{"id":"https://openalex.org/W3108822698","doi":"https://doi.org/10.1371/journal.pcbi.1008386","title":"Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits","display_name":"Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits","publication_year":2020,"publication_date":"2020-11-30","ids":{"openalex":"https://openalex.org/W3108822698","doi":"https://doi.org/10.1371/journal.pcbi.1008386","mag":"3108822698","pmid":"https://pubmed.ncbi.nlm.nih.gov/33253147"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008386","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008386","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008386&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008386&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043864471","display_name":"Kael Dai","orcid":"https://orcid.org/0000-0002-2147-5895"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kael Dai","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2147-5895","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038918859","display_name":"Sergey L. Gratiy","orcid":"https://orcid.org/0000-0001-8911-2321"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey L. Gratiy","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-8911-2321","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070306612","display_name":"Yazan N. Billeh","orcid":"https://orcid.org/0000-0001-5200-4992"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yazan N. Billeh","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-5200-4992","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101697808","display_name":"Richard Xu","orcid":"https://orcid.org/0000-0002-8249-1514"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Xu","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8249-1514","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038278967","display_name":"Binghuang Cai","orcid":"https://orcid.org/0000-0002-0348-0690"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Binghuang Cai","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013522573","display_name":"Nicholas Cain","orcid":"https://orcid.org/0000-0002-5848-199X"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Cain","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5848-199X","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017686235","display_name":"Atle E. Rimehaug","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Atle E. Rimehaug","raw_affiliation_strings":["Norwegian University of Life Sciences & University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-8312-9875","affiliations":[{"raw_affiliation_string":"Norwegian University of Life Sciences & University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I54108979","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066901898","display_name":"A. Stasik","orcid":"https://orcid.org/0000-0003-1646-2472"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Alexander J. Stasik","raw_affiliation_strings":["Norwegian University of Life Sciences & University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0003-1646-2472","affiliations":[{"raw_affiliation_string":"Norwegian University of Life Sciences & University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I54108979","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032715711","display_name":"Gaute T. Einevoll","orcid":"https://orcid.org/0000-0002-5425-5012"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Gaute T. Einevoll","raw_affiliation_strings":["Norwegian University of Life Sciences & University of Oslo, Oslo, Norway"],"raw_orcid":"https://orcid.org/0000-0002-5425-5012","affiliations":[{"raw_affiliation_string":"Norwegian University of Life Sciences & University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I54108979","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072126704","display_name":"\u015etefan Mihala\u015f","orcid":"https://orcid.org/0000-0002-2629-7100"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Mihalas","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2629-7100","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084822308","display_name":"Christof Koch","orcid":"https://orcid.org/0000-0001-6482-8067"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christof Koch","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6482-8067","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000306868","display_name":"Anton Arkhipov","orcid":"https://orcid.org/0000-0003-1106-8310"},"institutions":[{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anton Arkhipov","raw_affiliation_strings":["Allen Institute, Seattle, Washington, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-1106-8310","affiliations":[{"raw_affiliation_string":"Allen Institute, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5000306868"],"corresponding_institution_ids":["https://openalex.org/I4210140341"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.7522,"has_fulltext":true,"cited_by_count":69,"citation_normalized_percentile":{"value":0.94213915,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"16","issue":"11","first_page":"e1008386","last_page":"e1008386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8421776294708252},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8276175260543823},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6685544848442078},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.5847012996673584},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.47788846492767334},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46513622999191284},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4529995322227478},{"id":"https://openalex.org/keywords/neural-coding","display_name":"Neural coding","score":0.4199766516685486},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37848961353302},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3308671712875366},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2326858937740326},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12957516312599182}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8421776294708252},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8276175260543823},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6685544848442078},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.5847012996673584},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.47788846492767334},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46513622999191284},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4529995322227478},{"id":"https://openalex.org/C77637269","wikidata":"https://www.wikidata.org/wiki/Q7002051","display_name":"Neural