{"id":"https://openalex.org/W3187466590","doi":"https://doi.org/10.1371/journal.pcbi.1009224","title":"Evaluation and comparison of multi-omics data integration methods for cancer subtyping","display_name":"Evaluation and comparison of multi-omics data integration methods for cancer subtyping","publication_year":2021,"publication_date":"2021-08-12","ids":{"openalex":"https://openalex.org/W3187466590","doi":"https://doi.org/10.1371/journal.pcbi.1009224","mag":"3187466590","pmid":"https://pubmed.ncbi.nlm.nih.gov/34383739"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009224","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009224","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009224&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009224&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050730968","display_name":"Ran Duan","orcid":"https://orcid.org/0000-0003-2927-3857"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ran Duan","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0003-2927-3857","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060109811","display_name":"Lin Gao","orcid":"https://orcid.org/0000-0001-6396-0787"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lin Gao","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0001-6396-0787","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047429226","display_name":"Yong Gao","orcid":"https://orcid.org/0000-0001-6135-1259"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I822440","display_name":"Okanagan University College","ror":"https://ror.org/02mxmh518","country_code":"CA","type":"education","lineage":["https://openalex.org/I822440"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yong Gao","raw_affiliation_strings":["Department of Computer Science, The University of British Columbia Okanagan, Kelowna, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of British Columbia Okanagan, Kelowna, British Columbia, Canada","institution_ids":["https://openalex.org/I822440","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101942108","display_name":"Yuxuan Hu","orcid":"https://orcid.org/0000-0002-8830-6893"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxuan Hu","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100659725","display_name":"Xu Han","orcid":"https://orcid.org/0000-0003-2932-9646"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Xu","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0003-2932-9646","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101461405","display_name":"Mingfeng Huang","orcid":"https://orcid.org/0000-0001-8576-2001"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingfeng Huang","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0001-8576-2001","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045215760","display_name":"Kuo Song","orcid":null},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kuo Song","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100721351","display_name":"Hongda Wang","orcid":"https://orcid.org/0000-0003-4266-9012"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongda Wang","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101079661","display_name":"Yongqiang Dong","orcid":"https://orcid.org/0000-0002-9861-4224"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongqiang Dong","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019717114","display_name":"Chaoqun Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaoqun Jiang","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038826336","display_name":"Chenxing Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenxing Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023927466","display_name":"Songwei Jia","orcid":"https://orcid.org/0000-0003-2514-8020"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songwei Jia","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5060109811"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.5128,"has_fulltext":true,"cited_by_count":119,"citation_normalized_percentile":{"value":0.97854837,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"17","issue":"8","first_page":"e1009224","last_page":"e1009224"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.9664415717124939},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7190003395080566},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6129906177520752},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5909534692764282},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5680503249168396},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.4923194646835327},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4670851230621338},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4663708806037903},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4654700458049774},{"id":"https://openalex.org/keywords/intuition","display_name":"Intuition","score":0.439129501581192},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3603072762489319},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3327074944972992},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33077406883239746},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.28779518604278564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2029637098312378},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