{"id":"https://openalex.org/W3091964700","doi":"https://doi.org/10.1371/journal.pcbi.1007621","title":"FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution","display_name":"FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution","publication_year":2020,"publication_date":"2020-10-09","ids":{"openalex":"https://openalex.org/W3091964700","doi":"https://doi.org/10.1371/journal.pcbi.1007621","mag":"3091964700","pmid":"https://pubmed.ncbi.nlm.nih.gov/33035205"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007621","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007621","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007621&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007621&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026418895","display_name":"Maureen Muscat","orcid":"https://orcid.org/0000-0002-6122-7976"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maureen Muscat","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056715981","display_name":"Giancarlo Croce","orcid":"https://orcid.org/0000-0003-0944-1884"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Giancarlo Croce","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)"],"raw_orcid":"https://orcid.org/0000-0003-0944-1884","affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040250330","display_name":"Edoardo Sarti","orcid":"https://orcid.org/0000-0003-2417-1448"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Edoardo Sarti","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)"],"raw_orcid":"https://orcid.org/0000-0003-2417-1448","affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035771024","display_name":"Martin Weigt","orcid":"https://orcid.org/0000-0002-0492-3684"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Martin Weigt","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)"],"raw_orcid":"https://orcid.org/0000-0002-0492-3684","affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative - LCQB, 75005 Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Sorbonne-Universit\u00e9, Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035771024"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2613,"currency":"EUR","value_usd":2818},"fwci":0.9196,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.73602308,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"16","issue":"10","first_page":"e1007621","last_page":"e1007621"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8883486986160278},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7220120429992676},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6616302132606506},{"id":"https://openalex.org/keywords/coevolution","display_name":"Coevolution","score":0.607166051864624},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5483338832855225},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.522179365158081},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5203287601470947},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4742140769958496},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4666673541069031},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.42216193675994873},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3786966800689697},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3511813282966614},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15981170535087585},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12381547689437866}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8883486986160278},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7220120429992676},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6616302132606506},{"id":"https://openalex.org/C33009525","wikidata":"https://www.wikidata.org/wiki/Q208841","display_name":"Coevolution","level":2,"score":0.607166051864624},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5483338832855225},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.522179365158081},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5203287601470947},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4742140769958496},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4666673541069031},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.42216193675994873},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3786966800689697},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3511813282966614},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15981170535087585},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12381547689437866},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007621","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007621","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007621&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33035205","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33035205","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-02996567v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-02996567","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2020, 16 (10), pp.e1007621. ⟨10.1371/journal.pcbi.1007621⟩","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:57b8cfffd1cf4f39973eb6ce7a875d1e","is_oa":true,"landing_page_url":"https://doaj.org/article/57b8cfffd1cf4f39973eb6ce7a875d1e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 10, p e1007621 