{"id":"https://openalex.org/W2946564000","doi":"https://doi.org/10.1371/journal.pcbi.1007037","title":"Detecting interaction networks in the human microbiome with conditional Granger causality","display_name":"Detecting interaction networks in the human microbiome with conditional Granger causality","publication_year":2019,"publication_date":"2019-05-20","ids":{"openalex":"https://openalex.org/W2946564000","doi":"https://doi.org/10.1371/journal.pcbi.1007037","mag":"2946564000","pmid":"https://pubmed.ncbi.nlm.nih.gov/31107866"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007037","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007037","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007037&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007037&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038457625","display_name":"Kumar P. Mainali","orcid":"https://orcid.org/0000-0001-7470-8173"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kumar Mainali","raw_affiliation_strings":["Department of Biology, University of Maryland, College Park, Maryland, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Maryland, College Park, Maryland, United States of America","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065107609","display_name":"Sharon Bewick","orcid":"https://orcid.org/0000-0002-2563-5761"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharon Bewick","raw_affiliation_strings":["Department of Biology, University of Maryland, College Park, Maryland, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Maryland, College Park, Maryland, United States of America","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008461314","display_name":"Briana Vecchio-Pag\u00e1n","orcid":null},"institutions":[{"id":"https://openalex.org/I2802946424","display_name":"Johns Hopkins University Applied Physics Laboratory","ror":"https://ror.org/029pp9z10","country_code":"US","type":"facility","lineage":["https://openalex.org/I145311948","https://openalex.org/I2802946424"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Briana Vecchio-Pagan","raw_affiliation_strings":["Research and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, United States of America"],"affiliations":[{"raw_affiliation_string":"Research and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, United States of America","institution_ids":["https://openalex.org/I2802946424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075311852","display_name":"David Karig","orcid":"https://orcid.org/0000-0002-9508-6411"},"institutions":[{"id":"https://openalex.org/I2802946424","display_name":"Johns Hopkins University Applied Physics Laboratory","ror":"https://ror.org/029pp9z10","country_code":"US","type":"facility","lineage":["https://openalex.org/I145311948","https://openalex.org/I2802946424"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Karig","raw_affiliation_strings":["Research and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, United States of America"],"affiliations":[{"raw_affiliation_string":"Research and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, United States of America","institution_ids":["https://openalex.org/I2802946424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052271280","display_name":"William F. Fagan","orcid":"https://orcid.org/0000-0003-2433-9052"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William F. Fagan","raw_affiliation_strings":["Department of Biology, University of Maryland, College Park, Maryland, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Maryland, College Park, Maryland, United States of America","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038457625"],"corresponding_institution_ids":["https://openalex.org/I66946132"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.0612,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.87498105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"5","first_page":"e1007037","last_page":"e1007037"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/intraspecific-competition","display_name":"Intraspecific competition","score":0.6747731566429138},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6715822219848633},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.6410024166107178},{"id":"https://openalex.org/keywords/interspecific-competition","display_name":"Interspecific competition","score":0.6227143406867981},{"id":"https://openalex.org/keywords/granger-causality","display_name":"Granger causality","score":0.5871291160583496},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.576569676399231},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.5727019906044006},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.515703022480011},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.48500797152519226},{"id":"https://openalex.org/keywords/causality","display_name":"Causality (physics)","score":0.4604871869087219},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.44483891129493713},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25520947575569153},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.21088135242462158},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10589870810508728},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10286340117454529}],"concepts":[{"id":"https://openalex.org/C131892835","wikidata":"https://www.wikidata.org/wiki/Q770985","display_name":"Intraspecific