{"id":"https://openalex.org/W3007410099","doi":"https://doi.org/10.1371/journal.pcbi.1007657","title":"Reprogramming of macrophages employing gene regulatory and metabolic network models","display_name":"Reprogramming of macrophages employing gene regulatory and metabolic network models","publication_year":2020,"publication_date":"2020-02-25","ids":{"openalex":"https://openalex.org/W3007410099","doi":"https://doi.org/10.1371/journal.pcbi.1007657","mag":"3007410099","pmid":"https://pubmed.ncbi.nlm.nih.gov/32097424"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007657","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007657","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007657&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007657&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066004063","display_name":"Franziska H\u00f6rhold","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Franziska H\u00f6rhold","raw_affiliation_strings":["Center for Sepsis Control and Care, University Hospital, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Sepsis Control and Care, University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070141158","display_name":"David Eisel","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210134778","display_name":"BioNTech (Germany)","ror":"https://ror.org/04fbd2g40","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210134778"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Eisel","raw_affiliation_strings":["Biopharmaceutical New Technologies (BioNTech) Corporation, Mainz, Germany","Research Group GMP & T Cell Therapy, German Cancer Research Center (DKFZ), Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biopharmaceutical New Technologies (BioNTech) Corporation, Mainz, Germany","institution_ids":["https://openalex.org/I4210134778"]},{"raw_affiliation_string":"Research Group GMP & T Cell Therapy, German Cancer Research Center (DKFZ), Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084196031","display_name":"Marcus Oswald","orcid":"https://orcid.org/0000-0002-0740-7343"},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcus Oswald","raw_affiliation_strings":["Center for Sepsis Control and Care, University Hospital, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Sepsis Control and Care, University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029731619","display_name":"Amol Kolte","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Amol Kolte","raw_affiliation_strings":["Center for Sepsis Control and Care, University Hospital, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Sepsis Control and Care, University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051928851","display_name":"Daniela R\u00f6ll","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniela R\u00f6ll","raw_affiliation_strings":["Center for Sepsis Control and Care, University Hospital, Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Sepsis Control and Care, University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074000830","display_name":"Wolfram Osen","orcid":"https://orcid.org/0000-0002-8451-2040"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfram Osen","raw_affiliation_strings":["Research Group GMP & T Cell Therapy, German Cancer Research Center (DKFZ), Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Group GMP & T Cell Therapy, German Cancer Research Center (DKFZ), Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051859452","display_name":"Stefan B. Eichm\u00fcller","orcid":"https://orcid.org/0000-0002-3497-6904"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan B. Eichm\u00fcller","raw_affiliation_strings":["Research Group GMP & T Cell Therapy, German Cancer Research Center (DKFZ), Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-3497-6904","affiliations":[{"raw_affiliation_string":"Research Group GMP & T Cell Therapy, German Cancer Research Center (DKFZ), Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077200146","display_name":"Rainer K\u00f6nig","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Rainer K\u00f6nig","raw_affiliation_strings":["Center for Sepsis Control and Care, University Hospital, Jena, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6691-3804","affiliations":[{"raw_affiliation_string":"Center for Sepsis Control and Care, University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077200146"],"corresponding_institution_ids":["https://openalex.org/I4210134900"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2561,"currency":"EUR","value_usd":2762},"fwci":3.3663,"has_fulltext":true,"cited_by_count":70,"citation_normalized_percentile":{"value":0.9377742,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"16","issue":"2","first_page":"e1007657","last_page":"e1007657"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10631","display_name":"Cancer, Hypoxia, and Metabolism","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6874068379402161},{"id":"https://openalex.org/keywords/macrophage-polarization","display_name":"Macrophage polarization","score":0.604729950428009},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.5585153698921204},{"id":"https://openalex.org/keywords/reprogramming","display_name":"Reprogramming","score":0.5537673234939575},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5302882790565491},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5061368346214294},{"id":"https://openalex.org/keywords/gene-knockdown","display_name":"Gene knockdown","score":0.5015301704406738},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.45406267046928406},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4484022259712219},{"id":"https://openalex.org/keywords/downregulation-and-upregulation","display_name":"Downregulation and