{"id":"https://openalex.org/W3123127891","doi":"https://doi.org/10.1371/journal.pcbi.1008565","title":"Online analysis of microendoscopic 1-photon calcium imaging data streams","display_name":"Online analysis of microendoscopic 1-photon calcium imaging data streams","publication_year":2021,"publication_date":"2021-01-28","ids":{"openalex":"https://openalex.org/W3123127891","doi":"https://doi.org/10.1371/journal.pcbi.1008565","mag":"3123127891","pmid":"https://pubmed.ncbi.nlm.nih.gov/33507937"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008565","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008565","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008565&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008565&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088167504","display_name":"Johannes Friedrich","orcid":"https://orcid.org/0000-0002-1321-5866"},"institutions":[{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Johannes Friedrich","raw_affiliation_strings":["Flatiron Institute, Simons Foundation, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"Flatiron Institute, Simons Foundation, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210107338"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054296113","display_name":"Andrea Giovannucci","orcid":"https://orcid.org/0000-0002-7850-444X"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrea Giovannucci","raw_affiliation_strings":["Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University; and UNC Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America","Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University","UNC Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America"],"affiliations":[{"raw_affiliation_string":"Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University; and UNC Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I137902535"]},{"raw_affiliation_string":"UNC Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054955073","display_name":"Eftychios A. Pnevmatikakis","orcid":"https://orcid.org/0000-0003-1509-6394"},"institutions":[{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eftychios A. Pnevmatikakis","raw_affiliation_strings":["Flatiron Institute, Simons Foundation, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"Flatiron Institute, Simons Foundation, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210107338"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5088167504"],"corresponding_institution_ids":["https://openalex.org/I4210107338"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.7892,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.93911917,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"e1008565","last_page":"e1008565"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7927913665771484},{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.5594477653503418},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.516623318195343},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.515940248966217},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4613416790962219},{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.4388105571269989},{"id":"https://openalex.org/keywords/real-time-computing","display_name":"Real-time computing","score":0.3320944309234619},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.32345107197761536},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.30801624059677124}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7927913665771484},{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.5594477653503418},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.516623318195343},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.515940248966217},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4613416790962219},{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.4388105571269989},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.3320944309234619},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.32345107197761536},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30801624059677124},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001923","descriptor_name":"Brain Chemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001923","descriptor_name":"Brain Chemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001923","descriptor_name":"Brain Chemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004724","descriptor_name":"Endoscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004724","descriptor_name":"Endoscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004724","descriptor_name":"Endoscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017785","descriptor_name":"Photons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017785","descriptor_name":"Photons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017785","descriptor_name":"Photons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008565","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008565","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008565&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33507937","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33507937","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1008565","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008565","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:cdcb54cf1b9549459d21e01910b5ee41","is_oa":true,"landing_page_url":"https://doaj.org/article/cdcb54cf1b9549459d21e01910b5ee41","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 