{"id":"https://openalex.org/W2953025047","doi":"https://doi.org/10.1371/journal.pcbi.1007128","title":"Open collaborative writing with Manubot","display_name":"Open collaborative writing with Manubot","publication_year":2019,"publication_date":"2019-06-24","ids":{"openalex":"https://openalex.org/W2953025047","doi":"https://doi.org/10.1371/journal.pcbi.1007128","mag":"2953025047","pmid":"https://pubmed.ncbi.nlm.nih.gov/31233491"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007128","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007128","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007128&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007128&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043439179","display_name":"Daniel Himmelstein","orcid":"https://orcid.org/0000-0002-3012-7446"},"institutions":[{"id":"https://openalex.org/I4210125521","display_name":"Translational Therapeutics (United States)","ror":"https://ror.org/02z3rcy16","country_code":"US","type":"company","lineage":["https://openalex.org/I4210125521"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel S. Himmelstein","raw_affiliation_strings":["Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-3012-7446","affiliations":[{"raw_affiliation_string":"Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210125521","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082140316","display_name":"Vincent Rubinetti","orcid":"https://orcid.org/0000-0002-4655-3773"},"institutions":[{"id":"https://openalex.org/I4210125521","display_name":"Translational Therapeutics (United States)","ror":"https://ror.org/02z3rcy16","country_code":"US","type":"company","lineage":["https://openalex.org/I4210125521"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Rubinetti","raw_affiliation_strings":["Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4655-3773","affiliations":[{"raw_affiliation_string":"Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210125521","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090325434","display_name":"David R. Slochower","orcid":"https://orcid.org/0000-0003-3928-5050"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David R. Slochower","raw_affiliation_strings":["Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San Diego, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3928-5050","affiliations":[{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033958751","display_name":"Dongbo Hu","orcid":"https://orcid.org/0000-0001-7870-8242"},"institutions":[{"id":"https://openalex.org/I4210125521","display_name":"Translational Therapeutics (United States)","ror":"https://ror.org/02z3rcy16","country_code":"US","type":"company","lineage":["https://openalex.org/I4210125521"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongbo Hu","raw_affiliation_strings":["Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210125521","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013449579","display_name":"Venkat S. Malladi","orcid":"https://orcid.org/0000-0002-0144-0564"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Venkat S. Malladi","raw_affiliation_strings":["Bioinformatics Core Facility, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America","Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-0144-0564","affiliations":[{"raw_affiliation_string":"Bioinformatics Core Facility, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050692257","display_name":"Casey S. Greene","orcid":"https://orcid.org/0000-0001-8713-9213"},"institutions":[{"id":"https://openalex.org/I4210125521","display_name":"Translational Therapeutics (United States)","ror":"https://ror.org/02z3rcy16","country_code":"US","type":"company","lineage":["https://openalex.org/I4210125521"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Casey S. Greene","raw_affiliation_strings":["Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-8713-9213","affiliations":[{"raw_affiliation_string":"Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210125521","https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083286341","display_name":"Anthony Gitter","orcid":"https://orcid.org/0000-0002-5324-9833"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anthony Gitter","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Morgridge Institute for Research, Madison, Wisconsin, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5324-9833","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I29680605"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5043439179","https://openalex.org/A5083286341"],"corresponding_institution_ids":["https://openalex.org/I135310074","https://openalex.org/I29680605","https://openalex.org/I4210125521","https://openalex.org/I79576946"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":21.2788,"has_fulltext":true,"cited_by_count":83,"citation_normalized_percentile":{"value":0.99334556,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"15","issue":"6","first_page":"e1007128","last_page":"e1007128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9707000255584717,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.777970552444458},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.7625744342803955},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.695324718952179},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6892780065536499},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6205528974533081},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.527559220790863},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4589690864086151},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4495764672756195},{"id":"https://openalex.org/keywords/scholarly-communication","display_name":"Scholarly