{"id":"https://openalex.org/W3116719720","doi":"https://doi.org/10.1371/journal.pcbi.1008488","title":"On the NF-Y regulome as in ENCODE (2019)","display_name":"On the NF-Y regulome as in ENCODE (2019)","publication_year":2020,"publication_date":"2020-12-28","ids":{"openalex":"https://openalex.org/W3116719720","doi":"https://doi.org/10.1371/journal.pcbi.1008488","mag":"3116719720","pmid":"https://pubmed.ncbi.nlm.nih.gov/33370256"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008488","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008488","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008488&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008488&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042884089","display_name":"Mirko Ronzio","orcid":"https://orcid.org/0000-0002-4699-4405"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mirko Ronzio","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0002-4699-4405","affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064280279","display_name":"Andrea Bernardini","orcid":"https://orcid.org/0000-0001-5082-5295"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Bernardini","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067492946","display_name":"Giulio Pavesi","orcid":"https://orcid.org/0000-0001-5705-6249"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulio Pavesi","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080777829","display_name":"Roberto Mantovani","orcid":"https://orcid.org/0000-0003-4903-6082"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberto Mantovani","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042302307","display_name":"Diletta Dolfini","orcid":"https://orcid.org/0000-0002-5346-6096"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Diletta Dolfini","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0002-5346-6096","affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5042302307"],"corresponding_institution_ids":["https://openalex.org/I189158943"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.3344,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.58607698,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"16","issue":"12","first_page":"e1008488","last_page":"e1008488"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.796562910079956},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5926612615585327},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5820707082748413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.568126380443573},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5269849300384521},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.512934684753418},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4987921714782715},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4541643261909485},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.41798147559165955},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4145893454551697},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41301167011260986}],"concepts":[{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.796562910079956},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5926612615585327},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5820707082748413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.568126380443573},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5269849300384521},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.512934684753418},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4987921714782715},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4541643261909485},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.41798147559165955},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4145893454551697},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41301167011260986},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023081","descriptor_name":"CCAAT-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023081","descriptor_name":"CCAAT-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023081","descriptor_name":"CCAAT-Binding Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008488","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008488","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008488&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33370256","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33370256","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:air.unimi.it:2434/820790","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/820790","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:e2ebf8eaac7441e3b83d89ac19a8b050","is_oa":true,"landing_page_url":"https://doaj.org/article/e2ebf8eaac7441e3b83d89ac19a8b050","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 12, p e1008488 (2020)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6745471","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7793273","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7793273","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7793273","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008488","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008488","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008488&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1603666217","display_name":null,"funder_award_id":"19050","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3116719720.pdf","grobid_xml":"https://content.openalex.org/works/W3116719720.grobid-xml"},"referenced_works_count":90,"referenced_works":["https://openalex.org/W1605657905","https://openalex.org/W1881449691","https://openalex.org/W1956993157","https://openalex.org/W1969772407","https://openalex.org/W1973012451","https://openalex.org/W1980195461","https://openalex.org/W1984861964","https://openalex.org/W1986571428","https://openalex.org/W1987085172","https://openalex.org/W1992788889","https://openalex.org/W2000465521","https://openalex.org/W2001554877","https://openalex.org/W2007013450","https://openalex.org/W2012120921","https://openalex.org/W2013213258","https://openalex.org/W2015064961","https://openalex.org/W2015844263","https://openalex.org/W2018219462","https://openalex.org/W2022037876","https://openalex.org/W2026731344","https://openalex.org/W2027847170","https://openalex.org/W2029824370","https://openalex.org/W2034987096","https://openalex.org/W2043817901","https://openalex.org/W2046108122","https://openalex.org/W2047446484","https://openalex.org/W2051875167","https://openalex.org/W2055801225","https://openalex.org/W2057514430","https://openalex.org/W2071412381","https://openalex.org/W2077284520","https://openalex.org/W2081755837","https://openalex.org/W2083530700","https://openalex.org/W2084160423","https://openalex.org/W2085442947","https://openalex.org/W2085459501","https://openalex.org/W2085983419","https://openalex.org/W2096269769","https://openalex.org/W2098391569","https://openalex.org/W2099818637","https://openalex.org/W2106758941","https://openalex.org/W2107281049","https://openalex.org/W2118608526","https://openalex.org/W2122205071","https://openalex.org/W2128016314","https://openalex.org/W2134957137","https://openalex.org/W2136093058","https://openalex.org/W2144256548","https://openalex.org/W2145920004","https://openalex.org/W2147372875","https://openalex.org/W2155304372","https://openalex.org/W2160304959","https://openalex.org/W2166811005","https://openalex.org/W2179438025","https://openalex.org/W2259938310","https://openalex.org/W2261971875","https://openalex.org/W2279960284","https://openalex.org/W2307001346","https://openalex.org/W2345727802","https://openalex.org/W2398319251","https://openalex.org/W2409806253","https://openalex.org/W2512429335","https://openalex.org/W2527535582","https://openalex.org/W2543940717","https://openalex.org/W2548826862","https://openalex.org/W2560291668","https://openalex.org/W2578561521","https://openalex.org/W2601060524","https://openalex.org/W2725540830","https://openalex.org/W2734960082","https://openalex.org/W2743410506","https://openalex.org/W2765329585","https://openalex.org/W2769630486","https://openalex.org/W2789938322","https://openalex.org/W2790207725","https://openalex.org/W2808408669","https://openalex.org/W2896927938","https://openalex.org/W2898699401","https://openalex.org/W2901448061","https://openalex.org/W2913790533","https://openalex.org/W2945954586","https://openalex.org/W2960050536","https://openalex.org/W2971231558","https://openalex.org/W2973165928","https://openalex.org/W2982807965","https://openalex.org/W2985495538","https://openalex.org/W2990523642","https://openalex.org/W2994835112","https://openalex.org/W3006706462","https://openalex.org/W4213296593"],"related_works":["https://openalex.org/W2468279273","https://openalex.org/W2354198838","https://openalex.org/W1989130879","https://openalex.org/W2103419012","https://openalex.org/W2988126442","https://openalex.org/W1974414866","https://openalex.org/W2057568687","https://openalex.org/W2063982682","https://openalex.org/W2338543196","https://openalex.org/W2131580913"],"abstract_inverted_index":{"NF-Y":[0,62,122],"is":[1],"a":[2,141],"trimeric":[3],"Transcription":[4],"Factor":[5],"-TF-":[6],"which":[7],"binds":[8],"with":[9,124],"high":[10],"selectivity":[11],"to":[12],"the":[13,41,66,115,133,145],"conserved":[14],"CCAAT":[15],"element.":[16],"Individual":[17],"ChIP-seq":[18],"analysis":[19],"as":[20,22,54,109,111],"well":[21,55,110],"ENCODE":[23,39],"have":[24,34,140],"progressively":[25],"identified":[26],"locations":[27],"shared":[28],"by":[29,38],"other":[30],"TFs.":[31],"Here,":[32],"we":[33],"analyzed":[35],"data":[36,119],"introduced":[37],"over":[40],"last":[42],"five":[43],"years":[44],"in":[45,77,144],"K562,":[46],"HeLa-S3":[47],"and":[48,71,94,99],"GM12878,":[49],"including":[50],"several":[51],"chromatin":[52],"features,":[53],"RNA-seq":[56],"profiling":[57],"of":[58,68,91,106,127,130,147],"HeLa":[59],"cells":[60],"after":[61],"inactivation.":[63],"We":[64,74],"double":[65],"number":[67],"sequence-specific":[69],"TFs":[70],"co-factors":[72],"reported.":[73],"catalogue":[75],"them":[76],"4":[78],"classes":[79,129],"based":[80],"on":[81,132],"co-association":[82],"criteria,":[83],"infer":[84],"target":[85],"genes":[86],"categorizations,":[87],"identify":[88],"positional":[89],"bias":[90],"binding":[92],"sites":[93],"gene":[95],"expression":[96],"changes.":[97],"Larger":[98],"novel":[100],"co-associations":[101],"emerge,":[102],"specifically":[103],"concerning":[104],"subunits":[105],"repressive":[107],"complexes":[108],"RNA-binding":[112],"proteins.":[113],"On":[114],"one":[116],"hand,":[117],"these":[118],"better":[120],"define":[121],"association":[123],"single":[125],"members":[126],"major":[128],"TFs,":[131],"other,":[134],"they":[135],"suggest":[136],"that":[137],"it":[138],"might":[139],"wider":[142],"role":[143],"control":[146],"mRNA":[148],"production.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}