{"id":"https://openalex.org/W3150505176","doi":"https://doi.org/10.1371/journal.pcbi.1008790","title":"Computational epitope map of SARS-CoV-2 spike protein","display_name":"Computational epitope map of SARS-CoV-2 spike protein","publication_year":2021,"publication_date":"2021-04-01","ids":{"openalex":"https://openalex.org/W3150505176","doi":"https://doi.org/10.1371/journal.pcbi.1008790","mag":"3150505176","pmid":"https://pubmed.ncbi.nlm.nih.gov/33793546"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008790","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008790","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008790&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008790&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081248405","display_name":"Mateusz Sikora","orcid":"https://orcid.org/0000-0003-1691-4045"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Mateusz Sikora","raw_affiliation_strings":["Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","Faculty of Physics, University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210124035"]},{"raw_affiliation_string":"Faculty of Physics, University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016674669","display_name":"S\u00f6ren von B\u00fclow","orcid":"https://orcid.org/0000-0001-7125-5973"},"institutions":[{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"S\u00f6ren von B\u00fclow","raw_affiliation_strings":["Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210124035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068021762","display_name":"Florian E.C. Blanc","orcid":"https://orcid.org/0000-0002-0762-0478"},"institutions":[{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian E. C. Blanc","raw_affiliation_strings":["Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210124035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033219019","display_name":"Michael Gecht","orcid":"https://orcid.org/0000-0002-4643-6593"},"institutions":[{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Gecht","raw_affiliation_strings":["Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210124035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067714652","display_name":"Roberto Covino","orcid":"https://orcid.org/0000-0003-0884-0402"},"institutions":[{"id":"https://openalex.org/I2801628138","display_name":"Frankfurt Institute for Advanced Studies","ror":"https://ror.org/05vmv8m79","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801628138"]},{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roberto Covino","raw_affiliation_strings":["Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210124035"]},{"raw_affiliation_string":"Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I2801628138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059945365","display_name":"Gerhard Hummer","orcid":"https://orcid.org/0000-0001-7768-746X"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Gerhard Hummer","raw_affiliation_strings":["Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","Institute of Biophysics, Goethe University Frankfurt, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210124035"]},{"raw_affiliation_string":"Institute of Biophysics, Goethe University Frankfurt, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I114090438"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5059945365"],"corresponding_institution_ids":["https://openalex.org/I114090438","https://openalex.org/I4210124035"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":8.709,"has_fulltext":true,"cited_by_count":144,"citation_normalized_percentile":{"value":0.98267037,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"17","issue":"4","first_page":"e1008790","last_page":"e1008790"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9314042329788208},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.6353227496147156},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5373064875602722},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4933597147464752},{"id":"https://openalex.org/keywords/epitope-mapping","display_name":"Epitope mapping","score":0.4765523076057434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45368021726608276},{"id":"https://openalex.org/keywords/viral-membrane","display_name":"Viral membrane","score":0.4367710053920746},{"id":"https://openalex.org/keywords/viral-protein","display_name":"Viral protein","score":0.41688844561576843},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4030537009239197},{"id":"https://openalex.org/keywords/viral-envelope","display_name":"Viral envelope","score":0.3491050601005554},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32554253935813904},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.3112146258354187},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.23883682489395142},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.20105451345443726},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16389816999435425},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14543071389198303}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9314042329788208},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.6353227496147156},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5373064875602722},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4933597147464752},{"id":"https://openalex.org/C2781241564","wikidata":"https://www.wikidata.org/wiki/Q1347450","display_name":"Epitope