communication","score":0.4345100522041321},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.4319768249988556},{"id":"https://openalex.org/keywords/publishing","display_name":"Publishing","score":0.427822470664978},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4195745587348938},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3715451657772064},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33280321955680847},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2481432855129242}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.777970552444458},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.7625744342803955},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.695324718952179},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6892780065536499},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6205528974533081},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.527559220790863},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4589690864086151},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4495764672756195},{"id":"https://openalex.org/C2777462167","wikidata":"https://www.wikidata.org/wiki/Q7432048","display_name":"Scholarly communication","level":3,"score":0.4345100522041321},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.4319768249988556},{"id":"https://openalex.org/C151719136","wikidata":"https://www.wikidata.org/wiki/Q3972943","display_name":"Publishing","level":2,"score":0.427822470664978},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4195745587348938},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3715451657772064},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33280321955680847},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2481432855129242},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008374","descriptor_name":"Manuscripts, Medical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008374","descriptor_name":"Manuscripts, Medical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008374","descriptor_name":"Manuscripts, Medical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008374","descriptor_name":"Manuscripts, Medical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1007128","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007128","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007128&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31233491","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31233491","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1007128","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007128","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:europepmc.org:5588581","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6611653","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:7207318b36604170a02a4e5cb35809bc","is_oa":true,"landing_page_url":"https://doaj.org/article/7207318b36604170a02a4e5cb35809bc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 6, p e1007128 (2019)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/8314499","is_oa":true,"landing_page_url":"https://figshare.com/articles/media/Open_collaborative_writing_with_Manubot/8314499","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007128","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007128","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007128&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G3884107769","display_name":null,"funder_award_id":"RP150596","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G7587494334","display_name":null,"funder_award_id":"G-2018-11163","funder_id":"https://openalex.org/F4320306151","funder_display_name":"Alfred P. Sloan Foundation"},{"id":"https://openalex.org/G7614424270","display_name":null,"funder_award_id":"GBMF4552","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"}],"funders":[{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953025047.pdf","grobid_xml":"https://content.openalex.org/works/W2953025047.grobid-xml"},"referenced_works_count":103,"referenced_works":["https://openalex.org/W1509330307","https://openalex.org/W1694905212","https://openalex.org/W1924867093","https://openalex.org/W1964036498","https://openalex.org/W1969605785","https://openalex.org/W1995054497","https://openalex.org/W2009111228","https://openalex.org/W2012528814","https://openalex.org/W2017419154","https://openalex.org/W2056961938","https://openalex.org/W2062435519","https://openalex.org/W2076765281","https://openalex.org/W2077072541","https://openalex.org/W2097716833","https://openalex.org/W2098935244","https://openalex.org/W2111060111","https://openalex.org/W2114245587","https://openalex.org/W2140845110","https://openalex.org/W2142339122","https://openalex.org/W2144820649","https://openalex.org/W2149606817","https://openalex.org/W2150627814","https://openalex.org/W2210876327","https://openalex.org/W2270443308","https://openalex.org/W2322381034","https://openalex.org/W2428875570","https