{"id":"https://openalex.org/W3008374236","doi":"https://doi.org/10.1371/journal.pcbi.1007385","title":"Graph-based description of tertiary lymphoid organs at single-cell level","display_name":"Graph-based description of tertiary lymphoid organs at single-cell level","publication_year":2020,"publication_date":"2020-02-21","ids":{"openalex":"https://openalex.org/W3008374236","doi":"https://doi.org/10.1371/journal.pcbi.1007385","mag":"3008374236","pmid":"https://pubmed.ncbi.nlm.nih.gov/32084130"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007385","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007385","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007385&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007385&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035773481","display_name":"Nadine S. Schaadt","orcid":"https://orcid.org/0000-0001-7685-8087"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Nadine S. Schaadt","raw_affiliation_strings":["Institute for Pathology, Hannover Medical School, Hannover, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7685-8087","affiliations":[{"raw_affiliation_string":"Institute for Pathology, Hannover Medical School, Hannover, Germany","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089850603","display_name":"Ralf Sch\u00f6nmeyer","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Ralf Sch\u00f6nmeyer","raw_affiliation_strings":["Definiens AG, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Definiens AG, Munich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030958578","display_name":"Germain Forestier","orcid":"https://orcid.org/0000-0002-4960-7554"},"institutions":[{"id":"https://openalex.org/I2800745255","display_name":"Universit\u00e9 de Haute-Alsace","ror":"https://ror.org/04k8k6n84","country_code":"FR","type":"education","lineage":["https://openalex.org/I2800745255"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Germain Forestier","raw_affiliation_strings":["IRIMAS, University of Haute Alsace, Mulhouse, France"],"raw_orcid":"https://orcid.org/0000-0002-4960-7554","affiliations":[{"raw_affiliation_string":"IRIMAS, University of Haute Alsace, Mulhouse, France","institution_ids":["https://openalex.org/I2800745255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019149764","display_name":"Nicolas Brieu","orcid":"https://orcid.org/0000-0001-8791-8022"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Nicolas Brieu","raw_affiliation_strings":["Definiens AG, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Definiens AG, Munich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015246499","display_name":"Peter Braubach","orcid":"https://orcid.org/0000-0003-3673-7779"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Peter Braubach","raw_affiliation_strings":["Institute for Pathology, Hannover Medical School, Hannover, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3673-7779","affiliations":[{"raw_affiliation_string":"Institute for Pathology, Hannover Medical School, Hannover, Germany","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074371206","display_name":"Katharina Nekolla","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Katharina Nekolla","raw_affiliation_strings":["Definiens AG, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Definiens AG, Munich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024162635","display_name":"Michael Meyer\u2010Hermann","orcid":"https://orcid.org/0000-0002-4300-2474"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Meyer-Hermann","raw_affiliation_strings":["Institute for Biochemistry, Biotechnology and Bioinformatics, TU Braunschweig, Braunschweig, Germany","Systems Immunology and Integrated Centre of Systems Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany"],"raw_orcid":"https://orcid.org/0000-0002-4300-2474","affiliations":[{"raw_affiliation_string":"Institute for Biochemistry, Biotechnology and Bioinformatics, TU Braunschweig, Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Systems Immunology and Integrated Centre of Systems Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057185329","display_name":"Friedrich Feuerhake","orcid":"https://orcid.org/0000-0002-1234-982X"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Friedrich Feuerhake","raw_affiliation_strings":["Institute for Neuropathology, University Clinic Freiburg, Freiburg, Germany","Institute for Pathology, Hannover Medical School, Hannover, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1234-982X","affiliations":[{"raw_affiliation_string":"Institute for Neuropathology, University Clinic Freiburg, Freiburg, Germany","institution_ids":[]},{"raw_affiliation_string":"Institute for Pathology, Hannover Medical