1, p e1008565 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6765444","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7842953","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7842953","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7842953","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008565","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008565","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008565&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3123127891.pdf","grobid_xml":"https://content.openalex.org/works/W3123127891.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1654207600","https://openalex.org/W1979085769","https://openalex.org/W2010600019","https://openalex.org/W2026034143","https://openalex.org/W2041656098","https://openalex.org/W2061960194","https://openalex.org/W2067474937","https://openalex.org/W2077374589","https://openalex.org/W2112447569","https://openalex.org/W2231009150","https://openalex.org/W2274452385","https://openalex.org/W2397643408","https://openalex.org/W2404947714","https://openalex.org/W2469594461","https://openalex.org/W2559655401","https://openalex.org/W2595012769","https://openalex.org/W2612690371","https://openalex.org/W2743961201","https://openalex.org/W2751434417","https://openalex.org/W2753811918","https://openalex.org/W2785323625","https://openalex.org/W2793823359","https://openalex.org/W2804636914","https://openalex.org/W2805271873","https://openalex.org/W2809878865","https://openalex.org/W2900317266","https://openalex.org/W2900440811","https://openalex.org/W2914213517","https://openalex.org/W2930741432","https://openalex.org/W2936929958","https://openalex.org/W2945579521","https://openalex.org/W2949633842","https://openalex.org/W2950205567","https://openalex.org/W2952096272","https://openalex.org/W2952986861","https://openalex.org/W2963621587","https://openalex.org/W3000396208","https://openalex.org/W3105014772","https://openalex.org/W4241653265","https://openalex.org/W4254152649","https://openalex.org/W6892199428"],"related_works":["https://openalex.org/W3153292769","https://openalex.org/W2045444909","https://openalex.org/W1516398359","https://openalex.org/W1901656956","https://openalex.org/W2990805456","https://openalex.org/W2941659365","https://openalex.org/W4239210160","https://openalex.org/W2376300433","https://openalex.org/W4242605858","https://openalex.org/W2495255596"],"abstract_inverted_index":{"In":[0],"vivo":[1],"calcium":[2],"imaging":[3,8],"through":[4],"microendoscopic":[5,35,93,124,158],"lenses":[6],"enables":[7,127],"of":[9,16,45,56,69,103,201,221],"neuronal":[10,89],"populations":[11],"deep":[12],"within":[13],"the":[14,46,67,104,181],"brains":[15],"freely":[17],"moving":[18],"animals.":[19],"Previously,":[20],"a":[21,119,153,226],"constrained":[22],"matrix":[23],"factorization":[24],"approach":[25,39,134],"(CNMF-E)":[26],"has":[27],"been":[28],"suggested":[29],"to":[30,66,151,190,203],"extract":[31],"single-neuronal":[32],"activity":[33,90,148],"from":[34,91],"data.":[36,94],"However,":[37],"this":[38],"relies":[40],"on":[41,165,225],"offline":[42,183],"batch":[43],"processing":[44],"entire":[47],"video":[48],"data":[49,125,159,206,223],"and":[50,58,72,112,137,147,172,193,210],"is":[51,135],"demanding":[52],"both":[53,79],"in":[54],"terms":[55],"computing":[57,191],"memory":[59,111,194,213],"requirements.":[60,114,195,214],"These":[61],"drawbacks":[62],"prevent":[63],"its":[64,110],"applicability":[65],"analysis":[68,220],"large":[70],"datasets":[71,171],"closed-loop":[73],"experimental":[74,170],"settings.":[75],"Here":[76],"we":[77],"address":[78],"issues":[80],"by":[81],"introducing":[82],"two":[83],"different":[84],"online":[85,101,143,219],"algorithms":[86,164],"for":[87,123,157],"extracting":[88],"streaming":[92],"Our":[95,115,133],"first":[96],"algorithm,":[97,106],"OnACID-E,":[98],"presents":[99],"an":[100],"adaptation":[102],"CNMF-E":[105,202],"which":[107],"dramatically":[108,211],"reduces":[109],"computation":[113],"second":[116],"algorithm":[117],"proposes":[118],"convolution-based":[120],"background":[121],"model":[122],"that":[126,174],"even":[128,224],"faster":[129],"(real":[130],"time)":[131],"processing.":[132],"modular":[136],"can":[138,197],"be":[139,198],"combined":[140],"with":[141,188,207],"existing":[142],"motion":[144],"artifact":[145],"correction":[146],"deconvolution":[149],"methods":[150],"provide":[152],"highly":[154],"scalable":[155],"pipeline":[156],"analysis.":[160],"We":[161],"apply":[162],"our":[163],"four":[166],"previously":[167],"published":[168],"typical":[169],"show":[173],"they":[175,216],"yield":[176],"similar":[177],"high-quality":[178],"results":[179],"as":[180],"popular":[182],"approach,":[184],"but":[185],"outperform":[186],"it":[187],"regard":[189],"time":[192],"They":[196],"used":[199],"instead":[200],"process":[204],"pre-recorded":[205],"boosted":[208],"speeds":[209],"reduced":[212],"Further,":[215],"newly":[217],"enable":[218],"live-streaming":[222],"laptop.":[227]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
