{"id":"https://openalex.org/W3093612691","doi":"https://doi.org/10.1371/journal.pcbi.1008357","title":"Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis","display_name":"Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis","publication_year":2020,"publication_date":"2020-10-20","ids":{"openalex":"https://openalex.org/W3093612691","doi":"https://doi.org/10.1371/journal.pcbi.1008357","mag":"3093612691","pmid":"https://pubmed.ncbi.nlm.nih.gov/33079933"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008357","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008357","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1008357","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000470629","display_name":"Ruijin Wu","orcid":"https://orcid.org/0000-0001-7309-3584"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruijin Wu","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059389111","display_name":"Rahul Prabhu","orcid":"https://orcid.org/0000-0003-4481-2230"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rahul Prabhu","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074593301","display_name":"Aysegul Ozkan","orcid":"https://orcid.org/0000-0003-4331-3771"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aysegul Ozkan","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089647969","display_name":"Meera Sitharam","orcid":"https://orcid.org/0000-0003-1031-1403"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Meera Sitharam","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089647969"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.3213,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.63437993,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"16","issue":"10","first_page":"e1008357","last_page":"e1008357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/capsid","display_name":"Capsid","score":0.9013475179672241},{"id":"https://openalex.org/keywords/icosahedral-symmetry","display_name":"Icosahedral symmetry","score":0.8002848625183105},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5412946939468384},{"id":"https://openalex.org/keywords/minute-virus-of-mice","display_name":"Minute virus of mice","score":0.45933428406715393},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40991637110710144},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.36489182710647583},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.32262122631073},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3108925521373749},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2889147996902466},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.2686484456062317}],"concepts":[{"id":"https://openalex.org/C202878990","wikidata":"https://www.wikidata.org/wiki/Q830465","display_name":"Capsid","level":3,"score":0.9013475179672241},{"id":"https://openalex.org/C113709186","wikidata":"https://www.wikidata.org/wiki/Q5986738","display_name":"Icosahedral symmetry","level":2,"score":0.8002848625183105},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5412946939468384},{"id":"https://openalex.org/C2776668709","wikidata":"https://www.wikidata.org/wiki/Q16985860","display_name":"Minute virus of mice","level":5,"score":0.45933428406715393},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40991637110710144},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.36489182710647583},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.32262122631073},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3108925521373749},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2889147996902466},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.2686484456062317},{"id":"https://openalex.org/C2780727368","wikidata":"https://www.wikidata.org/wiki/Q1928978","display_name":"Viral disease","level":3,"score":0.0},{"id":"https://openalex.org/C2778561560","wikidata":"https://www.wikidata.org/wiki/Q13210344","display_name":"Parvoviridae","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000229","descriptor_name":"Dependovirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008915","descriptor_name":"Minute Virus of Mice","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016297","descriptor_name":"Mutagenesis, Site-Directed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016297","descriptor_name":"Mutagenesis, Site-Directed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016297","descriptor_name":"Mutagenesis, Site-Directed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016297","descriptor_name":"Mutagenesis, Site-Directed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019065","descriptor_name":"Virus Assembly","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019065","descriptor_name":"Virus Assembly","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019065","descriptor_name":"Virus Assembly","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019065","descriptor_name":"Virus