{"id":"https://openalex.org/W3041731967","doi":"https://doi.org/10.1371/journal.pcbi.1007731","title":"AncesTree: An interactive immunoglobulin lineage tree visualizer","display_name":"AncesTree: An interactive immunoglobulin lineage tree visualizer","publication_year":2020,"publication_date":"2020-07-10","ids":{"openalex":"https://openalex.org/W3041731967","doi":"https://doi.org/10.1371/journal.pcbi.1007731","mag":"3041731967","pmid":"https://pubmed.ncbi.nlm.nih.gov/32649725"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007731","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007731","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007731&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007731&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013371965","display_name":"Mathilde Foglierini","orcid":"https://orcid.org/0000-0001-7538-4262"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I57201433","display_name":"Universit\u00e0 della Svizzera italiana","ror":"https://ror.org/03c4atk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Mathilde Foglierini","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Lausanne, Switzerland","Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-7538-4262","affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I57201433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031899877","display_name":"Leontios Pappas","orcid":null},"institutions":[{"id":"https://openalex.org/I57201433","display_name":"Universit\u00e0 della Svizzera italiana","ror":"https://ror.org/03c4atk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Leontios Pappas","raw_affiliation_strings":["Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I57201433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059965999","display_name":"Antonio Lanzavecchia","orcid":"https://orcid.org/0000-0002-3041-7240"},"institutions":[{"id":"https://openalex.org/I57201433","display_name":"Universit\u00e0 della Svizzera italiana","ror":"https://ror.org/03c4atk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Antonio Lanzavecchia","raw_affiliation_strings":["Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-3041-7240","affiliations":[{"raw_affiliation_string":"Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I57201433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002409017","display_name":"Davide Corti","orcid":"https://orcid.org/0000-0002-5797-1364"},"institutions":[{"id":"https://openalex.org/I4210093995","display_name":"Vir Biotechnology (Switzerland)","ror":"https://ror.org/01ew95g57","country_code":"CH","type":"company","lineage":["https://openalex.org/I4210093995"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Davide Corti","raw_affiliation_strings":["Humabs Biomed SA, Vir Biotechnology, Bellinzona, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-5797-1364","affiliations":[{"raw_affiliation_string":"Humabs Biomed SA, Vir Biotechnology, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I4210093995"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015114088","display_name":"Laurent Perez","orcid":"https://orcid.org/0000-0002-8860-7928"},"institutions":[{"id":"https://openalex.org/I57201433","display_name":"Universit\u00e0 della Svizzera italiana","ror":"https://ror.org/03c4atk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Laurent Perez","raw_affiliation_strings":["Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-8860-7928","affiliations":[{"raw_affiliation_string":"Universit\u00e0 della Svizzera italiana, Faculty of Biomedical Sciences, Institute for Research in Biomedicine, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I57201433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013371965"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I57201433"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.1704,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.77767274,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"7","first_page":"e1007731","last_page":"e1007731"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/affinity-maturation","display_name":"Affinity maturation","score":0.6521555185317993},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6105972528457642},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5347836017608643},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.5341241955757141},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.532923698425293},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.525189995765686},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.48584505915641785},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.46299418807029724},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.45797181129455566},{"id":"https://openalex.org/keywords/antibody-repertoire","display_name":"Antibody Repertoire","score":0.4175456166267395},{"id":"https://openalex.org/keywords/mac-os","display_name":"Mac OS","score":0.4101311266422272},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40012794733047485},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29456937313079834},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24435436725616455},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14950117468833923},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.13731268048286438}],"concepts":[{"id":"https://openalex.org/C2781377902","wikidata":"https://www.wikidata.org/wiki/Q21418769","display_name":"Affinity maturation","level":3,"score":0.6521555185317993},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6105972528457642},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5347836017608643},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.5341241955757141},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.532923698425293},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.525189995765686},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.48584505915641785},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.46299418807029724},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.45797181129455566},{"id":"https://openalex.org/C2910693471","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody