{"id":"https://openalex.org/W2943166830","doi":"https://doi.org/10.1371/journal.pcbi.1006951","title":"I_MDS: an inflammatory bowel disease molecular activity score to classify patients with differing disease-driving pathways and therapeutic response to anti-TNF treatment","display_name":"I_MDS: an inflammatory bowel disease molecular activity score to classify patients with differing disease-driving pathways and therapeutic response to anti-TNF treatment","publication_year":2019,"publication_date":"2019-04-30","ids":{"openalex":"https://openalex.org/W2943166830","doi":"https://doi.org/10.1371/journal.pcbi.1006951","mag":"2943166830","pmid":"https://pubmed.ncbi.nlm.nih.gov/31039157"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006951","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006951","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006951&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006951&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044613710","display_name":"Stelios Pavlidis","orcid":"https://orcid.org/0000-0001-9435-6064"},"institutions":[{"id":"https://openalex.org/I2800036501","display_name":"Royal Brompton & Harefield NHS Foundation Trust","ror":"https://ror.org/02218z997","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2800036501"]},{"id":"https://openalex.org/I4210118116","display_name":"Janssen (United Kingdom)","ror":"https://ror.org/02nw6hx08","country_code":"GB","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210118116"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stelios Pavlidis","raw_affiliation_strings":["Data Science Institute, Imperial College London, London, United Kingdom","Janssen Research & Development Ltd, High Wycombe, United Kingdom","National Heart and Lung Institute, Imperial College & Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-9435-6064","affiliations":[{"raw_affiliation_string":"Data Science Institute, Imperial College London, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Janssen Research & Development Ltd, High Wycombe, United Kingdom","institution_ids":["https://openalex.org/I4210118116"]},{"raw_affiliation_string":"National Heart and Lung Institute, Imperial College & Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom","institution_ids":["https://openalex.org/I2800036501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021351784","display_name":"Calixte S. Monast","orcid":"https://orcid.org/0000-0002-4724-848X"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Calixte Monast","raw_affiliation_strings":["Janssen Research & Development LLC, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4724-848X","affiliations":[{"raw_affiliation_string":"Janssen Research & Development LLC, United States of America","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103109374","display_name":"Matthew J. Loza","orcid":"https://orcid.org/0000-0002-8609-118X"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew J. Loza","raw_affiliation_strings":["Janssen Research & Development LLC, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8609-118X","affiliations":[{"raw_affiliation_string":"Janssen Research & Development LLC, United States of America","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052615756","display_name":"Patrick Branigan","orcid":"https://orcid.org/0000-0001-9741-9067"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Branigan","raw_affiliation_strings":["Janssen Research & Development LLC, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-9741-9067","affiliations":[{"raw_affiliation_string":"Janssen Research & Development LLC, United States of America","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052934339","display_name":"Kiang F. Chung","orcid":null},"institutions":[{"id":"https://openalex.org/I2800036501","display_name":"Royal Brompton & Harefield NHS Foundation Trust","ror":"https://ror.org/02218z997","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2800036501"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kiang F. Chung","raw_affiliation_strings":["National Heart and Lung Institute, Imperial College & Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Heart and Lung Institute, Imperial College & Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom","institution_ids":["https://openalex.org/I2800036501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063587197","display_name":"Ian M. Adcock","orcid":"https://orcid.org/0000-0003-2101-8843"},"institutions":[{"id":"https://openalex.org/I2800036501","display_name":"Royal Brompton & Harefield NHS Foundation Trust","ror":"https://ror.org/02218z997","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2800036501"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian M. Adcock","raw_affiliation_strings":["National Heart and Lung Institute, Imperial College & Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Heart and Lung Institute, Imperial College & Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom","institution_ids":["https://openalex.org/I2800036501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045081171","display_name":"Yike Guo","orcid":"https://orcid.org/0000-0002-3075-2161"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yike Guo","raw_affiliation_strings":["Data Science Institute, Imperial College London, London, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-3075-2161","affiliations":[{"raw_affiliation_string":"Data Science Institute, Imperial College London, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035077200","display_name":"Anthony Rowe","orcid":"https://orcid.org/0000-0003-1829-1179"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Rowe","raw_affiliation_strings":["Janssen Research & Development LLC, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janssen Research & Development LLC, United States of America","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013446926","display_name":"Fr\u00e9d\u00e9ric