coding","level":2,"score":0.4199766516685486},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37848961353302},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3308671712875366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2326858937740326},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12957516312599182},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055592","descriptor_name":"Biophysical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055592","descriptor_name":"Biophysical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055592","descriptor_name":"Biophysical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055592","descriptor_name":"Biophysical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008386","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008386","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008386&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33253147","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33253147","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1008386","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008386","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:5bade63031044794803202c7bca03c50","is_oa":true,"landing_page_url":"https://doaj.org/article/5bade63031044794803202c7bca03c50","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 11, p e1008386 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7728187","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7728187","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/83114","is_oa":true,"landing_page_url":"http://urn.nb.no/URN:NBN:no-85880","pdf_url":null,"source":{"id":"https://openalex.org/S4306401717","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1553-734X","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008386","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008386","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008386&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G388406880","display_name":null,"funder_award_id":"300504","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G6376233427","display_name":null,"funder_award_id":"250128","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"}],"funders":[{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320329713","display_name":"Utdannings- og forskningsdepartementet","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3108822698.pdf","grobid_xml":"https://content.openalex.org/works/W3108822698.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W87495839","https://openalex.org/W602834913","https://openalex.org/W1139015881","https://openalex.org/W1581369451","https://openalex.org/W1582051163","https://openalex.org/W1969564013","https://openalex.org/W1973275441","https://openalex.org/W1983634702","https://openalex.org/W1983940462","https://openalex.org/W1984374486","https://openalex.org/W1984390450","https://openalex.org/W2008401262","https://openalex.org/W2013186737","https://openalex.org/W2018027127","https://openalex.org/W2036587395","https://openalex.org/W2039814229","https://openalex.org/W2045695914","https://openalex.org/W2046152692","https://openalex.org/W2067702957","https://openalex.org/W2071007053","https://openalex.org/W2081432059","https://openalex.org/W2087861759","https://openalex.org/W2088646672","https://openalex.org/W2106203611","https://openalex.org/W2112946102","https://openalex.org/W2127950479","https://openalex.org/W2139703748","https://openalex.org/W2140886546","https://openalex.org/W2143816834","https://openalex.org/W2145085279","https://openalex.org/W2165586822","https://openalex.org/W2174507656","https://openalex.org/W2288000703","https://openalex.org/W2462392276","https://openalex.org/W2466282698","https://openalex.org/W2536349837","https://openalex.org/W2547275900","https://openalex.org/W2547568088","https://openalex.org/W2548021123","https://openalex.org/W2548385112","https://openalex.org/W2557674987","https://openalex.org/W2560814907","https://openalex.org/W2566261885","https://openalex.org/W2580559781","https://openalex.org/W2585140933","https://openalex.org/W2596596521","https://openalex.org/W2803307559","https://openalex.org/W2807113328","https://openalex.org/W2885652098","https://openalex.org/W2887010925","https://openalex.org/W2898761938","https://openalex.org/W2908833350","https://openalex.org/W2911077895","https://openalex.org/W2919574227","https://openalex.org/W2945174113","https://openalex.org/W2945993299","https://openalex.org/W2949311293","https://openalex.org/W2949450205","https://openalex.org/W2950613784","https://openalex.org/W2950651308","https://openalex.org/W2950833128","https://openalex.org/W2950958538","https://openalex.org/W2981246850","https://openalex.org/W3002575160","https://openalex.org/W3009038067","https://openalex.org/W3009954736","https://openalex.org/W3018284161","https://openalex.org/W3022709937","https://openalex.org/W3124792448","https://openalex.org/W4214775604","https://openalex.org/W6757445688","https://openalex.org/W6945108720"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W1516095885","https://openalex.org/W2158573927","https://openalex.org/W2108921801","https://openalex.org/W4206079007","https://openalex.org/W1981336497","https://openalex.org/W2398058485","https://openalex.org/W254965819","https://openalex.org/W4205365843","https://openalex.org/W3156231268"],"abstract_inverted_index":{"Experimental":[0],"studies":[1],"in":[2,147],"neuroscience":[3],"are":[4],"producing":[5],"data":[6,41],"at":[7,63],"a":[8,54,93,132,142],"rapidly":[9],"increasing":[10],"rate,":[11],"providing":[12],"exciting":[13],"opportunities":[14],"and":[15,21,60,82,89],"formidable":[16],"challenges":[17],"to":[18,72,74,107,119,128],"existing":[19,83],"theoretical":[20],"modeling":[22],"approaches.":[23,76],"To":[24],"turn":[25],"massive":[26],"datasets":[27],"into":[28,42],"predictive":[29],"quantitative":[30],"frameworks,":[31],"the":[32,49,78,148],"field":[33],"needs":[34],"software":[35,55,84],"solutions":[36],"for":[37,57],"systematic":[38],"integration":[39],"of":[40,66,100,126,131],"realistic,":[43],"multiscale":[44],"models.":[45],"Here":[46],"we":[47],"describe":[48],"Brain":[50],"Modeling":[51],"ToolKit":[52],"(BMTK),":[53],"suite":[56],"building":[58],"models":[59],"performing":[61],"simulations":[62,106,130],"multiple":[64,98],"levels":[65,99],"resolution,":[67],"from":[68],"biophysically":[69],"detailed":[70],"multi-compartmental,":[71],"point-neuron,":[73],"population-statistical":[75],"Leveraging":[77],"SONATA":[79],"file":[80],"format":[81],"such":[85],"as":[86,141],"NEURON,":[87],"NEST,":[88],"others,":[90],"BMTK":[91,127,135],"offers":[92],"consistent":[94],"user":[95],"experience":[96],"across":[97],"resolution.":[101],"It":[102],"permits":[103],"highly":[104],"sophisticated":[105],"be":[108],"set":[109],"up":[110],"with":[111],"little":[112],"coding":[113],"required,":[114],"thus":[115],"lowering":[116],"entry":[117],"barriers":[118],"new":[120],"users.":[121],"We":[122],"illustrate":[123],"successful":[124],"applications":[125],"large-scale":[129],"cortical":[133],"area.":[134],"is":[136],"an":[137],"open-source":[138],"package":[139],"provided":[140],"resource":[143],"supporting":[144],"modeling-based":[145],"discovery":[146],"community.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}