School, Hannover, Germany","institution_ids":["https://openalex.org/I34809795"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5015246499","https://openalex.org/A5019149764","https://openalex.org/A5024162635","https://openalex.org/A5030958578","https://openalex.org/A5035773481","https://openalex.org/A5057185329","https://openalex.org/A5074371206","https://openalex.org/A5089850603"],"corresponding_institution_ids":["https://openalex.org/I2800745255","https://openalex.org/I34809795","https://openalex.org/I4210124929","https://openalex.org/I94509681"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.5852,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.64392978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"16","issue":"2","first_page":"e1007385","last_page":"e1007385"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13410","display_name":"Immune responses and vaccinations","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/delaunay-triangulation","display_name":"Delaunay triangulation","score":0.6788870692253113},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4787980020046234},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.450337678194046},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.41832417249679565},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.415653795003891},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.4119381606578827},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3571093678474426},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3569173812866211},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3503786325454712},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3469664454460144},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.22623211145401},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2220543622970581}],"concepts":[{"id":"https://openalex.org/C68010082","wikidata":"https://www.wikidata.org/wiki/Q192445","display_name":"Delaunay triangulation","level":2,"score":0.6788870692253113},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4787980020046234},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.450337678194046},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.41832417249679565},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.415653795003891},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4119381606578827},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3571093678474426},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3569173812866211},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3503786325454712},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3469664454460144},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.22623211145401},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2220543622970581},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1007385","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007385","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007385&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32084130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32084130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-02633072v1","is_oa":true,"landing_page_url":"https://hal.science/hal-02633072","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2020, 16 (2), pp.e1007385. &#x27E8;10.1371/journal.pcbi.1007385&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:f3da8b72c7e947d9b0fbceaeeebb7623","is_oa":true,"landing_page_url":"https://doaj.org/article/f3da8b72c7e947d9b0fbceaeeebb7623","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 2, p e1007385 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/11886057","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Graph-based_description_of_tertiary_lymphoid_organs_at_single-cell_level/11886057","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:7055921","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7055921","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:repository.helmholtz-hzi.de:10033/622191","is_oa":true,"landing_page_url":"http://hdl.handle.net/10033/622191","pdf_url":null,"source":{"id":"https://openalex.org/S7407055272","display_name":"Helmholtz Zentrum f\u00fcr Infektionsforschung Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology","raw_type":"Article"},{"id":"pmh:oai:univoak.eu:islandora_95193","is_oa":true,"landing_page_url":"https://dx.plos.org/10.1371/journal.pcbi.1007385","pdf_url":null,"source":{"id":"https://openalex.org/S4306402449","display_name":"univOAK (4 institutions : Universit\u00e9 de Strasbourg, Universit\u00e9 de Haute Alsace, INSA Strasbourg, Biblioth\u00e8que Nationale et Universitaire de Strasbourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210100283","host_organization_name":"Laboratoire des Sciences de l'Ing\u00e9nieur, de l'Informatique et de l'Imagerie","host_organization_lineage":["https://openalex.org/I4210100283"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007385","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007385","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007385&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.800000011920929}],"awards":[{"id":"https://openalex.org/G1360746087","display_name":null,"funder_award_id":"FKZ01ZX1608B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2028778620","display_name":null,"funder_award_id":"FKZ01ZX1608A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G510836833","display_name":null,"funder_award_id":"FKZ01ZX1608C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323326","display_name":"Medizinischen Hochschule Hannover","ror":"https://ror.org/00f2yqf98"},{"id":"https://openalex.org/F4320325535","display_name":"Gesellschaft der Freunde der Medizinischen Hochschule Hannover","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3008374236.pdf","grobid_xml":"https://content.openalex.org/works/W3008374236.