openalex.org/W2807744179","https://openalex.org/W2889978278","https://openalex.org/W2891801194","https://openalex.org/W2909957393","https://openalex.org/W2916847377","https://openalex.org/W2934450419","https://openalex.org/W2947076742","https://openalex.org/W2970732621","https://openalex.org/W2988361147","https://openalex.org/W2999805930","https://openalex.org/W3010022274","https://openalex.org/W3038928812","https://openalex.org/W3041421316","https://openalex.org/W3044779240","https://openalex.org/W3080314885","https://openalex.org/W3082588733","https://openalex.org/W3109974373","https://openalex.org/W3120967110","https://openalex.org/W3150912884","https://openalex.org/W4230563465","https://openalex.org/W4235333795","https://openalex.org/W4237992927","https://openalex.org/W4241340390","https://openalex.org/W6735926645"],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2106424170","https://openalex.org/W1985426483","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2010935248","https://openalex.org/W2768810474"],"abstract_inverted_index":{"For":[0],"many":[1],"biological":[2],"systems,":[3],"a":[4,43,65,89,97,130,140,182,227,250,255,281],"variety":[5],"of":[6,64,76,100,132,151,217,225,257,266,280,290],"simulation":[7,12,66,93,124,183,190,240,252,271,296],"models":[8,191,197,219,241],"exist.":[9],"A":[10,27],"new":[11,251],"model":[13,35,228,253],"is":[14,31,136,220,232],"rarely":[15],"developed":[16],"from":[17,122],"scratch,":[18],"but":[19],"rather":[20],"revises":[21],"and":[22,46,57,109,126,145,168,180,230,238,260,269,284],"extends":[23],"an":[24,38,233],"existing":[25,258],"one.":[26],"key":[28],"challenge,":[29],"however,":[30],"to":[32,54,61,116,176,194,248,263],"decide":[33],"which":[34],"might":[36],"be":[37],"appropriate":[39],"starting":[40],"point":[41],"for":[42,92,143,213,236],"particular":[44],"problem":[45],"why.":[47],"To":[48],"answer":[49],"this":[50,245],"question,":[51],"we":[52,69,105],"need":[53],"identify":[55,106],"entities":[56,108,155],"activities":[58,110,174],"that":[59,187,275,285],"contributed":[60],"the":[62,71,77,119,154,205,209,218,264,288],"development":[63,265],"model.":[67,184],"Therefore,":[68],"exploit":[70],"provenance":[72,120,147,291],"data":[73],"model,":[74],"PROV-DM,":[75],"World":[78],"Wide":[79],"Web":[80],"Consortium":[81],"and,":[82],"building":[83],"on":[84,96],"previous":[85],"work,":[86],"continue":[87],"developing":[88,226],"PROV":[90],"ontology":[91],"studies.":[94],"Based":[95],"case":[98],"study":[99],"19":[101],"Wnt/\u03b2-catenin":[102],"signaling":[103],"models,":[104],"crucial":[107],"as":[111,113,171,173],"well":[112,172],"useful":[114],"metadata":[115],"both":[117],"capture":[118],"information":[121,246],"individual":[123],"studies":[125],"relate":[127],"these":[128,202,223],"forming":[129],"family":[131,256],"models.":[133,203,272,297],"The":[134],"approach":[135,277],"implemented":[137],"in":[138],"WebProv,":[139],"web":[141],"application":[142],"inserting":[144],"querying":[146],"information.":[148],"Our":[149],"specialization":[150],"PROV-DM":[152],"contains":[153],"Research":[156],"Question,":[157],"Assumption,":[158],"Requirement,":[159],"Qualitative":[160],"Model,":[161,163],"Simulation":[162,164,166],"Experiment,":[165],"Data,":[167],"Wet-lab":[169,210],"Data":[170,211],"referring":[175],"building,":[177],"calibrating,":[178],"validating,":[179],"analyzing":[181],"We":[185,273],"show":[186],"most":[188],"Wnt":[189,196],"are":[192],"connected":[193],"other":[195],"by":[198],"using":[199],"(parts":[200],"of)":[201],"However,":[204],"overlap,":[206],"especially":[207],"regarding":[208],"used":[212],"calibration":[214],"or":[215,294],"validation":[216],"small.":[221],"Making":[222],"aspects":[224],"explicit":[229],"queryable":[231],"important":[234],"step":[235],"assessing":[237],"reusing":[239],"more":[242,267],"effectively.":[243],"Exposing":[244],"helps":[247],"integrate":[249],"within":[254],"ones":[259],"may":[261],"lead":[262],"robust":[268],"valid":[270],"hope":[274],"our":[276],"becomes":[278],"part":[279],"standardization":[282],"effort":[283],"modelers":[286],"adopt":[287],"benefits":[289],"when":[292],"considering":[293],"creating":[295]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
