{"id":"https://openalex.org/W3193603947","doi":"https://doi.org/10.1371/journal.pcbi.1009226","title":"Ten simple rules for creating reusable pathway models for computational analysis and visualization","display_name":"Ten simple rules for creating reusable pathway models for computational analysis and visualization","publication_year":2021,"publication_date":"2021-08-19","ids":{"openalex":"https://openalex.org/W3193603947","doi":"https://doi.org/10.1371/journal.pcbi.1009226","mag":"3193603947","pmid":"https://pubmed.ncbi.nlm.nih.gov/34411100"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009226","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009226","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009226&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009226&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063972221","display_name":"Kristina Hanspers","orcid":"https://orcid.org/0000-0001-5410-599X"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristina Hanspers","raw_affiliation_strings":["Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, California, United States of America","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062841937","display_name":"Martina Kutmon","orcid":null},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martina Kutmon","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088503440","display_name":"Susan L. Coort","orcid":"https://orcid.org/0000-0003-1224-9690"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Susan L. Coort","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059247283","display_name":"Daniela Digles","orcid":"https://orcid.org/0000-0001-5934-3559"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Daniela Digles","raw_affiliation_strings":["Department of Pharmaceutical Sciences, Division of Pharmaceutical Sciences, University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, Division of Pharmaceutical Sciences, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023993925","display_name":"Lauren J. Dupuis","orcid":"https://orcid.org/0000-0003-2606-3045"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lauren J. Dupuis","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061353760","display_name":"Friederike Ehrhart","orcid":"https://orcid.org/0000-0002-7770-620X"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Friederike Ehrhart","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082410210","display_name":"Finterly Hu","orcid":"https://orcid.org/0000-0002-8416-4533"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Finterly Hu","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041567966","display_name":"\u00c9lisson Nogueira Lopes","orcid":"https://orcid.org/0000-0003-1661-6304"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Elisson N. Lopes","raw_affiliation_strings":["Instituto de Ciencias Biologicas, Departamento de Bioquimica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto de Ciencias Biologicas, Departamento de Bioquimica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046933371","display_name":"Marvin Martens","orcid":"https://orcid.org/0000-0003-2230-0840"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marvin Martens","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046940436","display_name":"Nhung Pham","orcid":"https://orcid.org/0000-0003-3091-3962"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Nhung Pham","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026812944","display_name":"Woosub Shin","orcid":"https://orcid.org/0000-0002-2319-2960"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Woosub Shin","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071903823","display_name":"Denise Slenter","orcid":"https://orcid.org/0000-0001-8449-1318"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Denise N. Slenter","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048705669","display_name":"Andra Waagmeester","orcid":"https://orcid.org/0000-0001-9773-4008"},"institutions":[{"id":"https://openalex.org/I4210135156","display_name":"Terumo (Belgium)","ror":"https://ror.org/043vk3t22","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210119124","https://openalex.org/I4210135156"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Andra Waagmeester","raw_affiliation_strings":["Micelio, Antwerp, Belgium"],"affiliations":[{"raw_affiliation_string":"Micelio, Antwerp, Belgium","institution_ids":["https://openalex.org/I4210135156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060194743","display_name":"Egon Willighagen","orcid":"https://orcid.org/0000-0001-7542-0286"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Egon L. Willighagen","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060151962","display_name":"Laurent Winckers","orcid":"https://orcid.org/0000-0002-9454-4783"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Laurent A. Winckers","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075750072","display_name":"Chris T. Evelo","orcid":"https://orcid.org/0000-0002-5301-3142"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Chris T. Evelo","raw_affiliation_strings":["Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Department of Bioinformatics\u2014BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070456387","display_name":"Alexander R. Pico","orcid":"https://orcid.org/0000-0001-5706-2163"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexander R. Pico","raw_affiliation_strings":["Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, California, United States of