mapping","level":4,"score":0.4765523076057434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45368021726608276},{"id":"https://openalex.org/C2909404852","wikidata":"https://www.wikidata.org/wiki/Q994215","display_name":"Viral membrane","level":4,"score":0.4367710053920746},{"id":"https://openalex.org/C2780879997","wikidata":"https://www.wikidata.org/wiki/Q952587","display_name":"Viral protein","level":3,"score":0.41688844561576843},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4030537009239197},{"id":"https://openalex.org/C97380033","wikidata":"https://www.wikidata.org/wiki/Q994215","display_name":"Viral envelope","level":3,"score":0.3491050601005554},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32554253935813904},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.3112146258354187},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.23883682489395142},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.20105451345443726},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16389816999435425},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14543071389198303}],"mesh":[{"descriptor_ui":"D000071497","descriptor_name":"Immunogenicity, Vaccine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071497","descriptor_name":"Immunogenicity, Vaccine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071497","descriptor_name":"Immunogenicity, Vaccine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071497","descriptor_name":"Immunogenicity, Vaccine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001666","descriptor_name":"Binding Sites, Antibody","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001666","descriptor_name":"Binding Sites, Antibody","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001666","descriptor_name":"Binding Sites, Antibody","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001666","descriptor_name":"Binding Sites, Antibody","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008790","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008790","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008790&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33793546","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33793546","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-04906452v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04906452","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2021, 17 (4), pp.e1008790. &#x27E8;10.1371/journal.pcbi.1008790&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:bd75341385dd4a3ea752ae8bfc81661a","is_oa":true,"landing_page_url":"https://doaj.org/article/bd75341385dd4a3ea752ae8bfc81661a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 4, p e1008790 (2021)","raw_type":"article"},{"id":"pmh:oai:publikationen.ub.uni-frankfurt.de:73280","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:hebis:30:3-732800","pdf_url":null,"source":{"id":"https://openalex.org/S4306400432","display_name":"Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114090438","host_organization_name":"Goethe University Frankfurt","host_organization_lineage":["https://openalex.org/I114090438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8016105","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8016105","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008790","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008790","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008790&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.699999988079071}],"awards":[{"id":"https://openalex.org/G1433670972","display_name":null,"funder_award_id":"SUPERspike","funder_id":"https://openalex.org/F4320336863","funder_display_name":"Leibniz-Rechenzentrum"},{"id":"https://openalex.org/G154314135","display_name":null,"funder_award_id":"DynaMem","funder_id":"https://openalex.org/F4320321961","funder_display_name":"Hessisches Ministerium f\u00fcr Wissenschaft und Kunst"},{"id":"https://openalex.org/G331002243","display_name":null,"funder_award_id":"Fellow","funder_id":"https://openalex.org/F4320322434","funder_display_name":"Max-Planck-Gesellschaft"},{"id":"https://openalex.org/G3313088681","display_name":null,"funder_award_id":"32-B28","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G4226560423","display_name":null,"funder_award_id":"RGP0026/2017","funder_id":"https://openalex.org/F4320307846","funder_display_name":"Human Frontier Science Program"},{"id":"https://openalex.org/G5889962442","display_name":null,"funder_award_id":"478 J4332-B28","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G642131769","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320322434","funder_display_name":"Max-Planck-Gesellschaft"},{"id":"https://openalex.org/G7124494756","display_name":null,"funder_award_id":"J4332-B28","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G7289830536","display_name":null,"funder_award_id":"CMMS","funder_id":"https://openalex.org/F4320321961","funder_display_name":"Hessisches Ministerium f\u00fcr Wissenschaft und Kunst"}],"funders":[{"id":"https://openalex.org/F4320307846","display_name":"Human Frontier Science Program","ror":"https://ror.org/02ebx7v45"},{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"},{"id":"https://openalex.org/F4320321961","display_name":"Hessisches Ministerium f\u00fcr Wissenschaft und Kunst","ror":"https://ror.org/00zd5gr55"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"},{"id":"https://openalex.org/F4320336863","display_name":"Leibniz-Rechenzentrum","ror":"https://ror.org/05558nw16"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3150505176.pdf","grobid_xml":"https://content.openalex.org/works/W3150505176.