competition","level":2,"score":0.6747731566429138},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6715822219848633},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6410024166107178},{"id":"https://openalex.org/C63644423","wikidata":"https://www.wikidata.org/wiki/Q338562","display_name":"Interspecific competition","level":2,"score":0.6227143406867981},{"id":"https://openalex.org/C129824826","wikidata":"https://www.wikidata.org/wiki/Q2630107","display_name":"Granger causality","level":2,"score":0.5871291160583496},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.576569676399231},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.5727019906044006},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.515703022480011},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.48500797152519226},{"id":"https://openalex.org/C64357122","wikidata":"https://www.wikidata.org/wiki/Q1149766","display_name":"Causality (physics)","level":2,"score":0.4604871869087219},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.44483891129493713},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25520947575569153},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.21088135242462158},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10589870810508728},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10286340117454529},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006225","descriptor_name":"Hand","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006225","descriptor_name":"Hand","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006225","descriptor_name":"Hand","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014059","descriptor_name":"Tongue","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014059","descriptor_name":"Tongue","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014059","descriptor_name":"Tongue","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056265","descriptor_name":"Microbial Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007037","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007037","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007037&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31107866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31107866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:f4284177c5a841e1836a40f9bca4d3db","is_oa":true,"landing_page_url":"https://doaj.org/article/f4284177c5a841e1836a40f9bca4d3db","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 5, p e1007037 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5543012","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6544333","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/8155625","is_oa":true,"landing_page_url":"https://figshare.com/articles/Detecting_interaction_networks_in_the_human_microbiome_with_conditional_Granger_causality/8155625","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007037","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007037","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007037&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G3424441068","display_name":null,"funder_award_id":"W911NF-14-1","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G5172697189","display_name":null,"funder_award_id":"W911NF-14-1-049","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G5259331294","display_name":null,"funder_award_id":"W911NF","funder_id":"https://openalex.org/F4320338295","funder_display_name":"Army Research Laboratory"},{"id":"https://openalex.org/G5455089785","display_name":null,"funder_award_id":"#W911NF-14-1-0490","funder_id":"https://openalex.org/F4320338295","funder_display_name":"Army Research Laboratory"},{"id":"https://openalex.org/G6814794319","display_name":null,"funder_award_id":"#W911NF-14-1-0490","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G7452299184","display_name":null,"funder_award_id":"W911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G7801857249","display_name":null,"funder_award_id":"W911NF-14-1-0490","funder_id":"https://openalex.org/F4320338295","funder_display_name":"Army Research Laboratory"},{"id":"https://openalex.org/G8447962982","display_name":null,"funder_award_id":"W911NF-14-1-0490","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G8998121839","display_name":null,"funder_award_id":"911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"}],"funders":[{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"},{"id":"https://openalex.org/F4320338295","display_name":"Army Research Laboratory","ror":"https://ror.org/011hc8f90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2946564000.pdf","grobid_xml":"https://content.openalex.org/works/W2946564000.