{"id":"https://openalex.org/W3018864114","doi":"https://doi.org/10.1371/journal.pcbi.1007837","title":"Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species","display_name":"Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species","publication_year":2020,"publication_date":"2020-04-27","ids":{"openalex":"https://openalex.org/W3018864114","doi":"https://doi.org/10.1371/journal.pcbi.1007837","mag":"3018864114","pmid":"https://pubmed.ncbi.nlm.nih.gov/32339161"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007837","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007837","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007837&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007837&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024290991","display_name":"Vinnu Bhardwaj","orcid":"https://orcid.org/0000-0002-6913-2533"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vinnu Bhardwaj","raw_affiliation_strings":["Electrical and Computer Engineering Department, University of California San Diego, San Diego, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6913-2533","affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075999338","display_name":"Massimo Franceschetti","orcid":"https://orcid.org/0000-0002-4057-8152"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Massimo Franceschetti","raw_affiliation_strings":["Electrical and Computer Engineering Department, University of California San Diego, San Diego, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4057-8152","affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113901283","display_name":"Ramesh Rao","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210087596","display_name":"Qualcomm (United States)","ror":"https://ror.org/002zrf773","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087596"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramesh Rao","raw_affiliation_strings":["Electrical and Computer Engineering Department, University of California San Diego, San Diego, California, United States of America","Qualcomm Institute, University of California San Diego, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Qualcomm Institute, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I4210087596","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pavel A. Pevzner","raw_affiliation_strings":["Computer Science and Engineering Department, University of California San Diego, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005373810","display_name":"Yana Safonova","orcid":"https://orcid.org/0000-0002-9634-4216"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yana Safonova","raw_affiliation_strings":["Center for Information Theory and Applications, University of California San Diego, San Diego, California, United States of America","Computer Science and Engineering Department, University of California San Diego, San Diego, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9634-4216","affiliations":[{"raw_affiliation_string":"Center for Information Theory and Applications, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Computer Science and Engineering Department, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5027480961"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.8131,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.70969845,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"4","first_page":"e1007837","last_page":"e1007837"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11725","display_name":"Immunodeficiency and Autoimmune Disorders","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11725","display_name":"Immunodeficiency and Autoimmune Disorders","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10981","display_name":"Cytomegalovirus and herpesvirus research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6934837102890015},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6276947259902954},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6022297143936157},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.5906471014022827},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5775728225708008},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5734731554985046},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.5341196656227112},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.3870747685432434}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6934837102890015},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6276947259902954},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6022297143936157},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.5906471014022827},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5775728225708008},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5734731554985046},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.5341196656227112},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.3870747685432434}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007072","descriptor_name":"Immunoglobulin D","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007072","descriptor_name":"Immunoglobulin D","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007072","descriptor_name":"Immunoglobulin D","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007072","descriptor_name":"Immunoglobulin D","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007109","descriptor_name":"Immunity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007109","descriptor_name":"Immunity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007109","descriptor_name":"Immunity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007109","descriptor_name":"Immunity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007837","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007837","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007837&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32339161","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32339161","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:c2cbb9952bdc44a882f833725872421b","is_oa":true,"landing_page_url":"https://doaj.org/article/c2cbb9952bdc44a882f833725872421b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 4, p e1007837 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/12202061","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7295240","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7295240","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007837","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007837","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007837&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5600000023841858,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3018864114.pdf","grobid_xml":"https://content.openalex.org/works/W3018864114.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W937578315","https://openalex.org/W1546775397","https://openalex.org/W1590219348","https://openalex.org/W1607133945","https://openalex.org/W1974596630","https://openalex.org/W1978831500","https://openalex.org/W2005988541","https://openalex.org/W2010295342","https://openalex.org/W2018339091","https://openalex.org/W2050600340","https://openalex.org/W2051689770","https://openalex.org/W2055519354","https://openalex.org/W2102733876","https://openalex.org/W2103587968","https://openalex.org/W2105273832","https://openalex.org/W2125870772","https://openalex.org/W2163641974","https://openalex.org/W2170654913","https://openalex.org/W2270807784","https://openalex.org/W2283351635","https://openalex.org/W2337033889","https://openalex.org/W2492693765","https://openalex.org/W2510979876","https://openalex.org/W2513558090","https://openalex.org/W2515176087","https://openalex.org/W2527889668","https://openalex.org/W2547929624","https://openalex.org/W2565989705","https://openalex.org/W2578150941","https://openalex.org/W2580786722","https://openalex.org/W2590920329","https://openalex.org/W2594817103","https://openalex.org/W2604809863","https://openalex.org/W2608587261","https://openalex.org/W2616207459","https://openalex.org/W2698408120","https://openalex.org/W2735555064","https://openalex.org/W2753556737","https://openalex.org/W2766374116","https://openalex.org/W2768215828","https://openalex.org/W2810444941","https://openalex.org/W2889496138","https://openalex.org/W2914058860","https://openalex.org/W2922017807","https://openalex.org/W2949783062","https://openalex.org/W2950234903","https://openalex.org/W2952799062","https://openalex.org/W2963188392","https://openalex.org/W2963349742"],"related_works":["https://openalex.org/W4242979853","https://openalex.org/W2119763855","https://openalex.org/W2038017527","https://openalex.org/W1982749768","https://openalex.org/W2050778956","https://openalex.org/W2051997690","https://openalex.org/W2155294402","https://openalex.org/W2057739827","https://openalex.org/W2159625291","https://openalex.org/W4296933316"],"abstract_inverted_index":{"Immunoglobulin":[0],"genes":[1,23,38,48,60,105],"are":[2],"formed":[3],"through":[4],"V(D)J":[5],"recombination,":[6],"which":[7],"joins":[8],"the":[9,53,64,101],"variable":[10],"(V),":[11],"diversity":[12],"(D),":[13],"and":[14,46,99,113],"joining":[15],"(J)":[16],"germline":[17,22,37],"genes.":[18,117],"Since":[19],"variations":[20],"in":[21,69],"have":[24],"been":[25],"linked":[26],"to":[27,91],"various":[28,40],"diseases,":[29],"personalized":[30],"immunogenomics":[31],"focuses":[32],"on":[33],"finding":[34],"alleles":[35],"of":[36,44,57,77,93],"across":[39],"patients.":[41],"Although":[42],"reconstruction":[43],"V":[45,116],"J":[47],"is":[49],"a":[50,81],"well-studied":[51],"problem,":[52],"more":[54],"challenging":[55],"task":[56],"reconstructing":[58],"D":[59,86,104],"remained":[61],"open":[62],"until":[63],"IgScout":[65,78],"algorithm":[66,84],"was":[67],"developed":[68],"2019.":[70],"In":[71],"this":[72],"work,":[73],"we":[74],"address":[75],"limitations":[76],"by":[79,106],"developing":[80],"probabilistic":[82],"MINING-D":[83],"for":[85],"gene":[87],"reconstruction,":[88],"apply":[89],"it":[90],"hundreds":[92],"immunosequencing":[94],"datasets":[95,112],"from":[96],"multiple":[97],"species,":[98],"validate":[100],"newly":[102],"inferred":[103],"analyzing":[107],"diverse":[108],"whole":[109],"genome":[110],"sequencing":[111],"haplotyping":[114],"heterozygous":[115]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