.09205520153045654}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.9664415717124939},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7190003395080566},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6129906177520752},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5909534692764282},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5680503249168396},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.4923194646835327},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4670851230621338},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4663708806037903},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4654700458049774},{"id":"https://openalex.org/C132010649","wikidata":"https://www.wikidata.org/wiki/Q189222","display_name":"Intuition","level":2,"score":0.439129501581192},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3603072762489319},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3327074944972992},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33077406883239746},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.28779518604278564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2029637098312378},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.09205520153045654},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069558","descriptor_name":"Unsupervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069558","descriptor_name":"Unsupervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069558","descriptor_name":"Unsupervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1009224","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009224","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009224&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34383739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34383739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1009224","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009224","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:6a6bcaa0ec3c4c73a360fc6dbd6f0d0f","is_oa":true,"landing_page_url":"https://doaj.org/article/6a6bcaa0ec3c4c73a360fc6dbd6f0d0f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 8, p e1009224 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8384175","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8384175","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009224","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009224","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009224&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2530557234","display_name":null,"funder_award_id":"QTZX2180","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2734137956","display_name":null,"funder_award_id":"62R67451","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3075659553","display_name":null,"funder_award_id":"5003-20109205319","funder_id":"https://openalex.org/F4320323230","funder_display_name":"Xidian University"},{"id":"https://openalex.org/G627931995","display_name":null,"funder_award_id":"62002277","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6640186486","display_name":null,"funder_award_id":"61532014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8639979063","display_name":null,"funder_award_id":"61702397","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323230","display_name":"Xidian University","ror":"https://ror.org/05s92vm98"},{"id":"https://openalex.org/F4320327775","display_name":"Guizhou Institute of Technology","ror":"https://ror.org/05x510r30"},{"id":"https://openalex.org/F4320333993","display_name":"Microsoft Research Asia","ror":"https://ror.org/0300m5276"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3187466590.pdf","grobid_xml":"https://content.openalex.org/works/W3187466590.grobid-xml"},"referenced_works_count":115,"referenced_works":["https://openalex.org/W87092222","https://openalex.org/W87822204","https://openalex.org/W201974436","https://openalex.org/W297461772","https://openalex.org/W1598942597","https://openalex.org/W1827931243","https://openalex.org/W1829372799","https://openalex.org/W1967220865","https://openalex.org/W1967827763","https://openalex.org/W1979468759","https://openalex.org/W1981276685","https://openalex.org/W1987219048","https://openalex.org/W1987971958","https://openalex.org/W1991311318","https://openalex.org/W2001502878","https://openalex.org/W2008929650","https://openalex.org/W2009228073","https://openalex.org/W2011417152","https://openalex.org/W2023461603","https://openalex.org/W2024382130","https://openalex.org/W2025897051","https://openalex.org/W2045156863","https://openalex.org/W2061685913","https://openalex.org/W2061997283","https://openalex.org/W2065760681","https://openalex.org/W2079210771","https://openalex.org/W2081043824","https://openalex.org/W2082253757","https://openalex.org/W2095763169","https://openalex.org/W2096192437","https://openalex.org/W2096283457","https://openalex.org/W2096453387","https://openalex.org/W2096863518","https://openalex.org/W2098290597","https://openalex.org/W2098749998","https://openalex.org/W2100714130","https://openalex.org/W2103923312","https://openalex.org/W2105351532","https://openalex.org/W2105709960","https://openalex.org/W2105717378","https://openalex.org/W2107482271","https://openalex.org/W2107665951","https://openalex.org/W2115108310","