{"id":"https://openalex.org/W3118222884","doi":"https://doi.org/10.1371/journal.pcbi.1008520","title":"Systems biology predicts that fibrosis in tuberculous granulomas may arise through macrophage-to-myofibroblast transformation","display_name":"Systems biology predicts that fibrosis in tuberculous granulomas may arise through macrophage-to-myofibroblast transformation","publication_year":2020,"publication_date":"2020-12-28","ids":{"openalex":"https://openalex.org/W3118222884","doi":"https://doi.org/10.1371/journal.pcbi.1008520","mag":"3118222884","pmid":"https://pubmed.ncbi.nlm.nih.gov/33370784"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008520","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008520","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008520&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008520&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074373302","display_name":"Stephanie Evans","orcid":"https://orcid.org/0000-0002-2345-5249"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210111179","display_name":"Michigan United","ror":"https://ror.org/0291ys696","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210111179"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stephanie Evans","raw_affiliation_strings":["Microbiology and Immunology, School of Medicine, University of Michigan Medical School, Ann Arbor, Michigan, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2345-5249","affiliations":[{"raw_affiliation_string":"Microbiology and Immunology, School of Medicine, University of Michigan Medical School, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210111179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051431598","display_name":"James Butler","orcid":"https://orcid.org/0000-0001-8333-947X"},"institutions":[{"id":"https://openalex.org/I2800518131","display_name":"Adventist University of Health Sciences","ror":"https://ror.org/03w5gm511","country_code":"US","type":"education","lineage":["https://openalex.org/I2800518131"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Russell Butler","raw_affiliation_strings":["Division of Biological Sciences, Advent Health University, Orlando, Florida, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biological Sciences, Advent Health University, Orlando, Florida, United States of America","institution_ids":["https://openalex.org/I2800518131"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010808044","display_name":"Joshua T. Mattila","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joshua T. Mattila","raw_affiliation_strings":["Center for Vaccine Research, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America","Department of Infectious Disease and Microbiology, Graduate School of Public Health, University of Pittsburgh, Pennsylvania, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Vaccine Research, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Infectious Disease and Microbiology, Graduate School of Public Health, University of Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067786863","display_name":"Denise E. Kirschner","orcid":"https://orcid.org/0000-0002-1053-2591"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210111179","display_name":"Michigan United","ror":"https://ror.org/0291ys696","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210111179"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Denise E. Kirschner","raw_affiliation_strings":["Microbiology and Immunology, School of Medicine, University of Michigan Medical School, Ann Arbor, Michigan, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbiology and Immunology, School of Medicine, University of Michigan Medical School, Ann Arbor, Michigan, United States of America","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210111179"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010808044","https://openalex.org/A5051431598","https://openalex.org/A5067786863","https://openalex.org/A5074373302"],"corresponding_institution_ids":["https://openalex.org/I170201317","https://openalex.org/I27837315","https://openalex.org/I2800518131","https://openalex.org/I4210111179"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.6901,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.82792932,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"16","issue":"12","first_page":"e1008520","last_page":"e1008520"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11381","display_name":"Infectious Diseases and Tuberculosis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11571","display_name":"Sarcoidosis and Beryllium Toxicity