{"id":"https://openalex.org/W2948069650","doi":"https://doi.org/10.1371/journal.pcbi.1007056","title":"The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes","display_name":"The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes","publication_year":2019,"publication_date":"2019-06-06","ids":{"openalex":"https://openalex.org/W2948069650","doi":"https://doi.org/10.1371/journal.pcbi.1007056","mag":"2948069650","pmid":"https://pubmed.ncbi.nlm.nih.gov/31170145"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007056","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007056","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1007056","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090782451","display_name":"Hongjun Bai","orcid":"https://orcid.org/0000-0002-3501-3974"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongjun Bai","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-3501-3974","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100427016","display_name":"Yifan Li","orcid":"https://orcid.org/0000-0001-7038-2671"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifan Li","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036265394","display_name":"Nelson L. Michael","orcid":"https://orcid.org/0000-0001-5882-5548"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nelson L. Michael","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076820552","display_name":"Merlin L. Robb","orcid":"https://orcid.org/0000-0003-3949-9649"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Merlin L. Robb","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3949-9649","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America","institution_ids":["https://openalex.org/I92664306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067755958","display_name":"Morgane Rolland","orcid":"https://orcid.org/0000-0003-3650-8490"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I92664306","display_name":"Walter Reed Army Institute of Research","ror":"https://ror.org/0145znz58","country_code":"US","type":"government","lineage":["https://openalex.org/I106965489","https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I2802581893","https://openalex.org/I92664306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Morgane Rolland","raw_affiliation_strings":["Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3650-8490","affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America","institution_ids":["https://openalex.org/I1280259254"]},{"raw_affiliation_string":"U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America","institution_ids":["https://openalex.org/I92664306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067755958"],"corresponding_institution_ids":["https://openalex.org/I1280259254","https://openalex.org/I92664306"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.4808,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.89974565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"15","issue":"6","first_page":"e1007056","last_page":"e1007056"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9302124381065369},{"id":"https://openalex.org/keywords/neutralization","display_name":"Neutralization","score":0.7702680826187134},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.665502667427063},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6323109865188599},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5430315732955933},{"id":"https://openalex.org/keywords/neutralizing-antibody","display_name":"Neutralizing antibody","score":0.48941317200660706},{"id":"https://openalex.org/keywords/hypervariable-region","display_name":"Hypervariable region","score":0.4450252056121826},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.41337448358535767},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.23470869660377502}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9302124381065369},{"id":"https://openalex.org/C14086860","wikidata":"https://www.wikidata.org/wiki/Q337120","display_name":"Neutralization","level":3,"score":0.7702680826187134},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.665502667427063},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6323109865188599},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5430315732955933},{"id":"https://openalex.org/C2779261636","wikidata":"https://www.wikidata.org/wiki/Q7003054","display_name":"Neutralizing antibody","level":3,"score":0.48941317200660706},{"id":"https://openalex.org/C81566733","wikidata":"https://www.wikidata.org/wiki/Q1047544","display_name":"Hypervariable region","level":3,"score":0.4450252056121826},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.41337448358535767},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.23470869660377502}],"mesh":[{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D015483","descriptor_name":"HIV Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016915","descriptor_name":"AIDS Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D054299","descriptor_name":"env Gene Products, Human Immunodeficiency