{"id":"https://openalex.org/W3186781242","doi":"https://doi.org/10.1371/journal.pcbi.1008380","title":"On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo","display_name":"On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo","publication_year":2021,"publication_date":"2021-09-03","ids":{"openalex":"https://openalex.org/W3186781242","doi":"https://doi.org/10.1371/journal.pcbi.1008380","mag":"3186781242","pmid":"https://pubmed.ncbi.nlm.nih.gov/34478440"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008380","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008380","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1008380","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009063953","display_name":"Charles\u2010Elie Rabier","orcid":"https://orcid.org/0000-0002-6736-877X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Charles-Elie Rabier","raw_affiliation_strings":["Institut Montpelli\u00e9rain Alexander Grothendieck (IMAG), Universit\u00e9 de Montpellier, CNRS, Montpellier, France","Institut des Sciences de l'Evolution (ISEM), Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, Montpellier, France","Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0002-6736-877X","affiliations":[{"raw_affiliation_string":"Institut Montpelli\u00e9rain Alexander Grothendieck (IMAG), Universit\u00e9 de Montpellier, CNRS, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307"]},{"raw_affiliation_string":"Institut des Sciences de l'Evolution (ISEM), Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058327913","display_name":"Vincent Berry","orcid":"https://orcid.org/0000-0001-7271-4027"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Berry","raw_affiliation_strings":["Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087033319","display_name":"Marnus Stoltz","orcid":"https://orcid.org/0000-0002-5118-5223"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marnus Stoltz","raw_affiliation_strings":["Institut des Sciences de l'Evolution (ISEM), Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0002-5118-5223","affiliations":[{"raw_affiliation_string":"Institut des Sciences de l'Evolution (ISEM), Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101540356","display_name":"Jo\u00e3o D. Santos","orcid":"https://orcid.org/0000-0002-4548-4606"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o D. Santos","raw_affiliation_strings":["Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales (AGAP), Universit\u00e9 de Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France","CIRAD, UMR AGAP, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0002-4548-4606","affiliations":[{"raw_affiliation_string":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales (AGAP), Universit\u00e9 de Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210120904","https://openalex.org/I4210136436"]},{"raw_affiliation_string":"CIRAD, UMR AGAP, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100720713","display_name":"Wensheng Wang","orcid":"https://orcid.org/0000-0002-8842-3432"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wensheng Wang","raw_affiliation_strings":["Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-8842-3432","affiliations":[{"raw_affiliation_string":"Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210158190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061840870","display_name":"Jean-Christophe Glaszmann","orcid":null},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Christophe Glaszmann","raw_affiliation_strings":["Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales (AGAP), Universit\u00e9 de Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France","CIRAD, UMR AGAP, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales (AGAP), Universit\u00e9 de Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210120904","https://openalex.org/I4210136436"]},{"raw_affiliation_string":"CIRAD, UMR AGAP, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071954558","display_name":"Fabio Pardi","orcid":"https://orcid.org/0000-0001-8084-1464"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabio Pardi","raw_affiliation_strings":["Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0001-8084-1464","affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier (LIRMM), Universit\u00e9 de Montpellier, CNRS, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057284934","display_name":"C\u00e9line Scornavacca","orcid":"https://orcid.org/0009-0004-0179-9771"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Celine Scornavacca","raw_affiliation_strings":["Institut des Sciences de l'Evolution (ISEM), Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut des Sciences de l'Evolution (ISEM), Universit\u00e9 de Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5009063953","https://openalex.org/A5057284934"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210105943","https://openalex.org/I4210166444"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2115,"currency":"EUR","value_usd":2281},"fwci":1.4079,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.8139962,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"17","issue":"9","first_page":"e1008380","last_page":"e1008380"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.9711999893188477,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.7626640796661377},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.5722783803939819},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5526061654090881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5167307257652283},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5014586448669434},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47786515951156616},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.4750671088695526},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3802255094051361},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3632316589355469},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3464964032173157},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3072410821914673},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24502873420715332},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2056865394115448},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.19707822799682617},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19258588552474976},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.13322144746780396},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.12870609760284424},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06296765804290771}],"concepts":[{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.7626640796661377},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.5722783803939819},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5526061654090881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5167307257652283},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5014586448669434},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47786515951156616},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.4750671088695526},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3802255094051361},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3632316589355469},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3464964032173157},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3072410821914673},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24502873420715332},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2056865394115448},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.19707822799682617},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19258588552474976},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.13322144746780396},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.12870609760284424},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06296765804290771}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.1008380","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008380","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:34478440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34478440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-03287030v2","is_oa":true,"landing_page_url":"https://hal.science/hal-03287030","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2021, 17 (9), pp.e1008380. &#x27E8;10.1371/journal.pcbi.1008380&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:lirmm-04027842v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-04027842","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JOBIM 2020 - 20e Journ\u00e9es Ouvertes de Biologie, Informatique et Math\u00e9matique","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:RePEc:plo:pcbi00:1008380","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008380","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:agritrop.cirad.fr:600263","is_oa":true,"landing_page_url":"http://agritrop.cirad.fr/600263/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:98f4faaef9124aaabff69bd651787efe","is_oa":true,"landing_page_url":"https://doaj.org/article/98f4faaef9124aaabff69bd651787efe","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 9, p e1008380 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:7337295","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8445492","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8445492","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8445492","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008380","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008380","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G1166658832","display_name":"MUSE","funder_award_id":"ANR-16-IDEX-0006","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1185957321","display_name":null,"funder_award_id":"ANR\u201016\u2010IDEX\u2010","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1366889336","display_name":null,"funder_award_id":"10-LABX-04-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1529352272","display_name":null,"funder_award_id":"ANR\u201016\u2010IDEX\u20100006","funder_id":"https://openalex.org/F4320317508","funder_display_name":"Centre