upregulation","score":0.43529146909713745},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41903817653656006},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40969353914260864},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.33312326669692993},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24647828936576843}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6874068379402161},{"id":"https://openalex.org/C2776682551","wikidata":"https://www.wikidata.org/wiki/Q21072584","display_name":"Macrophage polarization","level":4,"score":0.604729950428009},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5585153698921204},{"id":"https://openalex.org/C77255625","wikidata":"https://www.wikidata.org/wiki/Q402093","display_name":"Reprogramming","level":3,"score":0.5537673234939575},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5302882790565491},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5061368346214294},{"id":"https://openalex.org/C173396325","wikidata":"https://www.wikidata.org/wiki/Q1501275","display_name":"Gene knockdown","level":3,"score":0.5015301704406738},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.45406267046928406},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4484022259712219},{"id":"https://openalex.org/C127561419","wikidata":"https://www.wikidata.org/wiki/Q224527","display_name":"Downregulation and upregulation","level":3,"score":0.43529146909713745},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41903817653656006},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40969353914260864},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.33312326669692993},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24647828936576843}],"mesh":[{"descriptor_ui":"D000693","descriptor_name":"Anaerobiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000693","descriptor_name":"Anaerobiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000693","descriptor_name":"Anaerobiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000693","descriptor_name":"Anaerobiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007165","descriptor_name":"Immunosuppression Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007165","descriptor_name":"Immunosuppression Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007165","descriptor_name":"Immunosuppression Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007165","descriptor_name":"Immunosuppression Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007166","descriptor_name":"Immunosuppressive Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007166","descriptor_name":"Immunosuppressive Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007166","descriptor_name":"Immunosuppressive Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007166","descriptor_name":"Immunosuppressive Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007291","descriptor_name":"Inosine Monophosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007291","descriptor_name":"Inosine Monophosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007291","descriptor_name":"Inosine Monophosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007291","descriptor_name":"Inosine Monophosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008262","descriptor_name":"Macrophage Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008262","descriptor_name":"Macrophage Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008262","descriptor_name":"Macrophage Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008262","descriptor_name":"Macrophage Activation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016207","descriptor_name":"Cytokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007657","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007657","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007657&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32097424","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32097424","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7059956","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7059956","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4bba50c0a81b451b884c8ed48721d89e","is_oa":true,"landing_page_url":"https://doaj.org/article/4bba50c0a81b451b884c8ed48721d89e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 2, p e1007657 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/11899590","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Reprogramming_of_macrophages_employing_gene_regulatory_and_metabolic_network_models/11899590","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007657","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007657","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007657&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7799999713897705,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1554100333","display_name":null,"funder_award_id":"01EO1002, 01EO1502, 01ZX1302B, 01ZX1602B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G1848039867","display_name":null,"funder_award_id":"01EO1502","funder_id":"https://openalex.org/F4320336057","funder_display_name":"Center for Sepsis Control and Care"},{"id":"https://openalex.org/G3236928039","display_name":"Integriertes Forschungs- und Behandlungszentrum Sepsis und Sepsisfolgen - Center for Sepsis Control and Care (CSCC)","funder_award_id":"01EO1002","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4608884778","display_name":null,"funder_award_id":"KO 3678/5-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4622697594","display_name":null,"funder_award_id":"01EO1502","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4917316984","display_name":null,"funder_award_id":"01EO1002","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6366691317","display_name":null,"funder_award_id":"01ZX1302B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6664564164","display_name":null,"funder_award_id":"01EO1002 and 01EO1502","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6832934703","display_name":"IFB Center for Sepsis Control & Care","funder_award_id":"01EO1502","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7583286419","display_name":null,"funder_award_id":"01ZX1602B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7897507147","display_name":null,"funder_award_id":"01EO1002","funder_id":"https://openalex.org/F4320336057","funder_display_name":"Center for Sepsis Control and Care"}],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"},{"id":"https://openalex.org/F4320320876","display_name":"Helmholtz-Gemeinschaft","ror":"https://ror.org/0281dp749"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320336057","display_name":"Center for Sepsis Control and Care","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3007410099.pdf","grobid_xml":"https://content.openalex.org/works/W3007410099.