{"id":"https://openalex.org/W3007609047","doi":"https://doi.org/10.1371/journal.pcbi.1007287","title":"DeepHiC: A generative adversarial network for enhancing Hi-C data resolution","display_name":"DeepHiC: A generative adversarial network for enhancing Hi-C data resolution","publication_year":2020,"publication_date":"2020-02-21","ids":{"openalex":"https://openalex.org/W3007609047","doi":"https://doi.org/10.1371/journal.pcbi.1007287","mag":"3007609047","pmid":"https://pubmed.ncbi.nlm.nih.gov/32084131"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007287","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007287","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1007287","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100742823","display_name":"Hao Hong","orcid":"https://orcid.org/0000-0003-1653-4026"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Hong","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-1653-4026","affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041686947","display_name":"Shuai Jiang","orcid":"https://orcid.org/0000-0002-9737-9744"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Jiang","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-9737-9744","affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100348508","display_name":"Hao Li","orcid":"https://orcid.org/0000-0001-8495-8467"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Li","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109450249","display_name":"Guifang Du","orcid":null},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guifang Du","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039592616","display_name":"Yu Sun","orcid":"https://orcid.org/0000-0001-9182-0247"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Sun","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0001-9182-0247","affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102875227","display_name":"Huan Tao","orcid":"https://orcid.org/0000-0001-6279-9688"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Tao","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0001-6279-9688","affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035358019","display_name":"Cheng Quan","orcid":"https://orcid.org/0000-0003-1859-9683"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Quan","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-1859-9683","affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033018631","display_name":"Chenghui Zhao","orcid":"https://orcid.org/0000-0003-2059-630X"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenghui Zhao","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101449014","display_name":"Ruijiang Li","orcid":"https://orcid.org/0000-0003-3521-8926"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruijiang Li","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029943768","display_name":"Wanying Li","orcid":"https://orcid.org/0000-0001-9113-8694"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanying Li","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072518075","display_name":"Xiaoyao Yin","orcid":"https://orcid.org/0000-0002-8207-2512"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyao Yin","raw_affiliation_strings":["College of Computer, National University of Defence Technology, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-8207-2512","affiliations":[{"raw_affiliation_string":"College of Computer, National University of Defence Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087226542","display_name":"Yangchen Huang","orcid":"https://orcid.org/0000-0002-2273-3649"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangchen Huang","raw_affiliation_strings":["College of Computer, National University of Defence Technology, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer, National University of Defence Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106084673","display_name":"Cheng Li","orcid":"https://orcid.org/0000-0002-8123-2190"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210160507","display_name":"Center for Life Sciences","ror":"https://ror.org/05kje8j93","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570","https://openalex.org/I4210160507","https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Cheng Li","raw_affiliation_strings":["Center for Statistical Science, Center for Bioinformatics, Peking University, Beijing, China","Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies; School of Life Sciences, Peking University, Bejing, China","Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies","School of Life Sciences, Peking University, Bejing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Statistical Science, Center for Bioinformatics, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies; School of Life Sciences, Peking University, Bejing, China","institution_ids":["https://openalex.org/I4210160507"]},{"raw_affiliation_string":"Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies","institution_ids":["https://openalex.org/I4210160507"]},{"raw_affiliation_string":"School of Life Sciences, Peking University, Bejing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057117181","display_name":"Hebing Chen","orcid":"https://orcid.org/0000-0003-4102-356X"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hebing Chen","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-4102-356X","affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045958734","display_name":"Xiaochen Bo","orcid":"https://orcid.org/0000-0003-1911-7922"},"institutions":[{"id":"https://openalex.org/I4210132047","display_name":"Beijing Radiation Center","ror":"https://ror.org/030t7nd77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210132047"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaochen Bo","raw_affiliation_strings":["Beijing Institute of Radiation Medicine, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Radiation Medicine, Beijing, China","institution_ids":["https://openalex.org/I4210132047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5045958734","https://openalex.org/A5057117181","https://openalex.org/A5106084673"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210132047","https://openalex.org/I4210160507"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.8344,"has_fulltext":false,"cited_by_count":104,"citation_normalized_percentile":{"value":0.96217283,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"16","issue":"2","first_page":"e1007287","last_page":"e1007287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7640945911407471},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7143880128860474},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5388625860214233},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.5033833384513855},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.4871480166912079},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47265541553497314},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45590656995773315},{"id":"https://openalex.org/keywords/generative-adversarial-network","display_name":"Generative adversarial