M\u00e9diterran\u00e9en de l\u2019Environnement et de la Biodiversit\u00e9"},{"id":"https://openalex.org/G1798922140","display_name":null,"funder_award_id":"ANR-10- LABX-04-01","funder_id":"https://openalex.org/F4320317508","funder_display_name":"Centre M\u00e9diterran\u00e9en de l\u2019Environnement et de la Biodiversit\u00e9"},{"id":"https://openalex.org/G2483067034","display_name":"Organisation et mont\u00e9e en puissance d'une Infrastructure Nationale de G\u00e9nomique","funder_award_id":"ANR-10-INBS-0009","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2684608129","display_name":null,"funder_award_id":"ANR-16-IDEX-0006","funder_id":"https://openalex.org/F4320324952","funder_display_name":"Universit\u00e9 de Montpellier"},{"id":"https://openalex.org/G3010527862","display_name":null,"funder_award_id":"ANR\u201019","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4339915036","display_name":"Agricultural Sciences for sustainable Development","funder_award_id":"ANR-10-LABX-0001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4714068872","display_name":null,"funder_award_id":"ANR\u201010\u2010 LABX\u201004\u201001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4861204962","display_name":"Mediterranean Center for Environment and Biodiversity","funder_award_id":"ANR-10-LABX-0004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5206321527","display_name":null,"funder_award_id":"1504-006","funder_id":"https://openalex.org/F4320324228","funder_display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement"},{"id":"https://openalex.org/G5420063140","display_name":null,"funder_award_id":"ANR-16","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5802621812","display_name":null,"funder_award_id":"ANR-11-INBS","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6068764742","display_name":"Institut fran\u00e7ais de bioinformatique","funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7376787254","display_name":null,"funder_award_id":"ANR-10-LABX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7645525560","display_name":"Combining Combinatorial Algorithms and Sequence-Based Phylogeny Reconstruction Methods to Infer Meaningful Explicit Phylogenetic Networks","funder_award_id":"ANR-19-CE45-0012","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320317508","display_name":"Centre M\u00e9diterran\u00e9en de l\u2019Environnement et de la Biodiversit\u00e9","ror":null},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320324228","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04"},{"id":"https://openalex.org/F4320324952","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72"},{"id":"https://openalex.org/F4320328356","display_name":"R\u00e9gion Occitanie Pyr\u00e9n\u00e9es-M\u00e9diterran\u00e9e","ror":null},{"id":"https://openalex.org/F4320329182","display_name":"Consortium of International Agricultural Research Centers","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":89,"referenced_works":["https://openalex.org/W216063383","https://openalex.org/W1507039213","https://openalex.org/W1527128109","https://openalex.org/W1600112846","https://openalex.org/W1638410732","https://openalex.org/W1772827403","https://openalex.org/W1849663075","https://openalex.org/W1897064680","https://openalex.org/W1964547306","https://openalex.org/W1979100126","https://openalex.org/W1985336821","https://openalex.org/W1989923963","https://openalex.org/W1998459277","https://openalex.org/W2004096961","https://openalex.org/W2006066143","https://openalex.org/W2019956985","https://openalex.org/W2020089203","https://openalex.org/W2026062398","https://openalex.org/W2038120864","https://openalex.org/W2058198256","https://openalex.org/W2058401000","https://openalex.org/W2058815839","https://openalex.org/W2060425093","https://openalex.org/W2061596350","https://openalex.org/W2067121015","https://openalex.org/W2069739265","https://openalex.org/W2074514640","https://openalex.org/W2088484367","https://openalex.org/W2093260114","https://openalex.org/W2097734528","https://openalex.org/W2107508473","https://openalex.org/W2111874385","https://openalex.org/W2117665706","https://openalex.org/W2121166240","https://openalex.org/W2129250527","https://openalex.org/W2131400772","https://openalex.org/W2135713257","https://openalex.org/W2137510730","https://openalex.org/W2139050004","https://openalex.org/W2139367848","https://openalex.org/W2141282191","https://openalex.org/W2145608399","https://openalex.org/W2148723086","https://openalex.org/W2159279060","https://openalex.org/W2161021958","https://openalex.org/W2162336040","https://openalex.org/W2168175751","https://openalex.org/W2168852102","https://openalex.org/W2168907268","https://openalex.org/W2170323879","https://openalex.org/W2298818844","https://openalex.org/W2303542186","https://openalex.org/W2319462502","https://openalex.org/W2345610960","https://openalex.org/W2501702369","https://openalex.org/W2532924211","https://openalex.org/W2560165052","https://openalex.org/W2616265326","https://openalex.org/W2728285811","https://openalex.org/W2780368517","https://openalex.org/W2798915093","https://openalex.org/W2800434159","https://openalex.org/W2801159594","https://openalex.org/W2802437177","https://openalex.org/W2805227996","https://openalex.org/W2810624951","https://openalex.org/W2888343454","https://openalex.org/W2900489094","https://openalex.org/W2901954177","https://openalex.org/W2915947510","https://openalex.org/W2916798890","https://openalex.org/W2938292019","https://openalex.org/W2950175395","https://openalex.org/W2950861047","https://openalex.org/W2951570719","https://openalex.org/W2952540487","https://openalex.org/W2952712909","https://openalex.org/W2962725223","https://openalex.org/W2969728419","https://openalex.org/W2999580712","https://openalex.org/W3009288150","https://openalex.org/W3087071515","https://openalex.org/W4233815609","https://openalex.org/W4241651029","https://openalex.org/W4243187486","https://openalex.org/W4246728774","https://openalex.org/W4254268221","https://openalex.org/W4324131978","https://openalex.org/W4404725644"],"related_works":["https://openalex.org/W2151689585","https://openalex.org/W2380816257","https://openalex.org/W3087071515","https://openalex.org/W4283726152","https://openalex.org/W1525770572","https://openalex.org/W4312203868","https://openalex.org/W1485888979","https://openalex.org/W2069013776","https://openalex.org/W3172507773","https://openalex.org/W2806680938"],"abstract_inverted_index":{"For":[0],"various":[1],"species,":[2],"high":[3],"quality":[4],"sequences":[5],"and":[6,89,180,214,282],"complete":[7],"genomes":[8,105],"are":[9,65,200],"nowadays":[10],"available":[11,144],"for":[12,191,258],"many":[13],"individuals.":[14],"This":[15,111],"makes":[16],"data":[17,37,270],"analysis":[18],"challenging,":[19],"as":[20,84,126,145,171],"methods":[21,167,190,220],"need":[22],"not":[23],"only":[24],"to":[25,38,48,78,96,140,164,224,247],"be":[26,248],"accurate,":[27],"but":[28,228],"also":[29,161],"time":[30,256],"efficient":[31,46],"given":[32],"the":[33,50,56,98,116,129,136,149,155,175,259],"tremendous":[34],"amount":[35],"of":[36,53,68,100,118,148,178,212,255,286],"process.":[39],"In":[40],"this":[41],"article,":[42],"we":[43,209],"introduce":[44],"an":[45,66],"method":[47,123,131],"infer":[49],"evolutionary":[51,133],"history":[52],"individuals":[54],"under":[55,135],"multispecies":[57,137],"coalescent":[58,138],"model":[59,79,177],"in":[60,159,183,253],"networks":[61,64,182],"(MSNC).":[62],"Phylogenetic":[63],"extension":[67],"phylogenetic":[69],"trees":[70,134],"that":[71,199,218,276],"can":[72],"contain":[73],"reticulate":[74],"nodes,":[75],"which":[76],"allow":[77],"complex":[80,237,242],"biological":[81],"events":[82],"such":[83,109],"horizontal":[85],"gene":[86],"transfer,":[87],"hybridization":[88],"introgression.":[90],"We":[91,216,262],"present":[92],"a":[93,119,146,184,268,274],"novel":[94],"way":[95],"compute":[97],"likelihood":[99,112,260],"biallelic":[101,169],"markers":[102,170],"sampled":[103],"along":[104],"whose":[106],"evolution":[107,179],"involved":[108],"events.":[110],"computation":[113],"is":[114,143,230,245,277],"at":[115],"heart":[117],"Bayesian":[120,185],"network":[121,238],"inference":[122],"called":[124],"SnappNet,":[125],"it":[127],"extends":[128],"Snapp":[130,163],"inferring":[132],"model,":[139],"networks.":[141,165,206],"SnappNet":[142,195,213,229,244,265,272],"package":[147],"well-known":[150],"beast":[151],"2":[152],"software.":[153],"Recently,":[154],"MCMC_BiMarkers":[156,234,252],"method,":[157],"implemented":[158],"PhyloNet,":[160],"extended":[162],"Both":[166],"take":[168],"input,":[172],"rely":[173],"on":[174,197,204,235,241,267],"same":[176],"sample":[181],"framework,":[186],"though":[187],"using":[188],"different":[189],"computing":[192],"priors.":[193],"However,":[194],"relies":[196],"algorithms":[198],"exponentially":[201],"more":[202,231,236],"time-efficient":[203],"non-trivial":[205],"Using":[207],"simulations,":[208],"compare":[210],"performances":[211,266],"MCMC_BiMarkers.":[215],"show":[217],"both":[219],"enjoy":[221],"similar":[222],"abilities":[223],"recover":[225],"simple":[226],"networks,":[227,243],"accurate":[232],"than":[233,251],"scenarios.":[239],"Also,":[240],"found":[246],"extremely":[249],"faster":[250],"terms":[254],"required":[257],"computation.":[261],"finally":[263],"illustrate":[264],"rice":[269,287],"set.":[271],"infers":[273],"scenario":[275],"consistent":[278],"with":[279],"previous":[280],"results":[281],"provides":[283],"additional":[284],"understanding":[285],"evolution.":[288]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
