{"id":"https://openalex.org/W3044595157","doi":"https://doi.org/10.1371/journal.pcbi.1008007","title":"Nine quick tips for efficient bioinformatics curriculum development and training","display_name":"Nine quick tips for efficient bioinformatics curriculum development and training","publication_year":2020,"publication_date":"2020-07-23","ids":{"openalex":"https://openalex.org/W3044595157","doi":"https://doi.org/10.1371/journal.pcbi.1008007","mag":"3044595157","pmid":"https://pubmed.ncbi.nlm.nih.gov/32702019"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008007","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008007","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008007&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008007&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022849334","display_name":"Susan McClatchy","orcid":"https://orcid.org/0000-0003-3219-2177"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Susan McClatchy","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, Maine, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3219-2177","affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, Maine, United States of America","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090074910","display_name":"Kristin M. Bass","orcid":"https://orcid.org/0000-0001-7487-2109"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kristin M. Bass","raw_affiliation_strings":["Rockman et al, San Francisco, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-7487-2109","affiliations":[{"raw_affiliation_string":"Rockman et al, San Francisco, California, United States of America","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030457099","display_name":"Daniel M. Gatti","orcid":"https://orcid.org/0000-0003-0667-9926"},"institutions":[{"id":"https://openalex.org/I142509341","display_name":"College of the Atlantic","ror":"https://ror.org/00n5re093","country_code":"US","type":"education","lineage":["https://openalex.org/I142509341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel M. Gatti","raw_affiliation_strings":["College of the Atlantic, Bar Harbor, Maine, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of the Atlantic, Bar Harbor, Maine, United States of America","institution_ids":["https://openalex.org/I142509341"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058214258","display_name":"Adam Moylan","orcid":"https://orcid.org/0000-0003-1773-9963"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Adam Moylan","raw_affiliation_strings":["Rockman et al, San Francisco, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-1773-9963","affiliations":[{"raw_affiliation_string":"Rockman et al, San Francisco, California, United States of America","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012821611","display_name":"Gary A. Churchill","orcid":"https://orcid.org/0000-0001-9190-9284"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary Churchill","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, Maine, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-9190-9284","affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, Maine, United States of America","institution_ids":["https://openalex.org/I4210115256"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5022849334"],"corresponding_institution_ids":["https://openalex.org/I4210115256"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.3344,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.57308575,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"16","issue":"7","first_page":"e1008007","last_page":"e1008007"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9258999824523926,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/curriculum","display_name":"Curriculum","score":0.69837486743927},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6685092449188232},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.526584804058075},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.49759677052497864},{"id":"https://openalex.org/keywords/training","display_name":"Training (meteorology)","score":0.43608585000038147},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.06454887986183167}],"concepts":[{"id":"https://openalex.org/C47177190","wikidata":"https://www.wikidata.org/wiki/Q207137","display_name":"Curriculum","level":2,"score":0.69837486743927},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6685092449188232},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.526584804058075},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.49759677052497864},{"id":"https://openalex.org/C2777211547","wikidata":"https://www.wikidata.org/wiki/Q17141490","display_name":"Training (meteorology)","level":2,"score":0.43608585000038147},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.06454887986183167},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005246","descriptor_name":"Feedback","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005246","descriptor_name":"Feedback","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005246","descriptor_name":"Feedback","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016730","descriptor_name":"Program Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016730","descriptor_name":"Program Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016730","descriptor_name":"Program Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1008007","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008007","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008007&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32702019","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32702019","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1008007","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008007","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:0d0f7355e0f8457bb7047954190296d2","is_oa":true,"landing_page_url":"https://doaj.org/article/0d0f7355e0f8457bb7047954190296d2","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 7, p e1008007 (2020)","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2020-1150","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2020/152","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2020","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7377369","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7377369","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008007","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008007","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008007&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3044595157.pdf","grobid_xml":"https://content.openalex.org/works/W3044595157.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1593295917","https://openalex.org/W2015159529","https://openalex.org/W2032709693","https://openalex.org/W2076243793","https://openalex.org/W2092511577","https://openalex.org/W2096615112","https://openalex.org/W2098571599","https://openalex.org/W2101234009","https://openalex.org/W2189117689","https://openalex.org/W2527260951","https://openalex.org/W2538305739","https://openalex.org/W2582393726","https://openalex.org/W2742272031","https://openalex.org/W2742478344","https://openalex.org/W2770230381","https://openalex.org/W2950395494","https://openalex.org/W2985957070","https://openalex.org/W2989974843","https://openalex.org/W3017691963","https://openalex.org/W3028208401","https://openalex.org/W3209510049","https://openalex.org/W4210973361","https://openalex.org/W4254038017","https://openalex.org/W4323538519","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W230091440","https://openalex.org/W2390279801","https://openalex.org/W2233261550","https://openalex.org/W2358668433","https://openalex.org/W2810751659","https://openalex.org/W258997015","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"Biomedical":[0],"research":[1,55],"is":[2,23],"becoming":[3],"increasingly":[4],"data":[5,13],"driven.":[6],"New":[7],"technologies":[8],"that":[9,49],"generate":[10],"large-scale,":[11],"complex":[12],"are":[14],"continually":[15],"emerging":[16],"and":[17,32,42],"evolving.":[18],"As":[19],"a":[20,24,54],"result,":[21],"there":[22],"concurrent":[25],"need":[26],"for":[27],"training":[28],"researchers":[29],"to":[30,45,57],"use":[31],"understand":[33],"new":[34],"computational":[35],"tools.":[36],"Here":[37],"we":[38],"describe":[39],"an":[40],"efficient":[41],"effective":[43],"approach":[44],"developing":[46],"curriculum":[47],"materials":[48],"can":[50],"be":[51],"deployed":[52],"in":[53],"environment":[56],"meet":[58],"this":[59],"need.":[60]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
