{"id":"https://openalex.org/W2964148489","doi":"https://doi.org/10.1371/journal.pcbi.1007007","title":"Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks","display_name":"Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks","publication_year":2019,"publication_date":"2019-07-25","ids":{"openalex":"https://openalex.org/W2964148489","doi":"https://doi.org/10.1371/journal.pcbi.1007007","mag":"2964148489","pmid":"https://pubmed.ncbi.nlm.nih.gov/31344036"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007007","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007007","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007007&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007007&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026668228","display_name":"Adam Rule","orcid":"https://orcid.org/0000-0003-2441-3320"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Rule","raw_affiliation_strings":["Design Lab, UC San Diego, La Jolla, California, United States of America","Design Lab, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Design Lab, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Design Lab, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061546513","display_name":"Amanda Birmingham","orcid":"https://orcid.org/0000-0002-4117-3317"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amanda Birmingham","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America","Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0002-4117-3317","affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084064381","display_name":"Cristal Z\u00fa\u00f1iga","orcid":"https://orcid.org/0000-0002-0135-7429"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cristal Zuniga","raw_affiliation_strings":["Department of Pediatrics, UC San Diego, La Jolla, California, United States of America","Department of Pediatrics, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0002-0135-7429","affiliations":[{"raw_affiliation_string":"Department of Pediatrics, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pediatrics, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028701796","display_name":"\u0130lkay Alt\u0131nta\u015f","orcid":"https://orcid.org/0000-0002-2196-0305"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilkay Altintas","raw_affiliation_strings":["Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0002-2196-0305","affiliations":[{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I181653535"]},{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022225777","display_name":"Shih-Cheng Huang","orcid":"https://orcid.org/0000-0001-9882-833X"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shih-Cheng Huang","raw_affiliation_strings":["Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","Current address: Biomedical Informatics Graduate Program, Stanford University, Stanford, CA, United States of America","Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0001-9882-833X","affiliations":[{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I181653535"]},{"raw_affiliation_string":"Current address: Biomedical Informatics Graduate Program, Stanford University, Stanford, CA, United States of America","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033881627","display_name":"Rob Knight","orcid":"https://orcid.org/0000-0002-0975-9019"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rob Knight","raw_affiliation_strings":["Department of Pediatrics, UC San Diego, La Jolla, California, United States of America","Departments of Bioengineering, and Computer Science and Engineering, and Center for Microbiome Innovation, UC San Diego, La Jolla, California, United States of America","Department of Pediatrics, UC San Diego, La Jolla, California, United States of America,","Departments of Bioengineering, and Computer Science and Engineering, and Center for Microbiome Innovation, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Departments of Bioengineering, and Computer Science and Engineering, and Center for Microbiome Innovation, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I4210133661"]},{"raw_affiliation_string":"Department of Pediatrics, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Departments of Bioengineering, and Computer Science and Engineering, and Center for Microbiome Innovation, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I4210133661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008998282","display_name":"Niema Moshiri","orcid":"https://orcid.org/0000-0003-2209-8128"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Niema Moshiri","raw_affiliation_strings":["Bioinformatics and Systems Biology Graduate Program, UC San Diego, La Jolla, California, United States of America","Bioinformatics and Systems Biology Graduate Program, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0003-2209-8128","affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Graduate Program, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Bioinformatics and Systems Biology Graduate Program, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102154730","display_name":"Mai H. Nguyen","orcid":"https://orcid.org/0000-0002-4945-1334"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mai H. Nguyen","raw_affiliation_strings":["Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I181653535"]},{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sara Brin Rosenthal","orcid":"https://orcid.org/0000-0002-6548-9658"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sara Brin Rosenthal","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America","Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0002-6548-9658","affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001962917","display_name":"Fernando P\u00e9rez","orcid":"https://orcid.org/0000-0002-1725-9815"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fernando P\u00e9rez","raw_affiliation_strings":["Department of Statistics and Berkeley Institute for Data Science, UC Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, California, United States of America","Berkeley Institute for Data Science, UC Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, California, United States of America","Department of Statistics and"],"raw_orcid":"https://orcid.org/0000-0002-1725-9815","affiliations":[{"raw_affiliation_string":"Department of Statistics and Berkeley Institute for Data Science, UC Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, California, United States of America","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Berkeley Institute for Data Science, UC Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, California, United States of America","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I95457486"]},{"raw_affiliation_string":"Department of Statistics and","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070583038","display_name":"Peter W. Rose","orcid":"https://orcid.org/0000-0001-9981-9750"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peter W. Rose","raw_affiliation_strings":["Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,"],"raw_orcid":"https://orcid.org/0000-0001-9981-9750","affiliations":[{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I181653535"]},{"raw_affiliation_string":"Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America,","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070583038"],"corresponding_institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":34.7673,"has_fulltext":true,"cited_by_count":191,"citation_normalized_percentile":{"value":0.99728944,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"15","issue":"7","first_page":"e1007007","last_page":"e1007007"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.7292200922966003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5527441501617432},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3371858596801758},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.09873524308204651},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.08794257044792175}],"concepts":[{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.7292200922966003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5527441501617432},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3371858596801758},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.09873524308204651},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.08794257044792175}],"mesh":[{"descriptor_ui":"D001319","descriptor_name":"Authorship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001319","descriptor_name":"Authorship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001319","descriptor_name":"Authorship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1007007","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007007","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007007&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31344036","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31344036","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1007007","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007007","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:b98a8f6a45f54150b160841152a7b406","is_oa":true,"landing_page_url":"https://doaj.org/article/b98a8f6a45f54150b160841152a7b406","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 7, p e1007007 (2019)","raw_type":"article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3hp3p179","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3hp3p179","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology, vol 15, iss 7","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6657818","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6657818","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007007","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007007","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007007&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2008985174","https://openalex.org/W2036318837","https://openalex.org/W2342082360","https://openalex.org/W2472803348","https://openalex.org/W2528766162","https://openalex.org/W2534699084","https://openalex.org/W2736977076","https://openalex.org/W2784241156","https://openalex.org/W2796040126","https://openalex.org/W2886900553","https://openalex.org/W2949379258","https://openalex.org/W2963508088","https://openalex.org/W4242395378"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2390279801","https://openalex.org/W2144385241","https://openalex.org/W2358668433","https://openalex.org/W4300101996","https://openalex.org/W2376932109","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Author(s):":[0],"Rule,":[1],"Adam;":[2],"Birmingham,":[3],"Amanda;":[4],"Zuniga,":[5],"Cristal;":[6],"Altintas,":[7],"Ilkay;":[8],"Huang,":[9],"Shih-Cheng;":[10],"Knight,":[11],"Rob;":[12],"Moshiri,":[13],"Niema;":[14],"Nguyen,":[15],"Mai":[16],"H;":[17],"Rosenthal,":[18],"Sara":[19],"Brin;":[20],"P\u00e9rez,":[21],"Fernando;":[22],"Rose,":[23],"Peter":[24],"W":[25],"|":[26],"Editor(s):":[27],"Lewitter,":[28],"Fran":[29]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":38},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
