{"id":"https://openalex.org/W2941355954","doi":"https://doi.org/10.1371/journal.pcbi.1006946","title":"TASmania: A bacterial Toxin-Antitoxin Systems database","display_name":"TASmania: A bacterial Toxin-Antitoxin Systems database","publication_year":2019,"publication_date":"2019-04-25","ids":{"openalex":"https://openalex.org/W2941355954","doi":"https://doi.org/10.1371/journal.pcbi.1006946","mag":"2941355954","pmid":"https://pubmed.ncbi.nlm.nih.gov/31022176"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006946","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006946","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1006946","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032196673","display_name":"Hatice Akarsu","orcid":"https://orcid.org/0000-0002-8975-0726"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I154338468","display_name":"University of Fribourg","ror":"https://ror.org/022fs9h90","country_code":"CH","type":"education","lineage":["https://openalex.org/I154338468"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Hatice Akarsu","raw_affiliation_strings":["Department of Biology, University of Fribourg & Swiss Institute of Bioinformatics, Fribourg, Switzerland","University of Freiburg [Freiburg] (Friedrichstr. 39 79098 Freiburg - Germany)","SIB - Swiss Institute of Bioinformatics [Gen\u00e8ve] (rue Michel-Servet 1, 1211 Geneva 4 - Switzerland)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Fribourg & Swiss Institute of Bioinformatics, Fribourg, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I154338468"]},{"raw_affiliation_string":"University of Freiburg [Freiburg] (Friedrichstr. 39 79098 Freiburg - Germany)","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"SIB - Swiss Institute of Bioinformatics [Gen\u00e8ve] (rue Michel-Servet 1, 1211 Geneva 4 - Switzerland)","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039069848","display_name":"Patricia Bordes","orcid":"https://orcid.org/0000-0002-5746-0556"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4405266242","display_name":"Centre de Biologie Int\u00e9grative de Toulouse","ror":"https://ror.org/01f4pb571","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4405258862","https://openalex.org/I4405266242"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patricia Bordes","raw_affiliation_strings":["Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)","CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4210149702","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)","institution_ids":["https://openalex.org/I4210149702"]},{"raw_affiliation_string":"CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","institution_ids":["https://openalex.org/I134560555","https://openalex.org/I4405266242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057914692","display_name":"Mo\u00efse Mansour","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4405266242","display_name":"Centre de Biologie Int\u00e9grative de Toulouse","ror":"https://ror.org/01f4pb571","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4405258862","https://openalex.org/I4405266242"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Moise Mansour","raw_affiliation_strings":["Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0003-1028-6113","affiliations":[{"raw_affiliation_string":"Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4210149702","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","institution_ids":["https://openalex.org/I134560555","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)","institution_ids":["https://openalex.org/I4210149702"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031754802","display_name":"Donna-Joe Bigot","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4405266242","display_name":"Centre de Biologie Int\u00e9grative de Toulouse","ror":"https://ror.org/01f4pb571","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4405258862","https://openalex.org/I4405266242"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Donna-Joe Bigot","raw_affiliation_strings":["Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4210149702","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","institution_ids":["https://openalex.org/I134560555","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)","institution_ids":["https://openalex.org/I4210149702"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078468797","display_name":"Pierre Genevaux","orcid":"https://orcid.org/0000-0001-7539-3126"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210149702","display_name":"Laboratoire de Microbiologie et G\u00e9n\u00e9tique Mol\u00e9culaires","ror":"https://ror.org/04rrj3a80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210149702","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4405266242","display_name":"Centre de Biologie Int\u00e9grative de Toulouse","ror":"https://ror.org/01f4pb571","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4405258862","https://openalex.org/I4405266242"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Genevaux","raw_affiliation_strings":["Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0001-7539-3126","affiliations":[{"raw_affiliation_string":"Laboratoire de Microbiologie et de G\u00e9n\u00e9tique Mol\u00e9culaires (LMGM), Centre de Biologie Int\u00e9grative (CBI), Universit\u00e9 de