{"id":"https://openalex.org/W3095895146","doi":"https://doi.org/10.1371/journal.pcbi.1008387","title":"RNA structure prediction using positive and negative evolutionary information","display_name":"RNA structure prediction using positive and negative evolutionary information","publication_year":2020,"publication_date":"2020-10-30","ids":{"openalex":"https://openalex.org/W3095895146","doi":"https://doi.org/10.1371/journal.pcbi.1008387","mag":"3095895146","pmid":"https://pubmed.ncbi.nlm.nih.gov/33125376"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008387","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008387","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1008387","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051867731","display_name":"Elena Rivas","orcid":"https://orcid.org/0000-0002-2084-269X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Elena Rivas","raw_affiliation_strings":["Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA"],"raw_orcid":"https://orcid.org/0000-0002-2084-269X","affiliations":[{"raw_affiliation_string":"Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5051867731"],"corresponding_institution_ids":["https://openalex.org/I136199984"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.2635,"has_fulltext":false,"cited_by_count":98,"citation_normalized_percentile":{"value":0.95472879,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"16","issue":"10","first_page":"e1008387","last_page":"e1008387"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antiparallel","display_name":"Antiparallel (mathematics)","score":0.6080323457717896},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5940168499946594},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.540737509727478},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.46953001618385315},{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.456116646528244},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45272165536880493},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.44979289174079895},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4466552138328552},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.41024303436279297},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.40682724118232727},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36662185192108154},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35667312145233154},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.1923312544822693},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.14678838849067688},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13499003648757935},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11474356055259705}],"concepts":[{"id":"https://openalex.org/C142089489","wikidata":"https://www.wikidata.org/wiki/Q1053976","display_name":"Antiparallel (mathematics)","level":3,"score":0.6080323457717896},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5940168499946594},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.540737509727478},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.46953001618385315},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.456116646528244},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45272165536880493},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.44979289174079895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4466552138328552},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.41024303436279297},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.40682724118232727},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36662185192108154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35667312145233154},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.1923312544822693},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.14678838849067688},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13499003648757935},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11474356055259705},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C115260700","wikidata":"https://www.wikidata.org/wiki/Q11408","display_name":"Magnetic field","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1008387","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008387","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33125376","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33125376","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:861a4ce1370b4358a5d94867c06b03c9","is_oa":true,"landing_page_url":"https://doaj.org/article/861a4ce1370b4358a5d94867c06b03c9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 10, p e1008387 