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1664117961","https://openalex.org/W1974986363","https://openalex.org/W1977077086","https://openalex.org/W1978609778","https://openalex.org/W1982877988","https://openalex.org/W1992649110","https://openalex.org/W2002029424","https://openalex.org/W2008997808","https://openalex.org/W2015989676","https://openalex.org/W2028053538","https://openalex.org/W2030846337","https://openalex.org/W2046560134","https://openalex.org/W2053314099","https://openalex.org/W2056556444","https://openalex.org/W2065734531","https://openalex.org/W2071380288","https://openalex.org/W2075786893","https://openalex.org/W2084338775","https://openalex.org/W2097591929","https://openalex.org/W2102122455","https://openalex.org/W2112028161","https://openalex.org/W2112990461","https://openalex.org/W2114808709","https://openalex.org/W2119884413","https://openalex.org/W2120121156","https://openalex.org/W2120431466","https://openalex.org/W2122278532","https://openalex.org/W2122874647","https://openalex.org/W2126563020","https://openalex.org/W2151049171","https://openalex.org/W2158260035","https://openalex.org/W2161634498","https://openalex.org/W2163480486","https://openalex.org/W2196971020","https://openalex.org/W2260996817","https://openalex.org/W2312123827","https://openalex.org/W2339442385","https://openalex.org/W2378154190","https://openalex.org/W2488056629","https://openalex.org/W2533800772","https://openalex.org/W2552263672","https://openalex.org/W2610104647","https://openalex.org/W2611439288","https://openalex.org/W2649199521","https://openalex.org/W2767085287","https://openalex.org/W2809779915","https://openalex.org/W2810819381","https://openalex.org/W2888914413","https://openalex.org/W2899901712","https://openalex.org/W2902855764","https://openalex.org/W2904507351","https://openalex.org/W2907492528","https://openalex.org/W2923177801","https://openalex.org/W2946697841","https://openalex.org/W2963946985","https://openalex.org/W4210257598","https://openalex.org/W4246504300","https://openalex.org/W4251633039","https://openalex.org/W6657597522"],"related_works":["https://openalex.org/W2359979928","https://openalex.org/W2368353614","https://openalex.org/W2390369954","https://openalex.org/W1529719486","https://openalex.org/W2373917503","https://openalex.org/W1883162576","https://openalex.org/W2906423005","https://openalex.org/W4232052003","https://openalex.org/W2385297469","https://openalex.org/W2001914902"],"abstract_inverted_index":{"Our":[0,170],"aim":[1],"is":[2,28],"to":[3,73,140,163,186],"complement":[4],"observer-dependent":[5],"approaches":[6],"of":[7,20,26,48,79,97,107,119,130,132,136,143,154,189],"immune":[8,168],"cell":[9,58,127],"evaluation":[10],"in":[11,37,51,61,104,111,116,160],"microscopy":[12],"images":[13],"with":[14,156],"reproducible":[15],"measures":[16],"for":[17,32,35,85],"spatial":[18],"composition":[19,78],"lymphocytic":[21,137],"infiltrates.":[22,169],"Analyzing":[23],"such":[24],"patterns":[25],"inflammation":[27],"becoming":[29],"increasingly":[30],"important":[31],"therapeutic":[33],"decisions,":[34],"example":[36],"transplantation":[38],"medicine":[39],"or":[40],"cancer":[41,113],"immunology.":[42],"We":[43,93,145],"developed":[44],"a":[45,65,89,147,157,173,178],"graph-based":[46],"assessment":[47,124],"lymphocyte":[49],"clustering":[50],"full":[52,63],"whole":[53],"slide":[54],"images.":[55],"Based":[56],"on":[57,100],"coordinates":[59],"detected":[60],"the":[62,95,152,161,187],"image,":[64],"Delaunay":[66],"triangulation":[67],"and":[68,81,115,134,176],"distance":[69],"criteria":[70],"are":[71,83],"used":[72,84],"build":[74],"neighborhood":[75,148],"graphs.":[76],"The":[77,123],"nodes":[80],"edges":[82,155],"classification,":[86],"e.g.":[87],"using":[88],"support":[90],"vector":[91],"machine.":[92],"describe":[94],"variability":[96],"these":[98],"infiltrates":[99],"CD3/CD20":[101],"duplex":[102],"staining":[103],"renal":[105],"biopsies":[106],"long-term":[108],"functioning":[109],"allografts,":[110],"breast":[112],"cases,":[114],"lung":[117],"tissue":[118],"cystic":[120],"fibrosis":[121],"patients.":[122],"includes":[125],"automated":[126],"detection,":[128],"identification":[129],"regions":[131],"interest,":[133],"classification":[135],"clusters":[138],"according":[139],"their":[141],"degree":[142],"organization.":[144],"propose":[146],"feature":[149],"which":[150],"considers":[151],"occurrence":[153],"certain":[158],"type":[159],"graph":[162],"distinguish":[164],"between":[165],"phenotypically":[166],"different":[167,190],"work":[171],"addresses":[172],"medical":[174],"need":[175],"provides":[177],"scalable":[179],"framework":[180],"that":[181],"can":[182],"be":[183],"easily":[184],"adjusted":[185],"requirements":[188],"research":[191],"questions.":[192]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
