{"id":"https://openalex.org/W3080769788","doi":"https://doi.org/10.1371/journal.pcbi.1008049","title":"Template-based mapping of dynamic motifs in tissue morphogenesis","display_name":"Template-based mapping of dynamic motifs in tissue morphogenesis","publication_year":2020,"publication_date":"2020-08-21","ids":{"openalex":"https://openalex.org/W3080769788","doi":"https://doi.org/10.1371/journal.pcbi.1008049","mag":"3080769788","pmid":"https://pubmed.ncbi.nlm.nih.gov/32822341"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008049","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008049","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008049&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008049&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081367646","display_name":"Tomer Stern","orcid":"https://orcid.org/0000-0003-4279-3558"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tomer Stern","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America","Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4279-3558","affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012005058","display_name":"Stanislav Y. Shvartsman","orcid":"https://orcid.org/0000-0002-9152-9334"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I4210107338","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210107338"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stanislav Y. Shvartsman","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute - Simons Foundation, New York, United States of America","Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America","The Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute - Simons Foundation, New York, United States of America","institution_ids":["https://openalex.org/I4210107338"]},{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"The Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083154783","display_name":"Eric Wieschaus","orcid":"https://orcid.org/0000-0002-0727-3349"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eric F. Wieschaus","raw_affiliation_strings":["Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","The Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"The Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081367646","https://openalex.org/A5083154783"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.3589,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.85467522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"8","first_page":"e1008049","last_page":"e1008049"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9732000231742859,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9732000231742859,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9725000262260437,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12813","display_name":"Plant and Biological Electrophysiology Studies","score":0.9379000067710876,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subsequence","display_name":"Subsequence","score":0.6479381322860718},{"id":"https://openalex.org/keywords/morphogenesis","display_name":"Morphogenesis","score":0.621527910232544},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5930876135826111},{"id":"https://openalex.org/keywords/dynamic-time-warping","display_name":"Dynamic time warping","score":0.5194525122642517},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.424124538898468},{"id":"https://openalex.org/keywords/convergent-extension","display_name":"Convergent extension","score":0.42274200916290283},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31192708015441895},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2625764012336731},{"id":"https://openalex.org/keywords/gastrulation","display_name":"Gastrulation","score":0.15849590301513672},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15260273218154907},{"id":"https://openalex.org/keywords/embryo","display_name":"Embryo","score":0.15007036924362183},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14370596408843994}],"concepts":[{"id":"https://openalex.org/C137877099","wikidata":"https://www.wikidata.org/wiki/Q1332977","display_name":"Subsequence","level":3,"score":0.6479381322860718},{"id":"https://openalex.org/C40692019","wikidata":"https://www.wikidata.org/wiki/Q815547","display_name":"Morphogenesis","level":3,"score":0.621527910232544},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5930876135826111},{"id":"https://openalex.org/C88516994","wikidata":"https://www.wikidata.org/wiki/Q1268863","display_name":"Dynamic time warping","level":2,"score":0.5194525122642517},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.424124538898468},{"id":"https://openalex.org/C192586883","wikidata":"https://www.wikidata.org/wiki/Q5166400","display_name":"Convergent extension","level":5,"score":0.42274200916290283},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31192708015441895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2625764012336731},{"id":"https://openalex.org/C129536746","wikidata":"https://www.wikidata.org/wiki/Q1141026","display_name":"Gastrulation","level":4,"score":0.15849590301513672},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15260273218154907},{"id":"https://openalex.org/C196843134","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryo","level":2,"score":0.15007036924362183},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14370596408843994},{"id":"https://openalex.org/C87073359","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryogenesis","level":3,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C34388435","wikidata":"https://www.wikidata.org/wiki/Q2267362","display_name":"Bounded function","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002455","descriptor_name":"Cell Division","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002455","descriptor_name":"Cell Division","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002455","descriptor_name":"Cell Division","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002455","descriptor_name":"Cell Division","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009024","descriptor_name":"Morphogenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009024","descriptor_name":"Morphogenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009024","descriptor_name":"Morphogenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009024","descriptor_name":"Morphogenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1008049","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008049","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008049&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32822341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32822341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1008049","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008049","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:1be6a931df8643718b99209889d98c80","is_oa":true,"landing_page_url":"https://doaj.org/article/1be6a931df8643718b99209889d98c80","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 