https://openalex.org/W2117968640","https://openalex.org/W2132361314","https://openalex.org/W2132914434","https://openalex.org/W2134469465","https://openalex.org/W2135032122","https://openalex.org/W2136294701","https://openalex.org/W2136340483","https://openalex.org/W2137010357","https://openalex.org/W2137540340","https://openalex.org/W2139967559","https://openalex.org/W2141599838","https://openalex.org/W2143627094","https://openalex.org/W2145371674","https://openalex.org/W2154415691","https://openalex.org/W2155158051","https://openalex.org/W2156247618","https://openalex.org/W2157852151","https://openalex.org/W2158703881","https://openalex.org/W2159547203","https://openalex.org/W2163917918","https://openalex.org/W2165015714","https://openalex.org/W2170376772","https://openalex.org/W2180374961","https://openalex.org/W2185729964","https://openalex.org/W2218734540","https://openalex.org/W2233771168","https://openalex.org/W2258675270","https://openalex.org/W2264481086","https://openalex.org/W2283849418","https://openalex.org/W2292966831","https://openalex.org/W2321619235","https://openalex.org/W2336193318","https://openalex.org/W2399260173","https://openalex.org/W2405459681","https://openalex.org/W2487261336","https://openalex.org/W2515164523","https://openalex.org/W2559770535","https://openalex.org/W2580401855","https://openalex.org/W2624701078","https://openalex.org/W2739330662","https://openalex.org/W2752829361","https://openalex.org/W2765654979","https://openalex.org/W2767092306","https://openalex.org/W2776619248","https://openalex.org/W2783685429","https://openalex.org/W2796153225","https://openalex.org/W2803934991","https://openalex.org/W2808223587","https://openalex.org/W2809435836","https://openalex.org/W2884724578","https://openalex.org/W2906107882","https://openalex.org/W2909472027","https://openalex.org/W2913710075","https://openalex.org/W2919453023","https://openalex.org/W2949127449","https://openalex.org/W2950878899","https://openalex.org/W2950985821","https://openalex.org/W2951033368","https://openalex.org/W2951209146","https://openalex.org/W2954650112","https://openalex.org/W2961786220","https://openalex.org/W2964236544","https://openalex.org/W2980183989","https://openalex.org/W2980232174","https://openalex.org/W2981580125","https://openalex.org/W2981690252","https://openalex.org/W2994283242","https://openalex.org/W2996198942","https://openalex.org/W3003192283","https://openalex.org/W3017019970","https://openalex.org/W3130672622","https://openalex.org/W4252676770"],"related_works":["https://openalex.org/W2924366642","https://openalex.org/W4392558563","https://openalex.org/W4391259201","https://openalex.org/W3159101980","https://openalex.org/W3173875945","https://openalex.org/W2966125521","https://openalex.org/W3003192283","https://openalex.org/W2996736193","https://openalex.org/W2909364225","https://openalex.org/W4319793051"],"abstract_inverted_index":{"Computational":[0],"integrative":[1,63],"analysis":[2],"has":[3,28],"become":[4,29],"a":[5,30,94],"significant":[6],"approach":[7],"in":[8,76,105,196],"the":[9,35,50,60,81,125,135,141,170],"data-driven":[10],"exploration":[11],"of":[12,37,42,52,62,70,73,84,97,107,127,137,149,172,191],"biological":[13],"problems.":[14],"Many":[15],"integration":[16,100,173],"methods":[17,27,101],"for":[18,102,182],"cancer":[19,103,132],"subtyping":[20,104,133],"have":[21],"been":[22],"proposed,":[23],"but":[24],"evaluating":[25],"these":[26,90],"complicated":[31],"problem":[32],"due":[33],"to":[34,46,194],"lack":[36],"gold":[38],"standards.":[39],"Moreover,":[40],"questions":[41],"practical":[43],"importance":[44],"remain":[45],"be":[47,190],"addressed":[48],"regarding":[49],"impact":[51],"selecting":[53],"appropriate":[54],"data":[55,87,130,151,167,198],"types":[56,148],"and":[57,115,119,134],"combinations":[58,83,181],"on":[59,131],"performance":[61,171],"studies.":[64],"Here,":[65],"we":[66,92],"constructed":[67],"three":[68],"classes":[69],"benchmarking":[71],"datasets":[72],"nine":[74],"cancers":[75,184],"TCGA":[77],"by":[78,110],"considering":[79],"all":[80],"eleven":[82],"four":[85],"multi-omics":[86],"types.":[88],"Using":[89],"datasets,":[91],"conducted":[93],"comprehensive":[95],"evaluation":[96],"ten":[98],"representative":[99],"terms":[106],"accuracy":[108,114],"measured":[109],"combining":[111],"both":[112],"clustering":[113],"clinical":[116],"significance,":[117],"robustness,":[118],"computational":[120],"efficiency.":[121],"We":[122],"subsequently":[123],"investigated":[124],"influence":[126],"different":[128],"omics":[129,150,166,197],"effectiveness":[136],"their":[138],"combinations.":[139],"Refuting":[140],"widely":[142],"held":[143],"intuition":[144],"that":[145,159],"incorporating":[146],"more":[147,165],"always":[152],"produces":[153],"better":[154],"results,":[155],"our":[156,186],"analyses":[157,176],"showed":[158],"there":[160],"are":[161],"situations":[162],"where":[163],"integrating":[164],"negatively":[168],"impacts":[169],"methods.":[174],"Our":[175],"also":[177],"suggested":[178],"several":[179],"effective":[180],"most":[183],"under":[185],"studies,":[187],"which":[188],"may":[189],"particular":[192],"interest":[193],"researchers":[195],"analysis.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":35},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
