{"id":"https://openalex.org/W3047082542","doi":"https://doi.org/10.1371/journal.pcbi.1008967","title":"Antibody Watch: Text mining antibody specificity from the literature","display_name":"Antibody Watch: Text mining antibody specificity from the literature","publication_year":2021,"publication_date":"2021-05-27","ids":{"openalex":"https://openalex.org/W3047082542","doi":"https://doi.org/10.1371/journal.pcbi.1008967","mag":"3047082542","pmid":"https://pubmed.ncbi.nlm.nih.gov/34043624"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008967","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008967","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1008967","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040580626","display_name":"Chun\u2010Nan Hsu","orcid":"https://orcid.org/0000-0002-5240-4707"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun-Nan Hsu","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5240-4707","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078524542","display_name":"Chia\u2010Hui Chang","orcid":"https://orcid.org/0000-0002-1101-6337"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Chia-Hui Chang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University, Zhongli, Taiwan","Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1101-6337","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University, Zhongli, Taiwan","institution_ids":["https://openalex.org/I22265921"]},{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000770072","display_name":"Thamolwan Poopradubsil","orcid":"https://orcid.org/0000-0001-8273-7249"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Thamolwan Poopradubsil","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University, Zhongli, Taiwan"],"raw_orcid":"https://orcid.org/0000-0001-8273-7249","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University, Zhongli, Taiwan","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043072043","display_name":"Amanda Lo","orcid":"https://orcid.org/0000-0002-3764-8009"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amanda Lo","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-3764-8009","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080071064","display_name":"Karen A. William","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen A. William","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043562937","display_name":"Ko\u2010Wei Lin","orcid":"https://orcid.org/0000-0001-6645-2091"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ko-Wei Lin","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6645-2091","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058460697","display_name":"Anita Bandrowski","orcid":"https://orcid.org/0000-0002-5497-0243"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anita Bandrowski","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","SciCrunch, Inc. San Diego, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5497-0243","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"SciCrunch, Inc. San Diego, California, United States of America","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024882547","display_name":"\u0130brahim Burak \u00d6zyurt","orcid":"https://orcid.org/0000-0003-3944-1893"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ibrahim Burak Ozyurt","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3944-1893","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076014872","display_name":"Jeffrey S. Grethe","orcid":"https://orcid.org/0000-0001-5212-7052"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey S. Grethe","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-5212-7052","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061037631","display_name":"Maryann E. Martone","orcid":"https://orcid.org/0000-0002-8406-3871"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Maryann E. Martone","raw_affiliation_strings":["Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","SciCrunch, Inc. San Diego, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8406-3871","affiliations":[{"raw_affiliation_string":"Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"SciCrunch, Inc. San Diego, California, United States of America","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5061037631"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.4302,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60834706,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"17","issue":"5","first_page":"e1008967","last_page":"e1008967"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snippet","display_name":"Snippet","score":0.8720300793647766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.777454674243927},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6333194375038147},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6230830550193787},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5826441049575806},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.5778143405914307},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5016798973083496},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4073559641838074},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3541821837425232},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.12576788663864136},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11527037620544434}],"concepts":[{"id":"https://openalex.org/C2777822670","wikidata":"https://www.wikidata.org/wiki/Q1120538","display_name":"Snippet","level":2,"score":0.8720300793647766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.777454674243927},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6333194375038147},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6230830550193787},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5826441049575806},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.5778143405914307},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5016798973083496},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4073559641838074},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3541821837425232},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.12576788663864136},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11527037620544434},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000918","descriptor_name":"Antibody Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1008967","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008967","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34043624","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34043624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:2008.01937","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2008.01937","pdf_url":"https://arxiv.org/pdf/2008.01937","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:ark:/13030/qt3h67q1zm","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:49f35c7493f8451bb6251edd6758aa3f","is_oa":true,"landing_page_url":"https://doaj.org/article/49f35c7493f8451bb6251edd6758aa3f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 