8, p e1008049 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7442231","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7442231","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008049","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008049","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008049&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2761564225","display_name":null,"funder_award_id":"PHY-1748958","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2999570164","display_name":null,"funder_award_id":"Grant No. NSF PHY-1748958","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4811335110","display_name":"Data-driven Models of Cell Communication in Embryos","funder_award_id":"1516970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5367345578","display_name":null,"funder_award_id":"MCB 1516970","funder_id":"https://openalex.org/F4320307844","funder_display_name":"European Molecular Biology Organization"},{"id":"https://openalex.org/G661064289","display_name":null,"funder_award_id":"ALTF 215-2017","funder_id":"https://openalex.org/F4320307844","funder_display_name":"European Molecular Biology Organization"},{"id":"https://openalex.org/G8497063558","display_name":null,"funder_award_id":"1748958","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320307844","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810"},{"id":"https://openalex.org/F4320309292","display_name":"Princeton University","ror":"https://ror.org/00hx57361"},{"id":"https://openalex.org/F4320310264","display_name":"University of Nebraska-Lincoln","ror":"https://ror.org/043mer456"},{"id":"https://openalex.org/F4320321449","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3080769788.pdf","grobid_xml":"https://content.openalex.org/works/W3080769788.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W158464399","https://openalex.org/W1592870802","https://openalex.org/W1763429581","https://openalex.org/W1897507705","https://openalex.org/W1982517873","https://openalex.org/W1992172233","https://openalex.org/W2009972529","https://openalex.org/W2032242258","https://openalex.org/W2035059721","https://openalex.org/W2035125794","https://openalex.org/W2035266602","https://openalex.org/W2039260438","https://openalex.org/W2045464049","https://openalex.org/W2055043387","https://openalex.org/W2056922353","https://openalex.org/W2060181845","https://openalex.org/W2069925342","https://openalex.org/W2071139408","https://openalex.org/W2079512245","https://openalex.org/W2095430101","https://openalex.org/W2098047064","https://openalex.org/W2128061541","https://openalex.org/W2128160875","https://openalex.org/W2130735747","https://openalex.org/W2131724314","https://openalex.org/W2135384218","https://openalex.org/W2158167845","https://openalex.org/W2160041854","https://openalex.org/W2167279371","https://openalex.org/W2170160122","https://openalex.org/W2199077840","https://openalex.org/W2202281155","https://openalex.org/W2237117893","https://openalex.org/W2237477120","https://openalex.org/W2238135223","https://openalex.org/W2276651706","https://openalex.org/W2285281870","https://openalex.org/W2405708533","https://openalex.org/W2465080433","https://openalex.org/W2523721607","https://openalex.org/W2524118270","https://openalex.org/W2530992238","https://openalex.org/W2539637916","https://openalex.org/W2549146357","https://openalex.org/W2566902699","https://openalex.org/W2593964925","https://openalex.org/W2601263235","https://openalex.org/W2601679020","https://openalex.org/W2610675381","https://openalex.org/W2751884145","https://openalex.org/W2754057568","https://openalex.org/W2785943060","https://openalex.org/W2875119922","https://openalex.org/W2884974871","https://openalex.org/W2950140480","https://openalex.org/W2963366575","https://openalex.org/W2964062467","https://openalex.org/W2980495500","https://openalex.org/W2992286562","https://openalex.org/W3147178137","https://openalex.org/W3152157423","https://openalex.org/W4247817378"],"related_works":["https://openalex.org/W2554075302","https://openalex.org/W2407016153","https://openalex.org/W2401021740","https://openalex.org/W1964543066","https://openalex.org/W4288621574","https://openalex.org/W1878264211","https://openalex.org/W1591808084","https://openalex.org/W2912005565","https://openalex.org/W2810872865","https://openalex.org/W2470694417"],"abstract_inverted_index":{"Tissue":[0],"morphogenesis":[1,196],"relies":[2],"on":[3,97],"repeated":[4],"use":[5],"of":[6,12,35,63,80,105,120,160,170,184,188,194,206],"dynamic":[7,38,92],"behaviors":[8,39,163],"at":[9],"the":[10,33,78,106,117,151,182],"levels":[11],"intracellular":[13],"structures,":[14],"individual":[15],"cells,":[16],"and":[17,31,48,88,123,166,175,181],"cell":[18,133,137,145,162,190],"groups.":[19],"Rapidly":[20],"accumulating":[21],"live":[22],"imaging":[23],"datasets":[24],"make":[25],"it":[26,42,90],"increasingly":[27],"important":[28],"to":[29,65,114],"formalize":[30],"automate":[32],"task":[34,79],"mapping":[36,62,82],"recurrent":[37],"(motifs),":[40],"as":[41,83,132],"is":[43],"done":[44],"in":[45,150,164,173,178],"speech":[46],"recognition":[47],"other":[49],"data":[50,73],"mining":[51,74],"applications.":[52],"Here,":[53],"we":[54,143],"present":[55],"a":[56,70,84,185],"\"template-based":[57],"search\"":[58],"approach":[59],"for":[60,102,203],"accurate":[61],"sub-":[64],"multi-cellular":[66],"morphogenetic":[67],"motifs":[68],"using":[69,91,197],"time":[71,93,198],"series":[72,199],"framework.":[75],"We":[76],"formulated":[77],"motif":[81],"subsequence":[85],"matching":[86],"problem":[87],"solved":[89],"warping,":[94],"while":[95],"relying":[96],"high":[98],"throughput":[99],"graph-theoretic":[100],"algorithms":[101],"efficient":[103],"exploration":[104],"search":[107],"space.":[108],"This":[109],"formulation":[110,193],"allows":[111],"our":[112,141],"algorithm":[113],"accurately":[115],"identify":[116],"complete":[118],"duration":[119],"each":[121],"instance":[122],"automatically":[124],"label":[125],"different":[126,179],"stages":[127],"throughout":[128],"its":[129],"progress,":[130],"such":[131],"cycle":[134],"phases":[135],"during":[136,147],"division.":[138],"To":[139],"illustrate":[140],"approach,":[142],"mapped":[144],"intercalations":[146],"germband":[148],"extension":[149],"early":[152],"Drosophila":[153],"embryo.":[154],"Our":[155,192],"framework":[156],"enabled":[157],"statistical":[158],"analysis":[159],"intercalary":[161],"wild-type":[165],"mutant":[167],"embryos,":[168],"comparison":[169],"temporal":[171],"dynamics":[172],"contracting":[174],"growing":[176],"junctions":[177],"genotypes,":[180],"identification":[183],"novel":[186],"mode":[187],"iterative":[189],"intercalation.":[191],"tissue":[195,207],"opens":[200],"new":[201],"avenues":[202],"systematic":[204],"decomposition":[205],"morphogenesis.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}