://openalex.org/W2463568293","https://openalex.org/W2502875887","https://openalex.org/W2516678343","https://openalex.org/W2560471521","https://openalex.org/W2562885672","https://openalex.org/W2583253711","https://openalex.org/W2597357676","https://openalex.org/W2600079720","https://openalex.org/W2611131651","https://openalex.org/W2618245351","https://openalex.org/W2731055327","https://openalex.org/W2734665458","https://openalex.org/W2737712680","https://openalex.org/W2737988770","https://openalex.org/W2758392106","https://openalex.org/W2761137603","https://openalex.org/W2784547979","https://openalex.org/W2785823074","https://openalex.org/W2789543201","https://openalex.org/W2791668242","https://openalex.org/W2792641098","https://openalex.org/W2793652984","https://openalex.org/W2807804516","https://openalex.org/W2807947897","https://openalex.org/W2886900553","https://openalex.org/W2897218130","https://openalex.org/W2900535746","https://openalex.org/W2901786064","https://openalex.org/W2909072363","https://openalex.org/W2914755773","https://openalex.org/W2916189061","https://openalex.org/W2917690073","https://openalex.org/W2923782484","https://openalex.org/W2945881863","https://openalex.org/W2947187332","https://openalex.org/W2947273205","https://openalex.org/W2949078164","https://openalex.org/W2949311246","https://openalex.org/W2949379258","https://openalex.org/W2950567230","https://openalex.org/W2951934944","https://openalex.org/W2955219525","https://openalex.org/W2963355979","https://openalex.org/W2997143876","https://openalex.org/W3007365321","https://openalex.org/W4232875366","https://openalex.org/W4237164438","https://openalex.org/W4238684574","https://openalex.org/W4244888246","https://openalex.org/W4245802241","https://openalex.org/W4246027123","https://openalex.org/W4248405279","https://openalex.org/W4249386210","https://openalex.org/W4250630720","https://openalex.org/W4253987190","https://openalex.org/W4298347264","https://openalex.org/W4394100022","https://openalex.org/W6630552351","https://openalex.org/W6649297343","https://openalex.org/W6681328291","https://openalex.org/W6688142103","https://openalex.org/W6717585575","https://openalex.org/W6718966756","https://openalex.org/W6724778133","https://openalex.org/W6726554034","https://openalex.org/W6744429343","https://openalex.org/W6749155112","https://openalex.org/W6752334969","https://openalex.org/W6759454543","https://openalex.org/W6760246924","https://openalex.org/W6806135199","https://openalex.org/W6813631522","https://openalex.org/W6816006015","https://openalex.org/W6864738730","https://openalex.org/W6892291099","https://openalex.org/W6921235873","https://openalex.org/W7073606533"],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2106424170","https://openalex.org/W1985426483","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2010935248","https://openalex.org/W2768810474"],"abstract_inverted_index":{"Open,":[0],"collaborative":[1,63],"research":[2,22],"is":[3,117,157],"a":[4,78,120,132,163],"powerful":[5],"paradigm":[6],"that":[7],"can":[8,98],"immensely":[9],"strengthen":[10],"the":[11,42,50,124,172],"scientific":[12],"process":[13],"by":[14,54,139,142,177],"integrating":[15],"broad":[16],"and":[17,23,75,101,129,160,185],"diverse":[18],"expertise.":[19],"However,":[20],"traditional":[21],"multi-author":[24],"writing":[25],"processes":[26],"break":[27],"down":[28],"at":[29,38],"scale.":[30],"We":[31],"present":[32],"new":[33],"software":[34,59],"named":[35],"Manubot,":[36,69],"available":[37],"https://manubot.org,":[39],"to":[40,61,81,111,131,162,169],"address":[41],"challenges":[43],"of":[44,65,174,187],"open":[45,57,175],"scholarly":[46,66],"writing.":[47],"Manubot":[48,116,135,166],"adopts":[49],"contribution":[51],"workflow":[52],"used":[53],"many":[55],"large-scale":[56],"source":[58,122],"projects":[60],"enable":[62],"authoring":[64],"manuscripts.":[67],"With":[68],"manuscripts":[70],"are":[71,127],"written":[72],"in":[73,77],"Markdown":[74],"stored":[76],"Git":[79],"repository":[80],"precisely":[82],"track":[83],"changes":[84,110],"over":[85],"time.":[86],"By":[87],"hosting":[88],"manuscript":[89],"repositories":[90],"publicly,":[91],"such":[92],"as":[93],"on":[94],"GitHub,":[95],"multiple":[96],"authors":[97],"simultaneously":[99],"propose":[100],"review":[102],"changes.":[103],"A":[104],"cloud":[105],"service":[106],"automatically":[107],"evaluates":[108],"proposed":[109],"catch":[112],"errors.":[113],"Publication":[114],"with":[115,171],"continuous:":[118],"When":[119],"manuscript's":[121],"changes,":[123],"rendered":[125],"outputs":[126],"rebuilt":[128],"republished":[130],"web":[133],"page.":[134],"automates":[136],"bibliographic":[137],"tasks":[138],"implementing":[140],"citation":[141],"identifier,":[143],"where":[144],"users":[145],"cite":[146],"persistent":[147],"identifiers":[148],"(e.g.":[149],"DOIs,":[150],"PubMed":[151],"IDs,":[152],"ISBNs,":[153],"URLs),":[154],"whose":[155],"metadata":[156],"then":[158],"retrieved":[159],"converted":[161],"user-specified":[164],"style.":[165],"modernizes":[167],"publishing":[168],"align":[170],"ideals":[173],"science":[176],"making":[178],"it":[179],"transparent,":[180],"reproducible,":[181],"immediate,":[182],"versioned,":[183],"collaborative,":[184],"free":[186],"charge.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