America","institution_ids":["https://openalex.org/I1321430492"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5070456387"],"corresponding_institution_ids":["https://openalex.org/I1321430492"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.7893,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.85681873,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"17","issue":"8","first_page":"e1009226","last_page":"e1009226"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9372249841690063},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.800798773765564},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7823425531387329},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5840327739715576},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5648060441017151},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5633420348167419},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5603313446044922},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.49666911363601685},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4851456582546234},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.44709038734436035},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.436138391494751},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42484748363494873},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3272280991077423},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3039688467979431},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.30043500661849976},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.2622755169868469},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21562933921813965},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12075352668762207}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9372249841690063},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.800798773765564},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7823425531387329},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5840327739715576},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5648060441017151},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5633420348167419},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5603313446044922},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49666911363601685},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4851456582546234},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.44709038734436035},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.436138391494751},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42484748363494873},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3272280991077423},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3039688467979431},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.30043500661849976},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.2622755169868469},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21562933921813965},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12075352668762207},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1009226","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009226","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009226&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34411100","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34411100","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/1a0da63d-f961-495f-a22b-a12350855c99","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/1a0da63d-f961-495f-a22b-a12350855c99","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hanspers, K, Kutmon, M, Coort, S L, Digles, D, Dupuis, L J, Ehrhart, F, Hu, F T, Lopes, E N, Martens, M, Pham, N, Shin, W, Slenter, D N, Waagmeester, A, Willighagen, E L, Winckers, L A, Evelo, C T & Pico, A R 2021, 'Ten simple rules for creating reusable pathway models for computational analysis and visualization', PLoS Computational Biology, vol. 17, no. 8, e1009226. https://doi.org/10.1371/journal.pcbi.1009226","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:dc155313ce6c42099a50913eca2d7ae0","is_oa":true,"landing_page_url":"https://doaj.org/article/dc155313ce6c42099a50913eca2d7ae0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 8, p e1009226 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8375987","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8375987","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009226","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009226","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009226&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1561967769","display_name":"Qualitative Analysis of Cognitive and Interpersonal Aspects of Doctor-Patient Communication: The case of antibiotics prescription","funder_award_id":"104300","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G1973324782","display_name":"Agonie religieuse et transfiguration politique du jans\u00e9nisme au XVIIIe si\u00e8cle.","funder_award_id":"20100","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G2596381685","display_name":"'Liberals and Antifascists. History of PLRDT 1926-1946'.","funder_award_id":"100039","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3235976129","display_name":null,"funder_award_id":"R01GM089820","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3286132104","display_name":null,"funder_award_id":"R01 GM100039","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3320360883","display_name":"Sprachkultur und B\u00fcrgertum im 19. Jahrhundert. Ein Beitrag zur Sozial- und Mentalit\u00e4tsgeschichte der deutschen Sprache","funder_award_id":"43001","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3527855270","display_name":null,"funder_award_id":"731032","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3867839912","display_name":"Edition critique de la correspondance de Th\u00e9odore de B\u00e8ze","funder_award_id":"120100","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3989820144","display_name":null,"funder_award_id":"GM089820","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4198684376","display_name":null,"funder_award_id":"R01GM100039","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4532220648","display_name":null,"funder_award_id":"863059","funder_id":"https://openalex.org/F4320338343","funder_display_name":"H2020 Food"},{"id":"https://openalex.org/G4949545371","display_name":null,"funder_award_id":"R01 GM089820","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5463744445","display_name":null,"funder_award_id":"10430012010015","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G5670321549","display_name":"Mat\u00e9riel optique et microthermom\u00e9trique pour des recherches m\u00e9tallog\u00e9n\u00e9tiques","funder_award_id":"31075","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G6191052459","display_name":null,"funder_award_id":"731032","funder_id":"https://openalex.org/F4320338338","funder_display_name":"H2020 Research Infrastructures"},{"id":"https://openalex.org/G6630878955","display_name":"Image de la Suisse et strat\u00e9gie