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1477460761","https://openalex.org/W1994915168","https://openalex.org/W2041877620","https://openalex.org/W2048172399","https://openalex.org/W2066576902","https://openalex.org/W2071569701","https://openalex.org/W2091368178","https://openalex.org/W2097356092","https://openalex.org/W2122617162","https://openalex.org/W2142162860","https://openalex.org/W2143312809","https://openalex.org/W2161428851","https://openalex.org/W2210879955","https://openalex.org/W2519587264","https://openalex.org/W2611314002","https://openalex.org/W2792198944","https://openalex.org/W2914523419","https://openalex.org/W2921316854","https://openalex.org/W2946482289","https://openalex.org/W3007643904","https://openalex.org/W3009335299","https://openalex.org/W3010441732","https://openalex.org/W3011066375","https://openalex.org/W3011127849","https://openalex.org/W3013800395","https://openalex.org/W3014656992","https://openalex.org/W3021183041","https://openalex.org/W3023376619","https://openalex.org/W3024709636","https://openalex.org/W3025744748","https://openalex.org/W3025987322","https://openalex.org/W3029682964","https://openalex.org/W3032255042","https://openalex.org/W3032445823","https://openalex.org/W3034202401","https://openalex.org/W3034548712","https://openalex.org/W3036529319","https://openalex.org/W3036635817","https://openalex.org/W3037532095","https://openalex.org/W3038119563","https://openalex.org/W3040961530","https://openalex.org/W3042323010","https://openalex.org/W3044050454","https://openalex.org/W3044660350","https://openalex.org/W3047439400","https://openalex.org/W3049142173","https://openalex.org/W3058836816","https://openalex.org/W3080999659","https://openalex.org/W3081714253","https://openalex.org/W3088579397","https://openalex.org/W3096751000","https://openalex.org/W3103021984","https://openalex.org/W3105259316","https://openalex.org/W3132103094","https://openalex.org/W3159657574","https://openalex.org/W3164917922"],"related_works":["https://openalex.org/W2072253684","https://openalex.org/W2890011138","https://openalex.org/W2395381863","https://openalex.org/W2083677611","https://openalex.org/W4362475120","https://openalex.org/W4249868171","https://openalex.org/W4399729572","https://openalex.org/W185435846","https://openalex.org/W1770280392","https://openalex.org/W3036517279"],"abstract_inverted_index":{"The":[0,115],"primary":[1],"immunological":[2],"target":[3],"of":[4,40,49,112,123],"COVID-19":[5],"vaccines":[6],"is":[7,14,137],"the":[8,17,25,92,110,120,127],"SARS-CoV-2":[9],"spike":[10],"(S)":[11],"protein.":[12],"S":[13,59,79],"exposed":[15],"on":[16,78],"viral":[18,22,50,146],"surface":[19,101],"and":[20,57,69,80,94,119,139],"mediates":[21],"entry":[23],"into":[24],"host":[26],"cell.":[27],"To":[28],"identify":[29],"possible":[30],"antibody":[31,71],"binding":[32,72],"sites,":[33],"we":[34,74],"performed":[35],"multi-microsecond":[36],"molecular":[37],"dynamics":[38],"simulations":[39],"a":[41,47,100],"4.1":[42],"million":[43],"atom":[44],"system":[45],"containing":[46],"patch":[48],"membrane":[51],"with":[52],"four":[53],"full-length,":[54],"fully":[55],"glycosylated":[56],"palmitoylated":[58],"proteins.":[60],"By":[61],"mapping":[62],"steric":[63],"accessibility,":[64],"structural":[65,113],"rigidity,":[66],"sequence":[67],"conservation,":[68],"generic":[70],"signatures,":[73],"recover":[75],"known":[76],"epitopes":[77],"reveal":[81],"promising":[82],"epitope":[83,131],"candidates":[84],"for":[85,144],"structure-based":[86],"vaccine":[87],"design.":[88],"We":[89],"find":[90],"that":[91],"extensive":[93],"inherently":[95],"flexible":[96],"glycan":[97,117],"coat":[98],"shields":[99],"area":[102],"larger":[103],"than":[104],"expected":[105],"from":[106],"static":[107],"structures,":[108],"highlighting":[109],"importance":[111],"dynamics.":[114],"protective":[116],"shield":[118],"high":[121],"flexibility":[122],"its":[124],"hinges":[125],"give":[126],"stalk":[128],"overall":[129],"low":[130],"scores.":[132],"Our":[133],"computational":[134],"epitope-mapping":[135],"procedure":[136],"general":[138],"should":[140],"thus":[141],"prove":[142],"useful":[143],"other":[145],"envelope":[147],"proteins":[148],"whose":[149],"structures":[150],"have":[151],"been":[152],"characterized.":[153]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":52},{"year":2021,"cited_by_count":33},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