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W1518095394","https://openalex.org/W1555183168","https://openalex.org/W1605085109","https://openalex.org/W1611001525","https://openalex.org/W1661143181","https://openalex.org/W1757395087","https://openalex.org/W1965087571","https://openalex.org/W1968235650","https://openalex.org/W1979843175","https://openalex.org/W1984574450","https://openalex.org/W1989090840","https://openalex.org/W1995299599","https://openalex.org/W2017409194","https://openalex.org/W2022720370","https://openalex.org/W2030371558","https://openalex.org/W2034126502","https://openalex.org/W2042207589","https://openalex.org/W2046862942","https://openalex.org/W2050253364","https://openalex.org/W2072775378","https://openalex.org/W2076262841","https://openalex.org/W2076272449","https://openalex.org/W2077796307","https://openalex.org/W2078355959","https://openalex.org/W2087539641","https://openalex.org/W2092250990","https://openalex.org/W2093705034","https://openalex.org/W2096667163","https://openalex.org/W2097476575","https://openalex.org/W2098023402","https://openalex.org/W2098212444","https://openalex.org/W2099830996","https://openalex.org/W2101279189","https://openalex.org/W2109203270","https://openalex.org/W2110905563","https://openalex.org/W2115715091","https://openalex.org/W2115949387","https://openalex.org/W2119781196","https://openalex.org/W2125648352","https://openalex.org/W2126561976","https://openalex.org/W2130022178","https://openalex.org/W2131271579","https://openalex.org/W2133914326","https://openalex.org/W2134828907","https://openalex.org/W2137022175","https://openalex.org/W2138207763","https://openalex.org/W2140729960","https://openalex.org/W2141199651","https://openalex.org/W2150500173","https://openalex.org/W2153586956","https://openalex.org/W2154061034","https://openalex.org/W2162666840","https://openalex.org/W2166211251","https://openalex.org/W2167485774","https://openalex.org/W2179438025","https://openalex.org/W2191059068","https://openalex.org/W2206617731","https://openalex.org/W2231865019","https://openalex.org/W2236965619","https://openalex.org/W2259938310","https://openalex.org/W2267280007","https://openalex.org/W2275548184","https://openalex.org/W2296531152","https://openalex.org/W2411002773","https://openalex.org/W2468925656","https://openalex.org/W2487775973","https://openalex.org/W2611360243","https://openalex.org/W2614034516","https://openalex.org/W2622814797","https://openalex.org/W2649656222","https://openalex.org/W2735818385","https://openalex.org/W2800104946","https://openalex.org/W2913790533","https://openalex.org/W2915129194","https://openalex.org/W2918086501","https://openalex.org/W3150478056","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2966780451","https://openalex.org/W2010571965","https://openalex.org/W2002709996","https://openalex.org/W3128451840","https://openalex.org/W4387092964","https://openalex.org/W2103471012","https://openalex.org/W2966064480","https://openalex.org/W2115810854","https://openalex.org/W2380236774","https://openalex.org/W4317476908"],"abstract_inverted_index":{"Upon":[0],"exposure":[1],"to":[2,31,93,139],"different":[3],"stimuli,":[4],"resting":[5],"macrophages":[6],"undergo":[7],"classical":[8],"or":[9,33],"alternative":[10],"polarization":[11,104],"into":[12,119],"distinct":[13,100],"phenotypes":[14],"that":[15],"can":[16],"cause":[17],"fatal":[18],"dysfunction":[19],"in":[20,71,79,98],"a":[21,77],"large":[22],"range":[23],"of":[24,36,66,102,116,155],"diseases,":[25],"such":[26],"as":[27,122],"systemic":[28],"infection":[29],"leading":[30],"sepsis":[32],"the":[34,64,80,95,99,114,141,152],"generation":[35],"an":[37],"immunosuppressive":[38,156],"tumor":[39],"microenvironment.":[40],"Investigating":[41],"gene":[42,127],"regulatory":[43,84],"and":[44,91,130,144,146],"metabolic":[45,50],"networks,":[46],"we":[47,75,112],"observed":[48,76,113],"two":[49],"switches":[51],"during":[52],"polarization.":[53],"Most":[54],"prominently,":[55],"anaerobic":[56],"glycolysis":[57],"was":[58,69],"utilized":[59],"by":[60,124],"M1-polarized":[61],"macrophages,":[62],"while":[63],"biosynthesis":[65],"inosine":[67],"monophosphate":[68],"upregulated":[70],"M2-polarized":[72],"macrophages.":[73,158],"Moreover,":[74],"switch":[78],"urea":[81],"cycle.":[82],"Gene":[83],"network":[85],"models":[86],"revealed":[87],"E2F1,":[88],"MYC,":[89],"PPAR\u03b3":[90],"STAT6":[92],"be":[94],"major":[96],"players":[97],"signatures":[101,129],"these":[103,110],"events.":[105],"Employing":[106],"functional":[107],"assays":[108],"targeting":[109],"regulators,":[111],"repolarization":[115],"M2-like":[117,142,157],"cells":[118],"M1-like":[120],"cells,":[121],"evidenced":[123],"their":[125],"specific":[126],"expression":[128],"cytokine":[131],"secretion":[132],"profiles.":[133],"The":[134],"predicted":[135],"regulators":[136],"are":[137],"essential":[138],"maintaining":[140],"phenotype":[143],"function":[145],"thus":[147],"represent":[148],"potential":[149],"targets":[150],"for":[151],"therapeutic":[153],"reprogramming":[154]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