indirecte","funder_award_id":"10430","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G685019798","display_name":null,"funder_award_id":"681002","funder_id":"https://openalex.org/F4320338342","funder_display_name":"H2020 Health"},{"id":"https://openalex.org/G7206094169","display_name":null,"funder_award_id":"GM100039","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7613597313","display_name":null,"funder_award_id":"681002","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7853248445","display_name":null,"funder_award_id":"731075","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G786477916","display_name":null,"funder_award_id":"731075","funder_id":"https://openalex.org/F4320338338","funder_display_name":"H2020 Research Infrastructures"},{"id":"https://openalex.org/G7941628531","display_name":null,"funder_award_id":"863059","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8072353257","display_name":"Beitr\u00e4ge zur Chemie und Biochemie pflanzlicher Photorezeptoren, Synthesen neuartiger Pyrrol-Farbstoffe","funder_award_id":"25575","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8285986087","display_name":null,"funder_award_id":"825575","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8975055903","display_name":null,"funder_award_id":"825575","funder_id":"https://openalex.org/F4320338342","funder_display_name":"H2020 Health"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320321007","display_name":"ZonMw","ror":"https://ror.org/01yaj9a77"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320338338","display_name":"H2020 Research Infrastructures","ror":null},{"id":"https://openalex.org/F4320338342","display_name":"H2020 Health","ror":null},{"id":"https://openalex.org/F4320338343","display_name":"H2020 Food","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3193603947.pdf","grobid_xml":"https://content.openalex.org/works/W3193603947.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1871096589","https://openalex.org/W1935434993","https://openalex.org/W1940385398","https://openalex.org/W1969709265","https://openalex.org/W1983398365","https://openalex.org/W1989277387","https://openalex.org/W1999758530","https://openalex.org/W2001955602","https://openalex.org/W2003199491","https://openalex.org/W2009453329","https://openalex.org/W2025668835","https://openalex.org/W2043764521","https://openalex.org/W2044257395","https://openalex.org/W2045478141","https://openalex.org/W2052250375","https://openalex.org/W2063280109","https://openalex.org/W2102899487","https://openalex.org/W2115742152","https://openalex.org/W2117306286","https://openalex.org/W2130410032","https://openalex.org/W2145435867","https://openalex.org/W2148866288","https://openalex.org/W2149441684","https://openalex.org/W2150420891","https://openalex.org/W2159092541","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2163993275","https://openalex.org/W2166138679","https://openalex.org/W2173732482","https://openalex.org/W2302501749","https://openalex.org/W2337774877","https://openalex.org/W2464278521","https://openalex.org/W2749464300","https://openalex.org/W2755745675","https://openalex.org/W2773787581","https://openalex.org/W2782809175","https://openalex.org/W2794274454","https://openalex.org/W2798055326","https://openalex.org/W2898440040","https://openalex.org/W2898458979","https://openalex.org/W2900044275","https://openalex.org/W2900255713","https://openalex.org/W2900353268","https://openalex.org/W2900359059","https://openalex.org/W2900569176","https://openalex.org/W2901125500","https://openalex.org/W2952944698","https://openalex.org/W2953632535","https://openalex.org/W2973876835","https://openalex.org/W2980048930","https://openalex.org/W2981350712","https://openalex.org/W2988361147","https://openalex.org/W3004938578","https://openalex.org/W3011511325","https://openalex.org/W3018688604","https://openalex.org/W3047366767","https://openalex.org/W3092520281","https://openalex.org/W3101791085","https://openalex.org/W3102147110","https://openalex.org/W3112600195","https://openalex.org/W3122515804","https://openalex.org/W3136308181","https://openalex.org/W3136918052","https://openalex.org/W4230735861","https://openalex.org/W4231487765","https://openalex.org/W4237335579","https://openalex.org/W4294216483","https://openalex.org/W6661344633","https://openalex.org/W6785918294","https://openalex.org/W6806115372","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2128782793","https://openalex.org/W2981332207","https://openalex.org/W2146744007","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2100525485","https://openalex.org/W2150908245","https://openalex.org/W2211443823","https://openalex.org/W2043776573"],"abstract_inverted_index":{"Pathway":[0],"models":[1],"are":[2],"an":[3,113],"effective":[4],"way":[5],"to":[6,35,42,117],"capture":[7],"and":[8,32,40,56,63,78,91,103,115,126],"share":[9],"our":[10,72],"current":[11],"understanding":[12],"of":[13,25,58,61],"biological":[14,28,75],"processes.":[15],"A":[16],"pathway":[17,119],"model":[18],"is":[19],"defined":[20],"here":[21,110],"as":[22,112],"a":[23,36,44],"set":[24],"interactions":[26],"among":[27],"entities":[29],"(e.g.,":[30],"proteins":[31],"metabolites)":[33],"relevant":[34],"particular":[37,45],"context,":[38],"curated":[39],"organized":[41],"illustrate":[43],"process.":[46],"Properly":[47],"modeled":[48],"pathways":[49],"can":[50,87],"be":[51,88],"used":[52],"in":[53,82,96],"the":[54,99,118],"analysis":[55],"visualization":[57],"diverse":[59],"types":[60],"omics":[62],"other":[64,94],"biomedical":[65],"data":[66,84],"The":[67,107],"modeling":[68,120],"process":[69],"involves":[70],"taking":[71],"knowledge":[73,95],"about":[74],"pathways-however":[76],"messy":[77],"incompleteand":[79],"encoding":[80],"it":[81],"standardized":[83],"formats":[85],"that":[86],"shared,":[89],"reused,":[90],"synthesized":[92],"with":[93,98],"accordance":[97],"Findable,":[100],"Accessible,":[101],"Interoperable,":[102],"Reusable":[104],"(FAIR)":[105],"principles":[106],"rules":[108],"presented":[109],"serve":[111],"introduction":[114],"guide":[116],"process,":[121],"leveraging":[122],"freely":[123],"available":[124],"tools":[125],"resources.":[127]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":6}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