Baribaud","orcid":"https://orcid.org/0000-0001-9233-1664"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fr\u00e9d\u00e9ric Baribaud","raw_affiliation_strings":["Janssen Research & Development LLC, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-9233-1664","affiliations":[{"raw_affiliation_string":"Janssen Research & Development LLC, United States of America","institution_ids":["https://openalex.org/I4210151386"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5013446926"],"corresponding_institution_ids":["https://openalex.org/I4210151386"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.2397,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.91843641,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"4","first_page":"e1006951","last_page":"e1006951"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12528","display_name":"IL-33, ST2, and ILC Pathways","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13569","display_name":"Microscopic Colitis","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inflammatory-bowel-disease","display_name":"Inflammatory bowel disease","score":0.7617142200469971},{"id":"https://openalex.org/keywords/ulcerative-colitis","display_name":"Ulcerative colitis","score":0.7383455038070679},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6461366415023804},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.619047224521637},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.5465162396430969},{"id":"https://openalex.org/keywords/crohns-disease","display_name":"Crohn's disease","score":0.49580058455467224},{"id":"https://openalex.org/keywords/gastroenterology","display_name":"Gastroenterology","score":0.35949790477752686},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3205580711364746}],"concepts":[{"id":"https://openalex.org/C2778260677","wikidata":"https://www.wikidata.org/wiki/Q917447","display_name":"Inflammatory bowel disease","level":3,"score":0.7617142200469971},{"id":"https://openalex.org/C2780479503","wikidata":"https://www.wikidata.org/wiki/Q1477","display_name":"Ulcerative colitis","level":3,"score":0.7383455038070679},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6461366415023804},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.619047224521637},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.5465162396430969},{"id":"https://openalex.org/C2779280984","wikidata":"https://www.wikidata.org/wiki/Q1472","display_name":"Crohn's disease","level":3,"score":0.49580058455467224},{"id":"https://openalex.org/C90924648","wikidata":"https://www.wikidata.org/wiki/Q120569","display_name":"Gastroenterology","level":1,"score":0.35949790477752686},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3205580711364746}],"mesh":[{"descriptor_ui":"D000069285","descriptor_name":"Infliximab","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000069285","descriptor_name":"Infliximab","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000069285","descriptor_name":"Infliximab","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005765","descriptor_name":"Gastrointestinal Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D005765","descriptor_name":"Gastrointestinal Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D005765","descriptor_name":"Gastrointestinal Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016903","descriptor_name":"Drug Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016903","descriptor_name":"Drug Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016903","descriptor_name":"Drug Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1006951","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006951","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006951&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31039157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31039157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-122833","is_oa":true,"landing_page_url":"https://repository.hkust.edu.hk/ir/Record/1783.1-122833","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1006951","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006951","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:e80402447249447585e5e6ba57a2a2b1","is_oa":true,"landing_page_url":"https://doaj.org/article/e80402447249447585e5e6ba57a2a2b1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 4, p e1006951 (2019)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/8060132","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/I_MDS_an_inflammatory_bowel_disease_molecular_activity_score_to_classify_patients_with_differing_disease-driving_pathways_and_therapeutic_response_to_anti-TNF_treatment/8060132","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:6510457","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6510457","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/69530","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/69530","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006951","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006951","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006951&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2943166830.pdf","grobid_xml":"https://content.openalex.org/works/W2943166830.