{"id":"https://openalex.org/W3009038067","doi":"https://doi.org/10.1371/journal.pcbi.1007696","title":"The SONATA data format for efficient description of large-scale network models","display_name":"The SONATA data format for efficient description of large-scale network models","publication_year":2020,"publication_date":"2020-02-24","ids":{"openalex":"https://openalex.org/W3009038067","doi":"https://doi.org/10.1371/journal.pcbi.1007696","mag":"3009038067","pmid":"https://pubmed.ncbi.nlm.nih.gov/32092054"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007696","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007696","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007696&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007696&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043864471","display_name":"Kael Dai","orcid":"https://orcid.org/0000-0002-2147-5895"},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kael Dai","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America","Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)"],"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]},{"raw_affiliation_string":"Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)","institution_ids":["https://openalex.org/I1314596251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060822874","display_name":"Juan Hernando","orcid":"https://orcid.org/0000-0002-8562-8213"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Juan Hernando","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070306612","display_name":"Yazan N. Billeh","orcid":"https://orcid.org/0000-0001-5200-4992"},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yazan N. Billeh","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America","Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)"],"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]},{"raw_affiliation_string":"Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)","institution_ids":["https://openalex.org/I1314596251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038918859","display_name":"Sergey L. Gratiy","orcid":"https://orcid.org/0000-0001-8911-2321"},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey L. Gratiy","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America","Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)"],"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]},{"raw_affiliation_string":"Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)","institution_ids":["https://openalex.org/I1314596251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066561858","display_name":"Judit Planas","orcid":"https://orcid.org/0000-0002-8221-7988"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Judit Planas","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103123296","display_name":"Andrew P. Davison","orcid":"https://orcid.org/0000-0002-4793-7541"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210086740","display_name":"Institut des Neurosciences Paris-Saclay","ror":"https://ror.org/002v40q27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210086740"]},{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Andrew P. Davison","raw_affiliation_strings":["Paris-Saclay Institute of Neuroscience UMR, Centre National de la Recherche Scientifique/Universit\u00e9 Paris-Saclay, Gif-sur-Yvette, France","NeuroPSI - Institut des Neurosciences Paris-Saclay (Centre National de la Recherche Scientifique, Unit\u00e9 Mixte de Recherche-9197 Universit\u00e9 Paris-Saclay\r\nCampus CEA Saclay, B\u00e2t. 151\r\n151 route de la Rotonde\r\n91400 Saclay - France)"],"affiliations":[{"raw_affiliation_string":"Paris-Saclay Institute of Neuroscience UMR, Centre National de la Recherche Scientifique/Universit\u00e9 Paris-Saclay, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210086740"]},{"raw_affiliation_string":"NeuroPSI - Institut des Neurosciences Paris-Saclay (Centre National de la Recherche Scientifique, Unit\u00e9 Mixte de Recherche-9197 Universit\u00e9 Paris-Saclay\r\nCampus CEA Saclay, B\u00e2t. 151\r\n151 route de la Rotonde\r\n91400 Saclay - France)","institution_ids":["https://openalex.org/I4210086740","https://openalex.org/I4210128565","https://openalex.org/I277688954","https://openalex.org/I2738703131"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056426700","display_name":"Salvador Dur\u00e1-Bernal","orcid":"https://orcid.org/0000-0002-8561-5324"},"institutions":[{"id":"https://openalex.org/I125043107","display_name":"Nathan Kline Institute for Psychiatric Research","ror":"https://ror.org/01s434164","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I125043107"]},{"id":"https://openalex.org/I1327163397","display_name":"State University of New York","ror":"https://ror.org/01q1z8k08","country_code":"US","type":"education","lineage":["https://openalex.org/I1327163397"]},{"id":"https://openalex.org/I181697535","display_name":"SUNY Downstate Health Sciences University","ror":"https://ror.org/0041qmd21","country_code":"US","type":"education","lineage":["https://openalex.org/I181697535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Salvador Dura-Bernal","raw_affiliation_strings":["Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America","State University of New York Downstate Medical Center, Brooklyn, New York, United States of America","SUNY Downstate Medical Center (450 Clarkson Ave, Brooklyn, NY 11203, \u00c9tats-Unis - United States)","NKI - Nathan S. Kline Institute for Psychiatric Research (Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962 - United States)"],"affiliations":[{"raw_affiliation_string":"Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America","institution_ids":["https://openalex.org/I125043107"]},{"raw_affiliation_string":"State University of New York Downstate Medical Center, Brooklyn, New York, United States of America","institution_ids":["https://openalex.org/I181697535","https://openalex.org/I1327163397"]},{"raw_affiliation_string":"SUNY Downstate Medical Center (450 Clarkson Ave, Brooklyn, NY 11203, \u00c9tats-Unis - United States)","institution_ids":["https://openalex.org/I181697535"]},{"raw_affiliation_string":"NKI - Nathan S. Kline Institute for Psychiatric Research (Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962 - United States)","institution_ids":["https://openalex.org/I125043107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009493678","display_name":"Padraig Gleeson","orcid":"https://orcid.org/0000-0001-5963-8576"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Padraig Gleeson","raw_affiliation_strings":["Department of Neuroscience, Physiology and Pharmacology, University College London, London, United Kingdom","Department of Neuroscience, Physiology & Pharmacology (London, WC1E 6BT - United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Department of Neuroscience, Physiology and Pharmacology, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Department of Neuroscience, Physiology & Pharmacology (London, WC1E 6BT - United Kingdom)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038852236","display_name":"Adrien Devresse","orcid":"https://orcid.org/0000-0003-0071-3265"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Adrien Devresse","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088656190","display_name":"Ben Dichter","orcid":"https://orcid.org/0000-0001-5725-6910"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin K. Dichter","raw_affiliation_strings":["Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America","Department of Neurosurgery, Stanford University, Stanford, California, United States of America","Department of Neurosurgery [Stanford] (300 Pasteur Drive, Boswell Building, A301 Stanford, CA 94305-5327 - United States)","Biological Systems and Engineering (Lawrence Berkeley National Laboratory, Berkeley, CA - United States)"],"affiliations":[{"raw_affiliation_string":"Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Department of Neurosurgery, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Neurosurgery [Stanford] (300 Pasteur Drive, Boswell Building, A301 Stanford, CA 94305-5327 - United States)","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Biological Systems and Engineering (Lawrence Berkeley National Laboratory, Berkeley, CA - United States)","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026165241","display_name":"Michael Gevaert","orcid":"https://orcid.org/0000-0002-7547-3297"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Gevaert","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091662474","display_name":"James King","orcid":"https://orcid.org/0000-0003-0906-8389"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"James G. King","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020466047","display_name":"Werner Van Geit","orcid":"https://orcid.org/0000-0002-2915-720X"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Werner A. H. Van Geit","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056762769","display_name":"Arseny V. Povolotsky","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Arseny V. Povolotsky","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091722347","display_name":"Eilif M\u00fcller","orcid":"https://orcid.org/0000-0003-4309-8266"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Eilif Muller","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056584440","display_name":"Jean-Denis Courcol","orcid":"https://orcid.org/0000-0002-9351-1461"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jean-Denis Courcol","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)"],"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"EPFL - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (CH-1015 Lausanne, Switzerland  - Switzerland)","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000306868","display_name":"Anton Arkhipov","orcid":"https://orcid.org/0000-0003-1106-8310"},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anton Arkhipov","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America","Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)"],"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]},{"raw_affiliation_string":"Allen Institute for Brain Science [Seattle, WA, USA] (Seattle, WA, USA - United