Virus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007056","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007056","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31170145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31170145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:3519ac796fdb496f9dfde5dd9a04fc80","is_oa":true,"landing_page_url":"https://doaj.org/article/3519ac796fdb496f9dfde5dd9a04fc80","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 6, p e1007056 (2019)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/8236673","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/The_breadth_of_HIV-1_neutralizing_antibodies_depends_on_the_conservation_of_key_sites_in_their_epitopes/8236673","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:6581281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6581281","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007056","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007056","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6700000166893005,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W624853816","https://openalex.org/W1533750546","https://openalex.org/W1673310716","https://openalex.org/W1974273518","https://openalex.org/W1978398372","https://openalex.org/W1980811933","https://openalex.org/W1991436594","https://openalex.org/W1995875735","https://openalex.org/W1997677784","https://openalex.org/W2001900040","https://openalex.org/W2004360551","https://openalex.org/W2011301426","https://openalex.org/W2048787904","https://openalex.org/W2089135598","https://openalex.org/W2093961711","https://openalex.org/W2097818324","https://openalex.org/W2114850508","https://openalex.org/W2128846527","https://openalex.org/W2130479394","https://openalex.org/W2135151522","https://openalex.org/W2137939749","https://openalex.org/W2143210482","https://openalex.org/W2143585030","https://openalex.org/W2153504150","https://openalex.org/W2160378127","https://openalex.org/W2160544821","https://openalex.org/W2168172687","https://openalex.org/W2170711116","https://openalex.org/W2170964688","https://openalex.org/W2181523240","https://openalex.org/W2235599671","https://openalex.org/W2336507460","https://openalex.org/W2381153372","https://openalex.org/W2472803348","https://openalex.org/W2510475640","https://openalex.org/W2526682386","https://openalex.org/W2570553572","https://openalex.org/W2588098817","https://openalex.org/W2595849159","https://openalex.org/W2607794913","https://openalex.org/W2608032033","https://openalex.org/W2752141707","https://openalex.org/W2800173669","https://openalex.org/W2804113494","https://openalex.org/W2811354203","https://openalex.org/W2883968630","https://openalex.org/W3005347330","https://openalex.org/W3139821851","https://openalex.org/W4285719527","https://openalex.org/W6753870267","https://openalex.org/W6773842061","https://openalex.org/W6982728064"],"related_works":["https://openalex.org/W2143534564","https://openalex.org/W1977627421","https://openalex.org/W2324909388","https://openalex.org/W2075194672","https://openalex.org/W1979003966","https://openalex.org/W3133547117","https://openalex.org/W1545923077","https://openalex.org/W2309520848","https://openalex.org/W3110499570","https://openalex.org/W2093961711"],"abstract_inverted_index":{"Developing":[0],"HIV-1":[1],"vaccines":[2],"that":[3,55,105,153],"trigger":[4],"broadly":[5],"neutralizing":[6,31],"antibodies":[7],"(bnAbs)":[8],"is":[9],"a":[10,20,30,147],"priority":[11],"as":[12,62,64],"bnAbs":[13,108],"are":[14],"considered":[15],"key":[16,97,140],"to":[17,58],"elicitation":[18],"of":[19,29,38,130,139,142],"protective":[21],"immune":[22],"response.":[23],"To":[24],"investigate":[25],"whether":[26],"the":[27,36,100,106,127,137,143],"breadth":[28,84,122,152],"antibody":[32],"(nAb)":[33],"depended":[34,134],"on":[35,136],"conservation":[37,81,129,138],"its":[39],"epitope":[40,80],"among":[41],"circulating":[42],"viruses,":[43],"we":[44,103],"examined":[45],"Antibody:Envelope":[46],"(Ab:Env)":[47],"interactions":[48],"and":[49,82],"worldwide":[50],"Env":[51,68],"diversity.":[52],"We":[53],"found":[54],"sites":[56,69,98,141],"corresponding":[57],"bnAb":[59],"epitopes":[60,112,132],"were":[61],"variable":[63],"other":[65],"accessible,":[66],"non-hypervariable":[67],"(p":[70],"=":[71,87,91,115,119],"0.50,":[72],"Mann-Whitney":[73],"U-test)":[74],"with":[75],"no":[76],"significant":[77],"relationship":[78],"between":[79],"neutralization":[83,151],"(Spearman's":[85,113],"\u03c1":[86,114],"-0.44,":[88],"adjusted":[89,117],"p":[90,118],"0.079).":[92],"However,":[93],"when":[94],"accounting":[95],"for":[96,150,157],"in":[99],"Ab:Env":[101,144],"interaction,":[102,145],"showed":[104],"broadest":[107],"targeted":[109],"more":[110],"conserved":[111],"-0.70,":[116],"5.0e-5).":[120],"Neutralization":[121],"did":[123],"not":[124],"stem":[125],"from":[126],"overall":[128],"Ab":[131],"but":[133],"instead":[135],"revealing":[146],"mechanistic":[148],"basis":[149],"could":[154],"be":[155],"exploited":[156],"vaccine":[158],"design.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