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W91820633","https://openalex.org/W308397498","https://openalex.org/W1547943993","https://openalex.org/W1587026990","https://openalex.org/W1589464081","https://openalex.org/W1595949461","https://openalex.org/W1894919052","https://openalex.org/W1920944667","https://openalex.org/W1946093640","https://openalex.org/W1970338050","https://openalex.org/W1972922858","https://openalex.org/W1979948289","https://openalex.org/W1986775143","https://openalex.org/W1989580445","https://openalex.org/W1993563063","https://openalex.org/W1994196052","https://openalex.org/W1994420290","https://openalex.org/W1997153399","https://openalex.org/W2001677047","https://openalex.org/W2005553679","https://openalex.org/W2017297281","https://openalex.org/W2017676790","https://openalex.org/W2019933066","https://openalex.org/W2021492697","https://openalex.org/W2024346860","https://openalex.org/W2031062609","https://openalex.org/W2046882952","https://openalex.org/W2050802459","https://openalex.org/W2051242965","https://openalex.org/W2051465794","https://openalex.org/W2053219760","https://openalex.org/W2053303708","https://openalex.org/W2053381280","https://openalex.org/W2064346298","https://openalex.org/W2065968189","https://openalex.org/W2069931076","https://openalex.org/W2072907428","https://openalex.org/W2073022365","https://openalex.org/W2073121745","https://openalex.org/W2077064565","https://openalex.org/W2080165453","https://openalex.org/W2081951192","https://openalex.org/W2084426523","https://openalex.org/W2087727538","https://openalex.org/W2096701144","https://openalex.org/W2107944035","https://openalex.org/W2112228294","https://openalex.org/W2126874760","https://openalex.org/W2134422149","https://openalex.org/W2135000328","https://openalex.org/W2136221987","https://openalex.org/W2139186763","https://openalex.org/W2145245891","https://openalex.org/W2146906769","https://openalex.org/W2154824668","https://openalex.org/W2159707944","https://openalex.org/W2160966000","https://openalex.org/W2161377277","https://openalex.org/W2166761831","https://openalex.org/W2171122944","https://openalex.org/W2194307286","https://openalex.org/W2257361932","https://openalex.org/W2271707007","https://openalex.org/W2295122862","https://openalex.org/W2300983099","https://openalex.org/W2345916622","https://openalex.org/W2400356130","https://openalex.org/W2402628576","https://openalex.org/W2411597002","https://openalex.org/W2476770332","https://openalex.org/W2529705542","https://openalex.org/W2749616891","https://openalex.org/W3004151993","https://openalex.org/W3029052526","https://openalex.org/W4210972027","https://openalex.org/W4253323169","https://openalex.org/W4285719527","https://openalex.org/W4399649500","https://openalex.org/W6640097650"],"related_works":["https://openalex.org/W4383420693","https://openalex.org/W2025062623","https://openalex.org/W4207046311","https://openalex.org/W2147907790","https://openalex.org/W4380486554","https://openalex.org/W2072611122","https://openalex.org/W2383105242","https://openalex.org/W2019430989","https://openalex.org/W4381193501","https://openalex.org/W2094862489"],"abstract_inverted_index":{"Crohn's":[0,82,158],"disease":[1,83,152,193,208],"and":[2,10,35,45,69,84,99,127,132,157,167,173,222,229,232,246,254],"ulcerative":[3,85,155],"colitis":[4,86,156],"are":[5],"driven":[6],"by":[7,21],"both":[8,143],"common":[9],"distinct":[11],"underlying":[12,290],"mechanisms":[13],"of":[14,53,62,65,136,150,177,183,189,219,256,278,296],"pathobiology.":[15],"Both":[16],"diseases,":[17],"exhibit":[18],"heterogeneity":[19],"underscored":[20],"the":[22,137,148,294],"variable":[23],"clinical":[24,97,220,279,297],"responses":[25],"to":[26,31,47,73,117,205,251,281],"therapeutic":[27],"interventions.":[28],"We":[29,49],"aimed":[30],"identify":[32],"disease-driving":[33,179],"pathways":[34],"classify":[36],"individuals":[37],"into":[38],"subpopulations":[39],"that":[40,78,240],"differ":[41],"in":[42,96,124,130,142,235,265],"their":[43],"pathobiology":[44],"response":[46],"treatment.":[48],"applied":[50],"hierarchical":[51],"clustering":[52],"enrichment":[54,107],"scores":[55,108],"derived":[56],"from":[57,214],"gene":[58],"set":[59,239],"variation":[60],"analysis":[61],"signatures":[63,138,186,257],"representative":[64],"various":[66],"immunological":[67],"processes":[68],"activated":[70],"cell":[71],"types,":[72],"a":[74,112,151,174,202],"colonic":[75],"biopsy":[76,199],"dataset":[77],"included":[79,161],"healthy":[80,118,215],"volunteers,":[81],"patients.":[87],"Patient":[88],"stratification":[89],"at":[90,122,145,224,249,268],"baseline":[91,123,225,250],"or":[92],"after":[93],"anti-TNF":[94],"treatment":[95],"responders":[98,131,221,245],"non-responders":[100,223,247,267],"was":[101,233],"queried.":[102],"Signatures":[103,160],"with":[104,226],"significantly":[105,184],"different":[106],"were":[109,120,139,258],"identified":[110],"using":[111],"general":[113],"linear":[114],"model.":[115],"Comparisons":[116],"controls":[119],"made":[121],"all":[125],"participants":[126],"then":[128],"separately":[129,248],"non-responders.":[133],"Fifty-nine":[134],"percent":[135],"commonly":[140],"enriched":[141,185],"conditions":[144],"baseline,":[146],"supporting":[147],"notion":[149],"continuum":[153],"within":[154],"disease.":[159],"T":[162],"cells,":[163],"macrophages,":[164],"neutrophil":[165],"activation":[166],"poly:IC":[168],"signatures,":[169],"representing":[170],"acute":[171],"inflammation":[172],"complex":[175],"mix":[176],"potential":[178],"biology.":[180],"Collectively,":[181],"identification":[182],"allowed":[187],"establishment":[188],"an":[190,236],"inflammatory":[191],"bowel":[192],"molecular":[194,263],"activity":[195],"score":[196,211],"which":[197],"uses":[198],"transcriptomics":[200],"as":[201],"surrogate":[203],"marker":[204],"accurately":[206],"track":[207],"severity.":[209],"This":[210,270],"separated":[212],"diseased":[213],"samples,":[216],"enabled":[217],"discrimination":[218],"100%":[227],"specificity":[228],"78.8%":[230],"sensitivity,":[231],"validated":[234],"independent":[237],"data":[238],"showed":[241],"comparable":[242],"classification.":[243],"Comparing":[244],"controls,":[252],"43%":[253],"70%":[255],"enriched,":[259],"respectively,":[260],"suggesting":[261],"greater":[262],"dysregulation":[264],"TNF":[266],"baseline.":[269],"methodological":[271],"approach":[272],"could":[273],"facilitate":[274],"better":[275],"targeted":[276],"design":[277],"studies":[280],"test":[282],"therapeutics,":[283],"concentrating":[284],"on":[285],"patient":[286],"subsets":[287],"sharing":[288],"similar":[289],"pathobiology,":[291],"therefore":[292],"increasing":[293],"likelihood":[295],"response.":[298]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