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7657543","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7657543","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008387","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008387","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W1794547353","https://openalex.org/W1842111513","https://openalex.org/W1861164398","https://openalex.org/W1901672014","https://openalex.org/W1964992060","https://openalex.org/W1966500795","https://openalex.org/W1970496435","https://openalex.org/W1983534198","https://openalex.org/W1988409793","https://openalex.org/W1990245422","https://openalex.org/W1990879059","https://openalex.org/W1992852587","https://openalex.org/W1993403357","https://openalex.org/W1998163619","https://openalex.org/W2001916877","https://openalex.org/W2007909703","https://openalex.org/W2011271395","https://openalex.org/W2017875777","https://openalex.org/W2019039775","https://openalex.org/W2020077467","https://openalex.org/W2023957480","https://openalex.org/W2024412145","https://openalex.org/W2031512086","https://openalex.org/W2031611770","https://openalex.org/W2035783320","https://openalex.org/W2043411229","https://openalex.org/W2045895660","https://openalex.org/W2054697783","https://openalex.org/W2055688390","https://openalex.org/W2057892106","https://openalex.org/W2059307882","https://openalex.org/W2064855802","https://openalex.org/W2066673539","https://openalex.org/W2071883352","https://openalex.org/W2077536611","https://openalex.org/W2081561450","https://openalex.org/W2086561953","https://openalex.org/W2091705944","https://openalex.org/W2098271534","https://openalex.org/W2100321825","https://openalex.org/W2102470532","https://openalex.org/W2106462936","https://openalex.org/W2106478835","https://openalex.org/W2109613231","https://openalex.org/W2109638684","https://openalex.org/W2111272410","https://openalex.org/W2115101918","https://openalex.org/W2122914162","https://openalex.org/W2127666750","https://openalex.org/W2128109027","https://openalex.org/W2130479394","https://openalex.org/W2133839648","https://openalex.org/W2137640371","https://openalex.org/W2138122982","https://openalex.org/W2141152740","https://openalex.org/W2142217851","https://openalex.org/W2144120445","https://openalex.org/W2151538750","https://openalex.org/W2152303410","https://openalex.org/W2154775341","https://openalex.org/W2155058605","https://openalex.org/W2155376412","https://openalex.org/W2159548583","https://openalex.org/W2159859043","https://openalex.org/W2160065837","https://openalex.org/W2165410540","https://openalex.org/W2170342148","https://openalex.org/W2171643158","https://openalex.org/W2203997369","https://openalex.org/W2222905085","https://openalex.org/W2225521622","https://openalex.org/W2400250419","https://openalex.org/W2522585255","https://openalex.org/W2554065905","https://openalex.org/W2594366997","https://openalex.org/W2764077044","https://openalex.org/W2766848373","https://openalex.org/W2978806968","https://openalex.org/W3005389897"],"related_works":["https://openalex.org/W2057850916","https://openalex.org/W4386361828","https://openalex.org/W2061103938","https://openalex.org/W2029624882","https://openalex.org/W2607456967","https://openalex.org/W2158031555","https://openalex.org/W2954092143","https://openalex.org/W2347162849","https://openalex.org/W2020496613","https://openalex.org/W1540181017"],"abstract_inverted_index":{"Knowing":[0],"the":[1,50,143],"structure":[2,22,47,62,117,145],"of":[3,15,30,93,123],"conserved":[4,20,45],"structural":[5],"RNAs":[6],"is":[7],"important":[8],"to":[9,42,60,68],"elucidate":[10],"their":[11],"function":[12],"and":[13,33,63,126],"mechanism":[14],"action.":[16],"However,":[17],"predicting":[18],"a":[19,28,40,44,91,115,120],"RNA":[21,46,61],"remains":[23],"unreliable,":[24],"even":[25],"when":[26],"using":[27],"combination":[29],"thermodynamic":[31],"stability":[32],"evolutionary":[34,74],"covariation":[35,58,66,83,101],"information.":[36],"Here":[37],"we":[38],"present":[39,163],"method":[41],"predict":[43],"that":[48,77,97,165],"combines":[49],"following":[51],"three":[52],"features.":[53],"First,":[54],"it":[55,71,89],"uses":[56,72,90],"significant":[57,82],"due":[59,67],"removes":[64],"spurious":[65],"phylogeny.":[69],"Second,":[70],"negative":[73],"information:":[75],"basepairs":[76,132],"have":[78],"variation":[79],"but":[80],"no":[81],"are":[84,168],"prevented":[85],"from":[86,173],"occurring.":[87],"Lastly,":[88],"battery":[92],"probabilistic":[94],"folding":[95],"algorithms":[96],"incorporate":[98],"all":[99,129],"positive":[100,124,131],"into":[102,133],"one":[103],"structure.":[104],"The":[105,136],"method,":[106],"named":[107],"CaCoFold":[108,166],"(Cascade":[109],"variation/covariation":[110],"Constrained":[111],"Folding":[112],"algorithm),":[113],"predicts":[114],"nested":[116,144],"guided":[118],"by":[119],"maximal":[121],"subset":[122],"basepairs,":[125],"recursively":[127],"incorporates":[128],"remaining":[130],"alternative":[134,137],"helices.":[135],"helices":[138],"can":[139],"be":[140],"compatible":[141],"with":[142,170],"such":[146,151],"as":[147,152],"pseudoknots,":[148],"or":[149,157],"overlapping":[150],"competing":[153],"structures,":[154],"base":[155],"triplets,":[156],"other":[158],"3D":[159],"non-antiparallel":[160],"interactions.":[161],"We":[162],"evidence":[164],"predictions":[167],"consistent":[169],"structures":[171],"modeled":[172],"crystallography.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