Research","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granuloma","display_name":"Granuloma","score":0.7269116640090942},{"id":"https://openalex.org/keywords/fibrosis","display_name":"Fibrosis","score":0.7239699363708496},{"id":"https://openalex.org/keywords/macrophage","display_name":"Macrophage","score":0.6746600866317749},{"id":"https://openalex.org/keywords/myofibroblast","display_name":"Myofibroblast","score":0.5943424701690674},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.5784611701965332},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5601227283477783},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.5153481364250183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.457391619682312},{"id":"https://openalex.org/keywords/myeloid","display_name":"Myeloid","score":0.4383169710636139},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.41054093837738037},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.3713051676750183},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3531791567802429}],"concepts":[{"id":"https://openalex.org/C2780140890","wikidata":"https://www.wikidata.org/wiki/Q1129338","display_name":"Granuloma","level":2,"score":0.7269116640090942},{"id":"https://openalex.org/C2780559512","wikidata":"https://www.wikidata.org/wiki/Q605709","display_name":"Fibrosis","level":2,"score":0.7239699363708496},{"id":"https://openalex.org/C2779244956","wikidata":"https://www.wikidata.org/wiki/Q184204","display_name":"Macrophage","level":3,"score":0.6746600866317749},{"id":"https://openalex.org/C207865475","wikidata":"https://www.wikidata.org/wiki/Q1467330","display_name":"Myofibroblast","level":3,"score":0.5943424701690674},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.5784611701965332},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5601227283477783},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.5153481364250183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.457391619682312},{"id":"https://openalex.org/C2779282312","wikidata":"https://www.wikidata.org/wiki/Q1956561","display_name":"Myeloid","level":2,"score":0.4383169710636139},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.41054093837738037},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.3713051676750183},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3531791567802429},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005355","descriptor_name":"Fibrosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005355","descriptor_name":"Fibrosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005355","descriptor_name":"Fibrosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006099","descriptor_name":"Granuloma","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006099","descriptor_name":"Granuloma","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006099","descriptor_name":"Granuloma","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050794","descriptor_name":"STAT1 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050794","descriptor_name":"STAT1 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050794","descriptor_name":"STAT1 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050796","descriptor_name":"STAT3 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050796","descriptor_name":"STAT3 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050796","descriptor_name":"STAT3 Transcription Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058628","descriptor_name":"Myofibroblasts","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D058628","descriptor_name":"Myofibroblasts","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D058628","descriptor_name":"Myofibroblasts","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008520","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008520","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008520&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33370784","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33370784","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:60ab6422596b4954ab6edd0dbfc5ff1a","is_oa":true,"landing_page_url":"https://doaj.org/article/60ab6422596b4954ab6edd0dbfc5ff1a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 12, p e1008520 (2020)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6745460","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7793262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:osti.gov:2471139","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2471139","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7793262","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7793262","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008520","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008520","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008520&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8700000047683716}],"awards":[{"id":"https://openalex.org/G1554045874","display_name":null,"funder_award_id":"ACI-1053575","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4230198310","display_name":null,"funder_award_id":"R01HL110811","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4737709065","display_name":null,"funder_award_id":"ACI-1053575","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6778350887","display_name":null,"funder_award_id":"1053575","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8835908270","display_name":null,"funder_award_id":"R01AI123093","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320307136","display_name":"American Association of Immunologists","ror":"https://ror.org/04q9fhm49"},{"id":"https://openalex.org/F4320317220","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3118222884.pdf","grobid_xml":"https://content.openalex.org/works/W3118222884.