Repertoire","level":3,"score":0.4175456166267395},{"id":"https://openalex.org/C522133331","wikidata":"https://www.wikidata.org/wiki/Q43627","display_name":"Mac OS","level":3,"score":0.4101311266422272},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40012794733047485},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29456937313079834},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24435436725616455},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14950117468833923},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.13731268048286438},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1007731","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007731","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007731&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32649725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32649725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:7af123adfe63463ab36d9ea425ef3746","is_oa":true,"landing_page_url":"https://doaj.org/article/7af123adfe63463ab36d9ea425ef3746","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 7, p e1007731 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7375605","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7375605","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007731","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007731","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007731&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3041731967.pdf","grobid_xml":"https://content.openalex.org/works/W3041731967.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W156352715","https://openalex.org/W1604890903","https://openalex.org/W1883768105","https://openalex.org/W1974596630","https://openalex.org/W1978398372","https://openalex.org/W1980811933","https://openalex.org/W1987645022","https://openalex.org/W1993476635","https://openalex.org/W1997311863","https://openalex.org/W2005988541","https://openalex.org/W2021117977","https://openalex.org/W2029525307","https://openalex.org/W2035535371","https://openalex.org/W2038873256","https://openalex.org/W2039239800","https://openalex.org/W2040293984","https://openalex.org/W2047006060","https://openalex.org/W2072457247","https://openalex.org/W2078151980","https://openalex.org/W2084390276","https://openalex.org/W2089041106","https://openalex.org/W2101375662","https://openalex.org/W2113392525","https://openalex.org/W2122796331","https://openalex.org/W2125065061","https://openalex.org/W2126114330","https://openalex.org/W2138067488","https://openalex.org/W2148495628","https://openalex.org/W2170654913","https://openalex.org/W2234728088","https://openalex.org/W2290663115","https://openalex.org/W2317651087","https://openalex.org/W2340112726","https://openalex.org/W2491163602","https://openalex.org/W2521956470","https://openalex.org/W2563378637","https://openalex.org/W2578150941","https://openalex.org/W2582217477","https://openalex.org/W2766414528","https://openalex.org/W2774014537","https://openalex.org/W2784885284","https://openalex.org/W2889633239","https://openalex.org/W2911390449","https://openalex.org/W3102596196","https://openalex.org/W3199943451"],"related_works":["https://openalex.org/W2581256546","https://openalex.org/W2053091829","https://openalex.org/W4323236833","https://openalex.org/W2780245662","https://openalex.org/W179764517","https://openalex.org/W2616207459","https://openalex.org/W3008570337","https://openalex.org/W3092206077","https://openalex.org/W1933308802","https://openalex.org/W2089637072"],"abstract_inverted_index":{"High-throughput":[0],"sequencing":[1,75],"of":[2,8,14,20,26,33,48,66,119],"human":[3],"immunoglobulin":[4,92],"genes":[5],"allows":[6],"analysis":[7,44],"antibody":[9,172],"repertoires":[10],"and":[11,109,163,192],"the":[12,31,46,49,116,146],"reconstruction":[13,118],"clonal":[15,152],"lineage":[16],"evolution.":[17,153],"The":[18,59,174],"study":[19],"antibodies":[21,120,151],"(Abs)":[22],"affinity":[23,37],"maturation":[24,121],"is":[25,176],"specific":[27],"interest":[28],"to":[29,54,89,143,148],"understand":[30],"generation":[32],"Abs":[34],"with":[35,183],"high":[36],"or":[38,130],"broadly":[39],"neutralizing":[40],"activities.":[41],"Moreover,":[42],"phylogenic":[43,94,117,158],"enables":[45],"identification":[47],"key":[50],"somatic":[51],"mutations":[52,162],"required":[53],"achieve":[55],"optimal":[56],"antigen":[57],"binding.":[58],"Immcantation":[60],"framework":[61],"provides":[62],"a":[63,136,177],"start-to-finish":[64],"set":[65],"analytical":[67],"methods":[68],"for":[69,105,115],"high-throughput":[70],"adaptive":[71],"immune":[72],"receptor":[73],"repertoire":[74],"(AIRR-Seq;":[76],"Rep-Seq)":[77],"data.":[78],"Furthermore,":[79],"Immcantation's":[80],"Change-O":[81],"package":[82],"has":[83,101],"developed":[84,104,134],"IgPhyML,":[85],"an":[86,98],"algorithm":[87,99],"designed":[88],"build":[90],"specifically":[91],"(Ig)":[93],"trees.":[95],"Meanwhile":[96],"Phylip,":[97],"that":[100,141,186],"been":[102],"originally":[103],"applications":[106],"in":[107],"ecology":[108],"macroevolution,":[110],"can":[111,187],"also":[112],"be":[113],"used":[114],"pathway.":[122],"To":[123],"complement":[124],"Ig":[125,160,184],"lineages":[126],"made":[127],"by":[128],"IgPhyML":[129],"Dnaml":[131],"(Phylip),":[132],"we":[133],"AncesTree,":[135],"graphic":[137],"user":[138],"interface":[139],"(GUI)":[140],"aims":[142],"give":[144],"researchers":[145],"opportunity":[147],"interactively":[149],"explore":[150],"AncesTree":[154],"displays":[155],"interactive":[156],"immunoglobulins":[157],"tree,":[159],"related":[161],"sequence":[164],"alignments":[165],"using":[166],"additional":[167],"information":[168],"coming":[169],"from":[170],"specialized":[171],"tools.":[173],"GUI":[175],"Java":[178],"standalone":[179],"application":[180],"allowing":[181],"interaction":[182],"tree":[185],"run":[188],"under":[189],"Windows,":[190],"Linux":[191],"Mac":[193],"OS.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