5, p e1008967 (2021)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt3h67q1zm","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/3h67q1zm","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology, vol 17, iss 5","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8189493","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8189493","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008967","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008967","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1131467706","display_name":null,"funder_award_id":"U24DK097771","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G7090437220","display_name":null,"funder_award_id":"U24DA039832","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G8444740816","display_name":null,"funder_award_id":"108-2918-I-008-004","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1502957213","https://openalex.org/W1578955001","https://openalex.org/W1592986776","https://openalex.org/W1831130656","https://openalex.org/W2039623374","https://openalex.org/W2044447824","https://openalex.org/W2079735306","https://openalex.org/W2084855813","https://openalex.org/W2111817213","https://openalex.org/W2114224807","https://openalex.org/W2138595422","https://openalex.org/W2143017621","https://openalex.org/W2155069789","https://openalex.org/W2163759862","https://openalex.org/W2173763791","https://openalex.org/W2250539671","https://openalex.org/W2251648804","https://openalex.org/W2253519362","https://openalex.org/W2346015361","https://openalex.org/W2465978385","https://openalex.org/W2470289662","https://openalex.org/W2507306980","https://openalex.org/W2508865106","https://openalex.org/W2562607067","https://openalex.org/W2586170684","https://openalex.org/W2761516325","https://openalex.org/W2767826728","https://openalex.org/W2774846296","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2915039166","https://openalex.org/W2916076862","https://openalex.org/W2922551710","https://openalex.org/W2947851192","https://openalex.org/W2953320089","https://openalex.org/W2963341956","https://openalex.org/W2963909901","https://openalex.org/W2969743835","https://openalex.org/W2970771982","https://openalex.org/W2986157475","https://openalex.org/W3033686643","https://openalex.org/W3105174597","https://openalex.org/W3122905245","https://openalex.org/W4229945091","https://openalex.org/W4237535470","https://openalex.org/W4240422451","https://openalex.org/W4241006937","https://openalex.org/W4245267204","https://openalex.org/W4247534684","https://openalex.org/W6732723936","https://openalex.org/W6748524066"],"related_works":["https://openalex.org/W1607713096","https://openalex.org/W3036724449","https://openalex.org/W2798329462","https://openalex.org/W1511521437","https://openalex.org/W3201315194","https://openalex.org/W4318980730","https://openalex.org/W4289376745","https://openalex.org/W2950904665","https://openalex.org/W2023083803","https://openalex.org/W2985134635"],"abstract_inverted_index":{"Antibodies":[0],"are":[1,68],"widely":[2],"used":[3,103],"reagents":[4],"to":[5,28,39,49,61,70,83,104,157,182,188,224,235,240,252],"test":[6],"for":[7],"expression":[8],"of":[9,54,65,79,85,114,131,140,185],"proteins":[10,31],"and":[11,124,163,174,218],"other":[12],"antigens.":[13],"However,":[14],"they":[15,23],"might":[16],"not":[17,25],"always":[18],"reliably":[19],"produce":[20],"results":[21],"when":[22,222],"do":[24],"specifically":[26],"bind":[27],"the":[29,52,63,77,96,144,153,166,195,207,226,241],"target":[30],"that":[32,67,137,169,201,248],"their":[33],"providers":[34],"designed":[35],"them":[36],"for,":[37],"leading":[38],"unreliable":[40],"research":[41],"results.":[42],"While":[43],"many":[44],"proposals":[45],"have":[46],"been":[47],"developed":[48,118],"deal":[50],"with":[51,128,210,215],"problem":[53,145],"antibody":[55,92,161,171],"specificity,":[56],"it":[57,249],"is":[58,156,176,181,250],"still":[59],"challenging":[60],"cover":[62],"millions":[64],"antibodies":[66,87,192,238,260],"available":[69],"researchers.":[71],"In":[72],"this":[73],"study,":[74],"we":[75],"investigate":[76],"feasibility":[78],"automatically":[80],"generating":[81],"alerts":[82,100],"users":[84],"problematic":[86,115,259],"by":[88,261],"extracting":[89],"statements":[90,113],"about":[91,160,258],"specificity":[93,162,243],"reported":[94,138],"in":[95,194],"literature.":[97],"The":[98,178,197,245],"extracted":[99,242],"can":[101,204],"be":[102],"construct":[105,253],"an":[106,150],"\"Antibody":[107],"Watch\"":[108],"knowledge":[109,256],"base":[110,257],"containing":[111],"supporting":[112],"antibodies.":[116,141],"We":[117,142,229],"a":[119,129,254],"deep":[120],"neural":[121],"network":[122],"system":[123,203],"tested":[125],"its":[126],"performance":[127],"corpus":[130],"more":[132,191],"than":[133],"two":[134,147],"thousand":[135],"articles":[136],"uses":[139],"divided":[143],"into":[146],"tasks.":[148],"Given":[149],"input":[151],"article,":[152],"first":[154],"task":[155,180,209],"identify":[158,237],"snippets":[159,167,187],"classify":[164],"if":[165],"report":[168],"any":[170],"exhibits":[172],"non-specificity,":[173],"thus":[175],"problematic.":[177],"second":[179],"link":[183],"each":[184],"these":[186],"one":[189],"or":[190],"mentioned":[193],"snippet.":[196],"experimental":[198],"evaluation":[199],"shows":[200,247],"our":[202],"accurately":[205],"perform":[206],"classification":[208],"0.925":[211],"weighted":[212,220],"F1-score,":[213],"linking":[214],"0.962":[216],"accuracy,":[217],"0.914":[219],"F1":[221],"combined":[223],"complete":[225],"joint":[227],"task.":[228],"leveraged":[230],"Research":[231],"Resource":[232],"Identifiers":[233],"(RRID)":[234],"precisely":[236],"linked":[239],"snippets.":[244],"result":[246],"feasible":[251],"reliable":[255],"text":[262],"mining.":[263]},"counts_by_year":[{"year":2022,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