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W1483329458","https://openalex.org/W1484471192","https://openalex.org/W1539866179","https://openalex.org/W1581963595","https://openalex.org/W1627004820","https://openalex.org/W1864161604","https://openalex.org/W1926877338","https://openalex.org/W1933114814","https://openalex.org/W1971061059","https://openalex.org/W1990307469","https://openalex.org/W1998674591","https://openalex.org/W2004690636","https://openalex.org/W2020344920","https://openalex.org/W2021419056","https://openalex.org/W2022616740","https://openalex.org/W2024424774","https://openalex.org/W2027763661","https://openalex.org/W2032230795","https://openalex.org/W2038882326","https://openalex.org/W2044712133","https://openalex.org/W2046406067","https://openalex.org/W2049239673","https://openalex.org/W2056186894","https://openalex.org/W2059944622","https://openalex.org/W2069868094","https://openalex.org/W2074335138","https://openalex.org/W2083278075","https://openalex.org/W2085073796","https://openalex.org/W2092291770","https://openalex.org/W2094538556","https://openalex.org/W2101567517","https://openalex.org/W2101668146","https://openalex.org/W2102681753","https://openalex.org/W2112496485","https://openalex.org/W2112709449","https://openalex.org/W2113977541","https://openalex.org/W2115021853","https://openalex.org/W2116686857","https://openalex.org/W2117291237","https://openalex.org/W2122450421","https://openalex.org/W2124833887","https://openalex.org/W2125784987","https://openalex.org/W2125826054","https://openalex.org/W2126218947","https://openalex.org/W2128769815","https://openalex.org/W2132663737","https://openalex.org/W2133280087","https://openalex.org/W2135046866","https://openalex.org/W2137195441","https://openalex.org/W2140259111","https://openalex.org/W2149573313","https://openalex.org/W2151372451","https://openalex.org/W2152538010","https://openalex.org/W2162496068","https://openalex.org/W2178225550","https://openalex.org/W2252298505","https://openalex.org/W2321937847","https://openalex.org/W2326123813","https://openalex.org/W2347171910","https://openalex.org/W2492294785","https://openalex.org/W2516238566","https://openalex.org/W2583889943","https://openalex.org/W2589887861","https://openalex.org/W2593334737","https://openalex.org/W2768966482","https://openalex.org/W2795070909","https://openalex.org/W2952309330","https://openalex.org/W2962716677","https://openalex.org/W3000219431","https://openalex.org/W3146425672","https://openalex.org/W4233460278","https://openalex.org/W4241089564","https://openalex.org/W4244144009","https://openalex.org/W4291114417","https://openalex.org/W6678487634","https://openalex.org/W6700647953"],"related_works":["https://openalex.org/W2811105108","https://openalex.org/W2383353627","https://openalex.org/W2387296490","https://openalex.org/W2050341140","https://openalex.org/W2050795540","https://openalex.org/W2324738927","https://openalex.org/W2617574923","https://openalex.org/W2380808797","https://openalex.org/W2036353961","https://openalex.org/W2384700709"],"abstract_inverted_index":{"Human":[0],"microbiome":[1,94,109,250],"research":[2],"is":[3,34,65,126],"rife":[4],"with":[5,188],"studies":[6],"attempting":[7],"to":[8,39,46,110,163,219],"deduce":[9],"microbial":[10,52,120],"correlation":[11,17,47,57,115,125,141],"networks":[12,113],"from":[13,212],"sequencing":[14],"data.":[15],"Standard":[16],"and/or":[18],"network":[19],"analyses":[20],"may":[21,240],"be":[22,241],"misleading":[23],"when":[24],"taken":[25],"as":[26,58],"an":[27],"indication":[28],"of":[29,84,106,114,118,172,229],"taxon":[30],"interactions":[31,91,146,155,160,195,206],"because":[32],"\"correlation":[33],"neither":[35],"necessary":[36],"nor":[37],"sufficient":[38],"establish":[40],"causation\";":[41],"environmental":[42],"filtering":[43],"can":[44],"lead":[45],"between":[48,140,214,221],"non-interacting":[49],"taxa.":[50],"Unfortunately,":[51],"ecologists":[53],"have":[54],"generally":[55],"used":[56],"a":[59,66,72,99,128,136,166],"proxy":[60,130],"for":[61,89,131,244],"causality":[62,236],"although":[63],"there":[64],"general":[67],"consensus":[68],"about":[69,232],"what":[70],"constitutes":[71],"causal":[73,87,186],"relationship:":[74],"causes":[75],"both":[76],"precede":[77],"and":[78,116,142,190,217,237,252],"predict":[79],"effects.":[80],"We":[81,122,178],"apply":[82],"one":[83],"the":[85,107,112,173,215,222,227,246],"first":[86],"models":[88],"detecting":[90],"in":[92,185,226],"human":[93,108],"samples.":[95],"Specifically,":[96],"we":[97,134],"analyze":[98],"long":[100],"duration,":[101],"high":[102],"resolution":[103],"time":[104],"series":[105],"decipher":[111],"causation":[117],"human-associated":[119],"genera.":[121],"show":[123,191],"that":[124,192],"not":[127],"good":[129],"biological":[132],"interaction;":[133],"observed":[135],"weak":[137],"negative":[138],"relationship":[139],"causality.":[143],"Strong":[144],"interspecific":[145,194],"are":[147,156,183,196,207],"disproportionately":[148],"positive,":[149],"whereas":[150,203],"almost":[151],"all":[152],"strong":[153,193,204],"intraspecific":[154,159,205],"negative.":[157],"Interestingly,":[158],"also":[161],"appear":[162],"act":[164],"at":[165],"short":[167],"timescale":[168],"causing":[169],"vast":[170],"majority":[171],"effects":[174],"within":[175],"1-3":[176],"days.":[177],"report":[179],"how":[180],"different":[181],"taxa":[182],"involved":[184],"relationships":[187],"others,":[189],"rarely":[197],"conserved":[198],"across":[199],"two":[200,223],"body":[201],"sites":[202],"much":[208],"more":[209],"conserved,":[210],"ranging":[211],"33%":[213],"gut":[216],"right-hand":[218],"70%":[220],"hands.":[224],"Therefore,":[225],"absence":[228],"guiding":[230],"assumptions":[231],"ecological":[233],"interactions,":[234],"Granger":[235],"related":[238],"techniques":[239],"particularly":[242],"helpful":[243],"understanding":[245],"driving":[247],"factors":[248],"governing":[249],"composition":[251],"structure.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