network","score":0.45212602615356445},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43998491764068604},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.43074357509613037},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.42797213792800903},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.355751097202301},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.34483373165130615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13856741786003113},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08026769757270813}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7640945911407471},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7143880128860474},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5388625860214233},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.5033833384513855},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.4871480166912079},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47265541553497314},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45590656995773315},{"id":"https://openalex.org/C2988773926","wikidata":"https://www.wikidata.org/wiki/Q25104379","display_name":"Generative adversarial network","level":3,"score":0.45212602615356445},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43998491764068604},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.43074357509613037},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.42797213792800903},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.355751097202301},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.34483373165130615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13856741786003113},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08026769757270813},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007287","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007287","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32084131","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32084131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:5a6c91d1af45465f9fa2858ebdb0b8a0","is_oa":true,"landing_page_url":"https://doaj.org/article/5a6c91d1af45465f9fa2858ebdb0b8a0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 2, p e1007287 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/11885982","is_oa":true,"landing_page_url":"https://figshare.com/articles/DeepHiC_A_Generative_Adversarial_Network_for_Enhancing_Hi-C_Data_Resolution/11885982","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:7055922","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7055922","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007287","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007287","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1788422544","display_name":null,"funder_award_id":"31801112","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391715649","display_name":null,"funder_award_id":"U1435222","funder_id":"https://openalex.org/F4320335577","funder_display_name":"Major Research Plan"},{"id":"https://openalex.org/G6379460485","display_name":null,"funder_award_id":"61873276","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7706836499","display_name":null,"funder_award_id":"Z191100001119064","funder_id":"https://openalex.org/F4320334978","funder_display_name":"Beijing Nova Program"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334978","display_name":"Beijing Nova Program","ror":"https://ror.org/034k14f91"},{"id":"https://openalex.org/F4320335577","display_name":"Major Research Plan","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":71,"referenced_works":["https://openalex.org/W54257720","https://openalex.org/W1522301498","https://openalex.org/W1605145036","https://openalex.org/W1686810756","https://openalex.org/W1836465849","https://openalex.org/W1862913282","https://openalex.org/W1924619199","https://openalex.org/W1973062929","https://openalex.org/W2002399114","https://openalex.org/W2014677321","https://openalex.org/W2018658338","https://openalex.org/W2060131032","https://openalex.org/W2065006553","https://openalex.org/W2070021921","https://openalex.org/W2080477348","https://openalex.org/W2090037139","https://openalex.org/W2098049350","https://openalex.org/W2099471712","https://openalex.org/W2102368172","https://openalex.org/W2102619694","https://openalex.org/W2109949710","https://openalex.org/W2114083195","https://openalex.org/W2125389028","https://openalex.org/W2133665775","https://openalex.org/W2142270559","https://openalex.org/W2145174846","https://openalex.org/W2145561180","https://openalex.org/W2161212572","https://openalex.org/W2163412235","https://openalex.org/W2190008860","https://openalex.org/W2194775991","https://openalex.org/W2253400648","https://openalex.org/W2323056845","https://openalex.org/W2331128040","https://openalex.org/W2481029670","https://openalex.org/W2507209892","https://openalex.org/W2562637781","https://openalex.org/W2625231465","https://openalex.org/W2735035409","https://openalex.org/W2738924259","https://openalex.org/W2765833400","https://openalex.org/W2767286248","https://openalex.org/W2774733631","https://openalex.org/W2795735651","https://openalex.org/W2800216985","https://openalex.org/W2803256172","https://openalex.org/W2898577086","https://openalex.org/W2899771611","https://openalex.org/W2901692632","https://openalex.org/W2919115771","https://openalex.org/W2936970738","https://openalex.org/W2949117887","https://openalex.org/W2949514938","https://openalex.org/W2952139859","https://openalex.org/W2962742960","https://openalex.org/W2962879692","https://openalex.org/W2963125871","https://openalex.org/W2963470893","https://openalex.org/W2963920537","https://openalex.org/W2964121744","https://openalex.org/W3037567775","https://openalex.org/W4295521014","https://openalex.org/W4297683907","https://openalex.org/W4297772798","https://openalex.org/W4320930577","https://openalex.org/W6691187937","https://openalex.org/W6735913928","https://openalex.org/W6745378982","https://openalex.org/W6746023985","https://openalex.org/W6756040250","https://openalex.org/W6779669310"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W2888032422","https://openalex.org/W2996316059","https://openalex.org/W4377980832","https://openalex.org/W2897769091","https://openalex.org/W2845413374","https://openalex.org/W3005996785","https://openalex.org/W4297411772","https://openalex.org/W4235873501"],"abstract_inverted_index":{"Hi-C":[0,23,47,63,87,112,137],"is":[1,25,58],"commonly":[2],"used":[3],"to":[4,11,44,83,111,133],"study":[5],"three-dimensional":[6],"genome":[7],"organization.":[8],"However,":[9],"due":[10],"the":[12,19,100],"high":[13],"sequencing":[14,52],"cost":[15],"and":[16,33,95,98],"technical":[17],"constraints,":[18],"resolution":[20],"of":[21,31,60,105,109],"most":[22],"datasets":[24],"coarse,":[26],"resulting":[27],"in":[28,85,91,103],"a":[29,40,125,141],"loss":[30],"information":[32],"biological":[34],"interpretability.":[35],"Here":[36],"we":[37],"develop":[38,124],"DeepHiC,":[39],"generative":[41],"adversarial":[42,74],"network,":[43],"predict":[45],"high-resolution":[46,62,86],"contact":[48],"maps":[49],"from":[50,65],"low-coverage":[51],"data.":[53],"We":[54,123],"demonstrated":[55],"that":[56,130],"DeepHiC":[57,110],"capable":[59],"reproducing":[61],"data":[64,113,138],"as":[66,68],"few":[67,142],"1%":[69],"downsampled":[70],"reads.":[71],"Empowered":[72],"by":[73],"training,":[75],"our":[76],"method":[77],"can":[78,118],"restore":[79],"fine-grained":[80],"details":[81],"similar":[82],"those":[84],"matrices,":[88],"boosting":[89],"accuracy":[90,104],"chromatin":[92,120],"loops":[93],"identification":[94],"TADs":[96],"detection,":[97],"outperforms":[99],"state-of-the-art":[101],"methods":[102],"prediction.":[106],"Finally,":[107],"application":[108],"on":[114],"mouse":[115],"embryonic":[116],"development":[117],"facilitate":[119],"loop":[121],"detection.":[122],"web-based":[126],"tool":[127],"(DeepHiC,":[128],"http://sysomics.com/deephic)":[129],"allows":[131],"researchers":[132],"enhance":[134],"their":[135],"own":[136],"with":[139],"just":[140],"clicks.":[143]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":9}],"updated_date":"2026-05-23T08:51:43.019350","created_date":"2025-10-10T00:00:00"}
