{"id":"https://openalex.org/W3148723922","doi":"https://doi.org/10.1371/journal.pcbi.1008867","title":"Collaborating with our community to increase code sharing","display_name":"Collaborating with our community to increase code sharing","publication_year":2021,"publication_date":"2021-03-30","ids":{"openalex":"https://openalex.org/W3148723922","doi":"https://doi.org/10.1371/journal.pcbi.1008867","mag":"3148723922","pmid":"https://pubmed.ncbi.nlm.nih.gov/33784294"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008867","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008867","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008867&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008867&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019050078","display_name":"Lauren Cadwallader","orcid":"https://orcid.org/0000-0002-7571-3502"},"institutions":[{"id":"https://openalex.org/I108652713","display_name":"Public Library of Science","ror":"https://ror.org/008zgvp64","country_code":"US","type":"archive","lineage":["https://openalex.org/I108652713"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lauren Cadwallader","raw_affiliation_strings":["PLOS, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-7571-3502","affiliations":[{"raw_affiliation_string":"PLOS, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I108652713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000119406","display_name":"Jason A. Papin","orcid":"https://orcid.org/0000-0002-2769-5805"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jason A. Papin","raw_affiliation_strings":["Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2769-5805","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045576072","display_name":"Feilim Mac Gabhann","orcid":"https://orcid.org/0000-0003-3481-7740"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Feilim Mac Gabhann","raw_affiliation_strings":["Department of Biomedical Engineering and Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3481-7740","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055182829","display_name":"Rebecca Kirk","orcid":"https://orcid.org/0000-0003-3541-0168"},"institutions":[{"id":"https://openalex.org/I108652713","display_name":"Public Library of Science","ror":"https://ror.org/008zgvp64","country_code":"US","type":"archive","lineage":["https://openalex.org/I108652713"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca Kirk","raw_affiliation_strings":["PLOS, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-3541-0168","affiliations":[{"raw_affiliation_string":"PLOS, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I108652713"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000119406","https://openalex.org/A5045576072"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I51556381"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":11.1181,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.97858736,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"3","first_page":"e1008867","last_page":"e1008867"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9678000211715698,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5074502825737},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46183112263679504},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.25816887617111206}],"concepts":[{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5074502825737},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46183112263679504},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25816887617111206},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066295","descriptor_name":"Open Access Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1008867","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008867","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008867&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33784294","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33784294","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:096797ba51bc42f2bc9faec939b12c69","is_oa":true,"landing_page_url":"https://doaj.org/article/096797ba51bc42f2bc9faec939b12c69","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 3, p e1008867 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8009435","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8009435","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008867","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008867","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008867&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3148723922.pdf","grobid_xml":"https://content.openalex.org/works/W3148723922.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1987108066","https://openalex.org/W2791462835","https://openalex.org/W2793993424","https://openalex.org/W3128076107","https://openalex.org/W4236185640","https://openalex.org/W4394482342"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Biology":[0,186],"was":[1],"launched":[2],"in":[3,36,52,131,153],"2005":[4],"as":[5,81],"a":[6,135,160,195],"journal":[7,46],"driven":[8],"by":[9],"the":[10,17,37,42,180],"computational":[11,154,157,172,190],"biology":[12,173,191],"research":[13,88,98,174],"community":[14],"and":[15,50,63,94,96,106,110,146,187],"with":[16,179,189],"principle":[18],"that":[19,25,41,54,200],"\"open":[20],"access":[21],"ensures":[22],"not":[23,85,128],"only":[24],"everything":[26],"we":[27,83,175],"publish":[28],"is":[29,65,78,127,150,159,201],"immediately":[30],"freely":[31],"available":[32],"to":[33,104,111,143,171,193,203],"anyone,":[34],"anywhere":[35],"world,":[38],"but":[39,90],"also":[40,91,151],"contents":[43],"of":[44,60,125,183,209],"this":[45],"can":[47,169],"be":[48,141,170],"redistributed":[49],"reused":[51],"ways":[53],"increase":[55,204],"their":[56],"value.\"":[57],"This":[58,76,123],"vision":[59],"openness,":[61],"redistribution,":[62],"reuse":[64],"so":[66],"essential":[67,165],"because":[68,80],"most":[69],"scientific":[70],"progress":[71,77],"builds":[72],"on":[73,113,207],"prior":[74],"efforts.":[75],"possible":[79],"scientists":[82],"share":[84],"just":[86,129],"our":[87,92,108,114],"results,":[89],"methods":[93],"protocols":[95],"key":[97,136,161],"tools.":[99],"Open":[100],"sharing":[101,126,206],"allows":[102],"others":[103],"check":[105],"reproduce":[107],"observations,":[109],"build":[112],"work,":[115,133],"giving":[116],"it":[117,149],"even":[118],"more":[119],"impact":[120],"over":[121],"time.":[122],"value":[124],"true":[130,152],"experimental":[132],"where":[134,156],"antibody":[137],"or":[138],"plasmid":[139],"must":[140],"shared":[142],"enable":[144],"scrutiny":[145],"further":[147],"research;":[148],"biology,":[155],"code":[158,168,198,205],"reagent.":[162],"Given":[163],"how":[164],"newly":[166],"developed":[167],"have":[176],"been":[177],"collaborating":[178],"Editorial":[181],"Board":[182],"PLOS":[184],"Computational":[185],"consulting":[188],"researchers":[192],"develop":[194],"new":[196],"more-rigorous":[197],"policy":[199],"intended":[202],"publication":[208],"articles.":[210]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