Assembly","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D036022","descriptor_name":"Capsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008357","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008357","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33079933","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33079933","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:2001.00316","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2001.00316","pdf_url":"https://arxiv.org/pdf/2001.00316","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1008357","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008357","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:4de01790984348df83364549e15196d9","is_oa":true,"landing_page_url":"https://doaj.org/article/4de01790984348df83364549e15196d9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 10, p e1008357 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7598928","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7598928","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008357","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008357","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G257083437","display_name":null,"funder_award_id":"DMS-1563234","funder_id":"https://openalex.org/F4320337380","funder_display_name":"Division of Mathematical Sciences"},{"id":"https://openalex.org/G3216178052","display_name":"AF: Small: Splines on Optimal Crystallographic Lattices","funder_award_id":"1117695","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3953922089","display_name":"Multiscale  Macromolecular Assembly Pathways  via  Algebraic  Combinatorics","funder_award_id":"0714912","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4631841048","display_name":null,"funder_award_id":"1563234","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4683422242","display_name":null,"funder_award_id":"1564480","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6625329753","display_name":null,"funder_award_id":"CCF-1117695","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7958992381","display_name":null,"funder_award_id":"DMS-0714912","funder_id":"https://openalex.org/F4320337380","funder_display_name":"Division of Mathematical Sciences"},{"id":"https://openalex.org/G829238173","display_name":null,"funder_award_id":"DMS-1564480","funder_id":"https://openalex.org/F4320337380","funder_display_name":"Division of Mathematical Sciences"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8620596636","display_name":null,"funder_award_id":"CCF-1117695","funder_id":"https://openalex.org/F4320337387","funder_display_name":"Division of Computing and Communication Foundations"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337380","display_name":"Division of Mathematical Sciences","ror":"https://ror.org/051fftw81"},{"id":"https://openalex.org/F4320337387","display_name":"Division of Computing and Communication Foundations","ror":"https://ror.org/01mng8331"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":99,"referenced_works":["https://openalex.org/W781095272","https://openalex.org/W967480768","https://openalex.org/W1438791329","https://openalex.org/W1503601820","https://openalex.org/W1534828991","https://openalex.org/W1594252667","https://openalex.org/W1934148123","https://openalex.org/W1968089259","https://openalex.org/W1968993610","https://openalex.org/W1989181256","https://openalex.org/W1992815312","https://openalex.org/W1993458076","https://openalex.org/W1994992677","https://openalex.org/W1998063251","https://openalex.org/W2001347103","https://openalex.org/W2006696157","https://openalex.org/W2006956070","https://openalex.org/W2009681413","https://openalex.org/W2011691446","https://openalex.org/W2023152464","https://openalex.org/W2023444347","https://openalex.org/W2025580242","https://openalex.org/W2027802290","https://openalex.org/W2029863180","https://openalex.org/W2030314693","https://openalex.org/W2033350048","https://openalex.org/W2038510021","https://openalex.org/W2038827564","https://openalex.org/W2041435284","https://openalex.org/W2042346587","https://openalex.org/W2046254858","https://openalex.org/W2048095530","https://openalex.org/W2048917743","https://openalex.org/W2049238377","https://openalex.org/W2055938504","https://openalex.org/W2058241222","https://openalex.org/W2058601882","https://openalex.org/W2060610156","https://openalex.org/W2060953134","https://openalex.org/W2076147133","https://openalex.org/W2078507839","https://openalex.org/W2087591739","https://openalex.org/W2088592752","https://openalex.org/W2088595675","https://openalex.org/W2098914939","https://openalex.org/W2103276457","https://openalex.org/W2105176806","https://openalex.org/W2112632190","https://openalex.org/W2115617296","https://openalex.org/W2116903488","https://openalex.org/W2121563903","https://openalex.org/W2126860461","https://openalex.org/W2128443165","https://openalex.org/W2132783825","https://openalex.org/W2139063911","https://openalex.org/W2139411356","https://openalex.org/W2139460682","https://openalex.org/W2141230915","