{"id":"https://openalex.org/W3093859022","doi":"https://doi.org/10.1371/journal.pcbi.1008281","title":"Ten simple rules for biologists initiating a collaboration with computer scientists","display_name":"Ten simple rules for biologists initiating a collaboration with computer scientists","publication_year":2020,"publication_date":"2020-10-22","ids":{"openalex":"https://openalex.org/W3093859022","doi":"https://doi.org/10.1371/journal.pcbi.1008281","mag":"3093859022","pmid":"https://pubmed.ncbi.nlm.nih.gov/33091012"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008281","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008281","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008281&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008281&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067616652","display_name":"Monika \u010cechov\u00e1","orcid":"https://orcid.org/0000-0002-7420-2663"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210118976","display_name":"Veterinary Research Institute","ror":"https://ror.org/02zyjt610","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210118976"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Monika Cechova","raw_affiliation_strings":["Central European Institute of Technology (CEITEC), Genetics and Reproductive Biotechnologies, Veterinary Research Institute, Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-7420-2663","affiliations":[{"raw_affiliation_string":"Central European Institute of Technology (CEITEC), Genetics and Reproductive Biotechnologies, Veterinary Research Institute, Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210118976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067616652"],"corresponding_institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210118976"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.2989,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.53314284,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"16","issue":"10","first_page":"e1008281","last_page":"e1008281"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6578643321990967},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5564762949943542},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5149141550064087},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4686441123485565},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.1683155596256256},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09649905562400818}],"concepts":[{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6578643321990967},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5564762949943542},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5149141550064087},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4686441123485565},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.1683155596256256},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09649905562400818},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D003142","descriptor_name":"Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003142","descriptor_name":"Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003142","descriptor_name":"Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":true},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1008281","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008281","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008281&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33091012","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33091012","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:56b314d65e504110905f9599060210d2","is_oa":true,"landing_page_url":"https://doaj.org/article/56b314d65e504110905f9599060210d2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 10, p e1008281 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7580977","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7580977","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008281","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008281","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008281&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3496015395","display_name":null,"funder_award_id":"LQ1601","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"},{"id":"https://openalex.org/G5005566375","display_name":null,"funder_award_id":"CEITEC 2020","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"}],"funders":[{"id":"https://openalex.org/F4320323870","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093859022.pdf","grobid_xml":"https://content.openalex.org/works/W3093859022.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2055913285","https://openalex.org/W2177002043","https://openalex.org/W2566224772"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2390279801","https://openalex.org/W2144385241","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"Biology":[0],"is":[1,65,114,176,188],"increasingly":[2],"digital,":[3],"and":[4,17,30,63,143,149,195],"scientists":[5],"are":[6],"generating":[7],"huge":[8],"amounts":[9],"of":[10,88,91,99,135,141,172],"data":[11,29,123],"daily,":[12],"turning":[13],"molecules":[14],"into":[15],"sequences":[16],"text":[18,103],"files.As":[19],"a":[20,35,138,147,186],"biologist,":[21],"you":[22,70,118,126,197],"might":[23,46,74,101],"need":[24],"help":[25],"analyzing":[26,120],"all":[27,130],"these":[28],"have":[31,47,127,145],"considered":[32],"collaborating":[33],"with":[34],"computer":[36,60],"scientist":[37],"for":[38],"the":[39,66,89,170,191],"first,":[40],"second,":[41],"or":[42,189],"third":[43],"time.This":[44],"person":[45],"some":[48,87,98],"training":[49],"in":[50],"computational":[51],"biology,":[52],"but":[53,81],"their":[54],"main":[55],"focus":[56],"has":[57],"always":[58],"been":[59],"science":[61],"(CS),":[62],"here":[64],"challenge:":[67],"how":[68,153],"do":[69,84],"talk":[71],"to":[72,77,151,154,161],"them?They":[73],"be":[75,119],"able":[76],"write":[78],"efficient":[79],"code,":[80],"they":[82,93],"often":[83],"not":[85,166],"know":[86],"basics":[90],"biology.When":[92],"look":[94],"at":[95],"your":[96,121],"molecules,":[97],"them":[100],"see":[102],"files":[104],"before":[105],"biology.Also,":[106],"if":[107],"explaining":[108],"things":[109],"takes":[110],"so":[111],"much":[112],"time,":[113],"it":[115],"worth":[116],"it?Should":[117],"own":[122],"instead?Or":[124],"perhaps":[125],"noticed":[128],"that":[129],"those":[131],"big,":[132],"shiny":[133],"papers":[134],"today":[136],"represent":[137],"smart":[139],"blend":[140],"biology":[142],"CS.You":[144],"found":[146],"collaborator":[148],"want":[150],"learn":[152],"engage":[155],"them.These":[156],"10":[157],"simple":[158],"rules":[159],"aim":[160],"help.":[162],"Rule":[163],"2:":[164],"Do":[165],"judge":[167],"knowledge":[168,175],"gapsEven":[169],"lack":[171],"most":[173],"basic":[174],"okay.People":[177],"can":[178],"live":[179],"happy":[180],"lives":[181],"without":[182],"ever":[183],"knowing":[184],"what":[185],"centromere":[187],"understanding":[190],"difference":[192],"between":[193],"meiosis":[194],"mitosis.If":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2025-10-10T00:00:00"}