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1489810600","https://openalex.org/W1561501622","https://openalex.org/W1921978241","https://openalex.org/W1938666192","https://openalex.org/W1964889189","https://openalex.org/W1974581595","https://openalex.org/W1979034309","https://openalex.org/W1980325398","https://openalex.org/W1988201931","https://openalex.org/W2011386209","https://openalex.org/W2024722141","https://openalex.org/W2036084890","https://openalex.org/W2038669746","https://openalex.org/W2065049812","https://openalex.org/W2066388620","https://openalex.org/W2068034671","https://openalex.org/W2071857026","https://openalex.org/W2092448486","https://openalex.org/W2098709296","https://openalex.org/W2109531704","https://openalex.org/W2120795306","https://openalex.org/W2127153014","https://openalex.org/W2129258219","https://openalex.org/W2130200785","https://openalex.org/W2134164289","https://openalex.org/W2141890333","https://openalex.org/W2147799284","https://openalex.org/W2151035991","https://openalex.org/W2152803686","https://openalex.org/W2162660367","https://openalex.org/W2164008726","https://openalex.org/W2167279371","https://openalex.org/W2180267890","https://openalex.org/W2255925370","https://openalex.org/W2339051363","https://openalex.org/W2346724087","https://openalex.org/W2473985047","https://openalex.org/W2559257586","https://openalex.org/W2645652987","https://openalex.org/W2756507036","https://openalex.org/W2770327944","https://openalex.org/W2793035493","https://openalex.org/W2801912515","https://openalex.org/W2885534843","https://openalex.org/W2891255725","https://openalex.org/W2896837916","https://openalex.org/W2901696074","https://openalex.org/W2980401808","https://openalex.org/W2996452081","https://openalex.org/W4237151101"],"related_works":["https://openalex.org/W108735399","https://openalex.org/W3210817147","https://openalex.org/W2013026724","https://openalex.org/W3164510449","https://openalex.org/W2342591146","https://openalex.org/W4239985133","https://openalex.org/W4310951879","https://openalex.org/W3031409310","https://openalex.org/W2472852872","https://openalex.org/W2038251671"],"abstract_inverted_index":{"Mycobacterium":[0],"tuberculosis":[1,5],"(Mtb)":[2],"infection":[3],"causes":[4],"(TB),":[6],"a":[7,47,95,147,211,228],"disease":[8,64,165],"characterized":[9],"by":[10,38],"development":[11],"of":[12,16,31,46,111,115,141,150,163,214,242],"granulomas.":[13,79],"Granulomas":[14],"consist":[15],"activated":[17],"immune":[18],"cells":[19,179,239],"that":[20,75,157,186,203,224],"cluster":[21],"together":[22],"to":[23,108,154,176],"limit":[24],"bacterial":[25],"growth":[26],"and":[27,44,56,62,81,100,126,130,180,216,233],"restrict":[28],"dissemination.":[29],"Control":[30],"the":[32,73,112,119,139,161,169],"TB":[33,67,151],"epidemic":[34],"has":[35,105],"been":[36,106],"limited":[37,113],"lengthy":[39],"drug":[40],"regimens,":[41],"antibiotic":[42],"resistance,":[43],"lack":[45],"robustly":[48],"efficacious":[49],"vaccine.":[50],"Fibrosis":[51],"commonly":[52,192],"occurs":[53],"during":[54],"treatment":[55],"is":[57,70,191,205],"associated":[58],"with":[59,91,171],"both":[60],"positive":[61],"negative":[63],"outcomes":[65],"in":[66,78,123,134,143,207,219],"but":[68],"little":[69],"known":[71],"about":[72],"processes":[74],"initiate":[76],"fibrosis":[77,86,142,159,232],"Human":[80],"nonhuman":[82,174],"primate":[83],"granulomas":[84,172],"undergoing":[85],"can":[87,194],"have":[88],"spindle-shaped":[89],"macrophages":[90,209],"fibroblast-like":[92],"morphologies":[93],"suggesting":[94],"relationship":[96,104],"between":[97,128],"macrophages,":[98],"fibroblasts,":[99],"granuloma":[101,152,188,220],"fibrosis.":[102],"This":[103],"difficult":[107],"investigate":[109],"because":[110],"availability":[114],"human":[116,124],"pathology":[117],"samples,":[118],"time":[120],"scale":[121],"involved":[122],"TB,":[125,144],"overlap":[127],"fibroblast":[129],"myeloid":[131,178,238],"cell":[132],"markers":[133],"tissues.":[135],"To":[136],"better":[137],"understand":[138],"origins":[140],"we":[145,201],"used":[146],"computational":[148],"model":[149,170],"biology":[153],"identify":[155],"factors":[156],"drive":[158],"over":[160],"course":[162],"local":[164],"progression.":[166],"We":[167,222],"validated":[168],"from":[173],"primates":[175],"delineate":[177],"lung-resident":[181],"fibroblasts.":[182],"Our":[183],"results":[184],"suggest":[185],"peripheral":[187],"fibrosis,":[189],"which":[190],"observed,":[193],"arise":[195],"through":[196,210],"macrophage-to-myofibroblast":[197],"transformation":[198],"(MMT).":[199],"Further,":[200],"hypothesize":[202],"MMT":[204,225],"induced":[206],"M1":[208],"sequential":[212],"combination":[213],"inflammatory":[215],"anti-inflammatory":[217],"signaling":[218],"macrophages.":[221],"predict":[223],"may":[226],"be":[227],"mechanism":[229],"underlying":[230],"granuloma-associated":[231],"warrants":[234],"further":[235],"investigation":[236],"into":[237],"as":[240],"drivers":[241],"fibrotic":[243],"disease.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":4}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}