https://openalex.org/W2141236766","https://openalex.org/W2146344101","https://openalex.org/W2150381702","https://openalex.org/W2155466708","https://openalex.org/W2158227678","https://openalex.org/W2162452471","https://openalex.org/W2164133670","https://openalex.org/W2164379005","https://openalex.org/W2167450165","https://openalex.org/W2169257419","https://openalex.org/W2340451092","https://openalex.org/W2343807323","https://openalex.org/W2481634284","https://openalex.org/W2520782926","https://openalex.org/W2560705618","https://openalex.org/W2603552761","https://openalex.org/W2623660146","https://openalex.org/W2739876930","https://openalex.org/W2752322282","https://openalex.org/W2760809392","https://openalex.org/W2784043257","https://openalex.org/W2786125552","https://openalex.org/W2804077736","https://openalex.org/W2890285536","https://openalex.org/W2895146543","https://openalex.org/W2896681342","https://openalex.org/W2922101907","https://openalex.org/W2953103783","https://openalex.org/W2963510297","https://openalex.org/W2970703744","https://openalex.org/W2973588605","https://openalex.org/W2990560395","https://openalex.org/W3007221501","https://openalex.org/W3008066294","https://openalex.org/W3047538127","https://openalex.org/W3102294777","https://openalex.org/W4241494395","https://openalex.org/W4288947431","https://openalex.org/W4300873364","https://openalex.org/W6640324131","https://openalex.org/W6838957149"],"related_works":["https://openalex.org/W2171409124","https://openalex.org/W2076046734","https://openalex.org/W2556545910","https://openalex.org/W1797747900","https://openalex.org/W2004300505","https://openalex.org/W1990164388","https://openalex.org/W2626939867","https://openalex.org/W4367053569","https://openalex.org/W2072577521","https://openalex.org/W2809344635"],"abstract_inverted_index":{"Icosahedral":[0],"viruses":[1],"are":[2,45],"under":[3],"a":[4,13,17,82,177,254],"micrometer":[5],"in":[6,99,152],"diameter,":[7],"their":[8],"infectious":[9],"genome":[10],"encapsulated":[11],"by":[12,16,93,150,176],"shell":[14],"assembled":[15],"multiscale":[18,219],"process,":[19],"starting":[20],"from":[21,217],"an":[22,117,138,160,198],"integer":[23],"multiple":[24],"of":[25,50,53,66,116,137,170,190,197,203,222,266],"60":[26],"viral":[27,55],"capsid":[28,142,154,205,236],"or":[29,279],"coat":[30],"protein":[31],"(VP)":[32],"monomers.":[33],"We":[34,101],"predict":[35,112,134],"and":[36,63,77,129,181,188,240,264,272,276],"validate":[37],"inter-atomic":[38,225],"hotspot":[39,224],"interactions":[40,226],"between":[41,125],"VP":[42,127],"monomers":[43],"that":[44],"important":[46],"for":[47,119,140,200],"the":[48,109,113,131,135,145,153,194,204,215],"assembly":[49,191,202],"3":[51,85],"types":[52],"icosahedral":[54],"capsids:":[56],"Adeno":[57],"Associated":[58],"Virus":[59,65,80],"serotype":[60],"2":[61],"(AAV2)":[62],"Minute":[64],"Mice":[67],"(MVM),":[68],"both":[69],"T":[70,83],"=":[71,84],"1":[72],"single":[73,86],"stranded":[74,87],"DNA":[75],"viruses,":[76],"Bromo":[78],"Mosaic":[79],"(BMV),":[81],"RNA":[88],"virus.":[89],"Experimental":[90],"validation":[91,228],"is":[92,162,206],"in-vitro,":[94],"site-directed":[95,232],"mutagenesis":[96],"data":[97,230],"found":[98],"literature.":[100],"combine":[102],"ab-initio":[103],"predictions":[104,221,269],"at":[105,108,130],"two":[106],"scales:":[107],"interface-scale,":[110,146],"we":[111,133,147],"importance":[114],"(cruciality)":[115],"interaction":[118,161],"successful":[120,141,201],"subassembly":[121,172],"across":[122],"each":[123],"interface":[124,139,171,199,252],"symmetry-related":[126],"monomers;":[128],"capsid-scale,":[132,195],"cruciality":[136,149,196],"assembly.":[143,237],"At":[144,193],"measure":[148],"changes":[151],"free-energy":[155],"landscape":[156],"partition":[157,165],"function":[158,166],"when":[159],"removed.":[163],"The":[164],"computation":[167],"uses":[168],"atlases":[169],"landscapes,":[173],"rapidly":[174,241],"generated":[175],"novel":[178],"geometric":[179],"method":[180],"curated":[182],"opensource":[183],"software":[184],"EASAL":[185],"(efficient":[186],"atlasing":[187],"search":[189],"landscapes).":[192],"based":[207],"on":[208,231,235,253],"combinatorial":[209],"entropy.":[210],"Our":[211],"study":[212],"goes":[213],"all":[214],"way":[216],"resource-light,":[218],"computational":[220],"crucial":[223],"to":[227],"using":[229],"mutagenesis'":[233],"effect":[234],"By":[238],"reliably":[239],"narrowing":[242],"down":[243],"target":[244],"interactions,":[245],"(no":[246],"more":[247,280],"than":[248],"1.5":[249],"hours":[250],"per":[251],"laptop":[255],"with":[256],"Intel":[257],"Core":[258],"i5-2500K":[259],"@":[260],"3.2":[261],"Ghz":[262],"CPU":[263],"8GB":[265],"RAM)":[267],"our":[268],"can":[270],"inform":[271],"reduce":[273],"time-consuming":[274],"in-vitro":[275],"in-vivo":[277],"experiments,":[278],"computationally":[281],"intensive":[282],"in-silico":[283],"analyses.":[284]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