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7577475","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7577475","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007621","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007621","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007621&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1675557280","display_name":null,"funder_award_id":"734439","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1789083493","display_name":"LABEX pour la mod\u00e9lisation et la simulation scientifiques en recherche","funder_award_id":"ANR-11-LABX-0037","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3465563395","display_name":null,"funder_award_id":"ANR-11-LABX-0037-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3878940427","display_name":null,"funder_award_id":"MSCA-RISE-2016","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4009746975","display_name":null,"funder_award_id":"ANR-11-IDEX-0004-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4101407039","display_name":null,"funder_award_id":"734439 INFERNET","funder_id":"https://openalex.org/F4320338337","funder_display_name":"H2020 Marie Sk\u0142odowska-Curie Actions"},{"id":"https://openalex.org/G4866930200","display_name":null,"funder_award_id":"ANR-11-IDEX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5003875507","display_name":null,"funder_award_id":"-11-IDEX-0004-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5615659713","display_name":null,"funder_award_id":"IDEX-0004-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6182026652","display_name":null,"funder_award_id":"11-IDEX-0004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6246589203","display_name":null,"funder_award_id":"11-IDEX-0004-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6654833908","display_name":null,"funder_award_id":"ANR-11-IDEX-0004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7331901853","display_name":null,"funder_award_id":"EU H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G8886304095","display_name":null,"funder_award_id":"734439","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338337","display_name":"H2020 Marie Sk\u0142odowska-Curie Actions","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3091964700.pdf","grobid_xml":"https://content.openalex.org/works/W3091964700.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1967292572","https://openalex.org/W1979762151","https://openalex.org/W2008545402","https://openalex.org/W2013425283","https://openalex.org/W2031616673","https://openalex.org/W2051545676","https://openalex.org/W2101234009","https://openalex.org/W2107867854","https://openalex.org/W2131313323","https://openalex.org/W2137566700","https://openalex.org/W2138122982","https://openalex.org/W2166701319","https://openalex.org/W2169478909","https://openalex.org/W2522058963","https://openalex.org/W2574496196","https://openalex.org/W2593619857","https://openalex.org/W2620998958","https://openalex.org/W2742834898","https://openalex.org/W2801109052","https://openalex.org/W2886566245","https://openalex.org/W2890911678","https://openalex.org/W2898402099","https://openalex.org/W2906084236","https://openalex.org/W2949867299","https://openalex.org/W2980272550","https://openalex.org/W2999044305","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W2043066834","https://openalex.org/W1564749278","https://openalex.org/W2294851134","https://openalex.org/W3215498386"],"abstract_inverted_index":{"Predicting":[0],"three-dimensional":[1],"protein":[2,6],"structure":[3,119],"and":[4,73,97,120,152],"assembling":[5],"complexes":[7],"using":[8,32],"sequence":[9,38],"information":[10],"belongs":[11],"to":[12,70],"the":[13,27,68,78,81,104],"most":[14],"prominent":[15],"tasks":[16],"in":[17,26,49,125],"computational":[18],"biology.":[19],"Recently":[20],"substantial":[21],"progress":[22],"has":[23,55],"been":[24],"obtained":[25],"case":[28],"of":[29,35,58,80,109],"single":[30],"proteins":[31,110],"a":[33,56,91],"combination":[34],"unsupervised":[36],"coevolutionary":[37,126,135,146],"analysis":[39],"with":[40,134],"structurally":[41],"supervised":[42,93],"deep":[43,53,75],"learning.":[44],"While":[45],"reaching":[46],"impressive":[47],"accuracies":[48],"predicting":[50],"residue-residue":[51],"contacts,":[52],"learning":[54],"number":[57],"disadvantages.":[59],"The":[60,154],"need":[61],"for":[62,95],"large":[63],"structural":[64],"training":[65],"sets":[66],"limits":[67],"applicability":[69],"multi-protein":[71],"complexes;":[72],"their":[74],"architecture":[76],"makes":[77],"interpretability":[79],"convolutional":[82],"neural":[83],"networks":[84],"intrinsically":[85],"hard.":[86],"Here":[87],"we":[88],"introduce":[89],"FilterDCA,":[90],"simpler":[92],"predictor":[94],"inter-domain":[96],"inter-protein":[98],"contacts.":[99],"It":[100],"is":[101,157],"based":[102],"on":[103],"fact":[105],"that":[106],"contact":[107,113],"maps":[108],"show":[111],"typical":[112],"patterns,":[114],"which":[115],"results":[116],"from":[117],"secondary":[118],"are":[121],"reflected":[122],"by":[123,138],"patterns":[124,133],"analysis.":[127],"We":[128],"explicitly":[129],"integrate":[130],"averaged":[131],"contacts":[132],"scores":[136],"derived":[137],"Direct":[139],"Coupling":[140],"Analysis,":[141],"improving":[142],"performance":[143],"over":[144],"standard":[145],"analysis,":[147],"while":[148],"remaining":[149],"fully":[150],"transparent":[151],"interpretable.":[153],"FilterDCA":[155],"code":[156],"available":[158],"at":[159],"http://gitlab.lcqb.upmc.fr/muscat/FilterDCA.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}