States)","institution_ids":["https://openalex.org/I1314596251"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5000306868"],"corresponding_institution_ids":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.745,"has_fulltext":true,"cited_by_count":75,"citation_normalized_percentile":{"value":0.94003115,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"16","issue":"2","first_page":"e1007696","last_page":"e1007696"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8423482775688171},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6653368473052979},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6070859432220459},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5108129978179932},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.49647217988967896},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.42808935046195984},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.393247127532959},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3533371090888977},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3508719801902771},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.34889814257621765},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1654326617717743}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8423482775688171},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6653368473052979},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6070859432220459},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5108129978179932},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.49647217988967896},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.42808935046195984},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.393247127532959},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3533371090888977},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3508719801902771},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.34889814257621765},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1654326617717743},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001931","descriptor_name":"Brain Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1371/journal.pcbi.1007696","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007696","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007696&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32092054","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32092054","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:soar.suny.edu:20.500.12648/8565","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12648/8565","pdf_url":"https://soar.suny.edu/bitstream/20.500.12648/8565/1/file.pdf","source":{"id":"https://openalex.org/S4306400078","display_name":"SUNY Digital Repository Support (State University of New York System)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63190737","host_organization_name":"University at Buffalo, State University of New York","host_organization_lineage":["https://openalex.org/I63190737"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"United States","raw_type":"Article/Review"},{"id":"pmh:oai:infoscience.epfl.ch:275872","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/166930","pdf_url":"http://infoscience.epfl.ch/record/275872","source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"research article"},{"id":"pmh:oai:osti.gov:1629515","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1629515","pdf_url":"https://www.osti.gov/servlets/purl/1629515","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:HAL:hal-02913116v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02913116","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2020, 16 (2), pp.e1007696. ⟨10.1371/journal.pcbi.1007696⟩","raw_type":"Journal articles"},{"id":"pmh:oai:RePEc:plo:pcbi00:1007696","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007696","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:96cd62f444274b59b61eee3ed7ac4d6c","is_oa":true,"landing_page_url":"https://doaj.org/article/96cd62f444274b59b61eee3ed7ac4d6c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 2, p e1007696 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/11893503","is_oa":true,"landing_page_url":"https://figshare.com/articles/The_SONATA_data_format_for_efficient_description_of_large-scale_network_models/11893503","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:7058350","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7058350","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007696","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007696","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007696&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G1009139939","display_name":null,"funder_award_id":"U19 NS104590","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G1729133508","display_name":null,"funder_award_id":"U19 NS104590","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3130786729","display_name":null,"funder_award_id":"U24EB028998","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497190341","display_name":null,"funder_award_id":"No. 785907 (Human Brain Project SGA2)","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G3568374238","display_name":null,"funder_award_id":"No. 785907 (Human Brain Project SGA2)","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3646449647","display_name":null,"funder_award_id":"101445","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G3677188838","display_name":null,"funder_award_id":"Horizon 2020 Framework Programme for Research","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3897364063","display_name":null,"funder_award_id":"EB017695","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4159693715","display_name":null,"funder_award_id":"R01DC012947","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4175096997","display_name":null,"funder_award_id":"785907","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5766349579","display_name":null,"funder_award_id":"785907","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6607577419","display_name":null,"funder_award_id":"785907","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6750259842","display_name":null,"funder_award_id":"212941","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7170343431","display_name":null,"funder_award_id":"785907 (Human Brain Project SGA2)","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7283776517","display_name":null,"funder_award_id":"DC012947","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8159361754","display_name":null,"funder_award_id":"Human Brain Project","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8222325735","display_name":null,"funder_award_id":"U01EB017695","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8949667757","display_name":null,"funder_award_id":"Specific Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G999653529","display_name":null,"funder_award_id":"Specific Grant Agreement No. 785907 (Human Brain Project SGA2)","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320915","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052"},{"id":"https://openalex.org/F4320331149","display_name":"Board of the Swiss Federal Institutes of Technology","ror":"https://ror.org/01rvn4p91"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3009038067.pdf","grobid_xml":"https://content.openalex.org/works/W3009038067.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W87495839","https://openalex.org/W1513082520","https://openalex.org/W1921182138","https://openalex.org/W1975389666","https://openalex.org/W1984374486","https://openalex.org/W2007529107","https://openalex.org/W2018027127","https://openalex.org/W2037340502","https://openalex.org/W2047951563","https://openalex.org/W2071007053","https://openalex.org/W2087861759","https://openalex.org/W2112151839","https://openalex.org/W2114352872","https://openalex.org/W2127950479","https://openalex.org/W2139513028","https://openalex.org/W2139703748","https://openalex.org/W2140886546","https://openalex.org/W2143816834","https://openalex.org/W2174507656","https://openalex.org/W2179178098","https://openalex.org/W2309258625","https://openalex.org/W2406493898","https://openalex.org/W2414283705","https://openalex.org/W2466282698","https://openalex.org/W2496032671","https://openalex.org/W2536349837","https://openalex.org/W2547275900","https://openalex.org/W2547568088","https://openalex.org/W2548021123","https://openalex.org/W2548385112","https://openalex.org/W2613059020","https://openalex.org/W2807113328","https://openalex.org/W2809940376","https://openalex.org/W2885652098","https://openalex.org/W2887010925","https://openalex.org/W2898350988","https://openalex.org/W2908833350","https://openalex.org/W2945174113","https://openalex.org/W2949311293","https://openalex.org/W2950613784","https://openalex.org/W2950651308","https://openalex.org/W2950833128","https://openalex.org/W2950958538","https://openalex.org/W2950976066","https://openalex.org/W2951103577","https://openalex.org/W2952237862","https://openalex.org/W2971445103","https://openalex.org/W2994737554","https://openalex.org/W3009954736","https://openalex.org/W3022709937","https://openalex.org/W3101658768","https://openalex.org/W3124915050"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2154046714","https://openalex.org/W2189613078","https://openalex.org/W2579659702","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W1965329638","https://openalex.org/W2542318691","https://openalex.org/W3160708108"],"abstract_inverted_index":{"Increasing":[0],"availability":[1],"of":[2,7,21,35,142],"comprehensive":[3],"experimental":[4],"datasets":[5],"and":[6,18,29,43,70,73,83,86,91,107,110,118,129,136,148],"high-performance":[8,44],"computing":[9],"resources":[10],"are":[11],"driving":[12],"rapid":[13],"growth":[14],"in":[15,24,104],"scale,":[16],"complexity,":[17],"biological":[19],"realism":[20],"computational":[22,71],"models":[23],"neuroscience.":[25],"To":[26,49],"support":[27],"construction":[28],"simulation,":[30],"as":[31,33],"well":[32],"sharing":[34],"such":[36],"large-scale":[37],"models,":[38],"a":[39],"broadly":[40],"applicable,":[41],"flexible,":[42],"data":[45,63],"format":[46,79,126],"is":[47,66,102,127],"necessary.":[48],"address":[50],"this":[51],"need,":[52],"we":[53,111],"have":[54],"developed":[55],"the":[56,132,140],"Scalable":[57],"Open":[58],"Network":[59],"Architecture":[60],"TemplAte":[61],"(SONATA)":[62],"format.":[64],"It":[65],"designed":[67],"for":[68,95,131],"memory":[69],"efficiency":[72],"works":[74],"across":[75],"multiple":[76,105],"platforms.":[77],"The":[78],"represents":[80],"neuronal":[81],"circuits":[82],"simulation":[84],"inputs":[85],"outputs":[87],"via":[88],"standardized":[89],"files":[90],"provides":[92],"much":[93],"flexibility":[94],"adding":[96],"new":[97],"conventions":[98],"or":[99],"extensions.":[100],"SONATA":[101,125],"used":[103],"modeling":[106],"visualization":[108],"tools,":[109],"also":[112],"provide":[113],"reference":[114],"Application":[115],"Programming":[116],"Interfaces":[117],"model":[119,145],"examples":[120],"to":[121,134],"catalyze":[122],"further":[123],"adoption.":[124],"free":[128],"open":[130],"community":[133],"use":[135],"build":[137],"upon":[138],"with":[139],"goal":[141],"enabling":[143],"efficient":[144],"building,":[146],"sharing,":[147],"reproducibility.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}