Toulouse, CNRS, UPS, Toulouse, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4210149702","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"CBI - Centre de Biologie Int\u00e9grative (Universit\u00e9 Paul Sabatier,18 Route de Narbonne, 31062 Toulouse - France)","institution_ids":["https://openalex.org/I134560555","https://openalex.org/I4405266242"]},{"raw_affiliation_string":"LMGM - Laboratoire de microbiologie et g\u00e9n\u00e9tique mol\u00e9culaires - UMR5100 (118 route de Narbonne 31062 Toulouse cedex 9 - France)","institution_ids":["https://openalex.org/I4210149702"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009886872","display_name":"Laurent Falquet","orcid":"https://orcid.org/0000-0001-8102-7579"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I154338468","display_name":"University of Fribourg","ror":"https://ror.org/022fs9h90","country_code":"CH","type":"education","lineage":["https://openalex.org/I154338468"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["CH","DE"],"is_corresponding":true,"raw_author_name":"Laurent Falquet","raw_affiliation_strings":["Department of Biology, University of Fribourg & Swiss Institute of Bioinformatics, Fribourg, Switzerland","University of Freiburg [Freiburg] (Friedrichstr. 39 79098 Freiburg - Germany)","SIB - Swiss Institute of Bioinformatics [Gen\u00e8ve] (rue Michel-Servet 1, 1211 Geneva 4 - Switzerland)"],"raw_orcid":"https://orcid.org/0000-0001-8102-7579","affiliations":[{"raw_affiliation_string":"Department of Biology, University of Fribourg & Swiss Institute of Bioinformatics, Fribourg, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I154338468"]},{"raw_affiliation_string":"University of Freiburg [Freiburg] (Friedrichstr. 39 79098 Freiburg - Germany)","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"SIB - Swiss Institute of Bioinformatics [Gen\u00e8ve] (rue Michel-Servet 1, 1211 Geneva 4 - Switzerland)","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5009886872"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I154338468","https://openalex.org/I161046081"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2102,"currency":"EUR","value_usd":2267},"fwci":10.0433,"has_fulltext":false,"cited_by_count":128,"citation_normalized_percentile":{"value":0.98779719,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"15","issue":"4","first_page":"e1006946","last_page":"e1006946"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antitoxin","display_name":"Antitoxin","score":0.8601787090301514},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7219203114509583},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.7024692296981812},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.6456218957901001},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46706515550613403},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43676796555519104},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42681893706321716},{"id":"https://openalex.org/keywords/phylum","display_name":"Phylum","score":0.4140043258666992},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3861427307128906},{"id":"https://openalex.org/keywords/toxin","display_name":"Toxin","score":0.3677482306957245},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.09244561195373535},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07846000790596008}],"concepts":[{"id":"https://openalex.org/C2778973234","wikidata":"https://www.wikidata.org/wiki/Q584135","display_name":"Antitoxin","level":3,"score":0.8601787090301514},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7219203114509583},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.7024692296981812},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.6456218957901001},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46706515550613403},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43676796555519104},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42681893706321716},{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.4140043258666992},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3861427307128906},{"id":"https://openalex.org/C2777367657","wikidata":"https://www.wikidata.org/wiki/Q184651","display_name":"Toxin","level":2,"score":0.3677482306957245},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.09244561195373535},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07846000790596008}],"mesh":[{"descriptor_ui":"D000992","descriptor_name":"Antitoxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000992","descriptor_name":"Antitoxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000992","descriptor_name":"Antitoxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000992","descriptor_name":"Antitoxins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000992","descriptor_name":"Antitoxins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000992","descriptor_name":"Antitoxins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D001427","descriptor_name":"Bacterial Toxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001427","descriptor_name":"Bacterial Toxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001427","descriptor_name":"Bacterial Toxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001427","descriptor_name":"Bacterial Toxins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D001427","descriptor_name":"Bacterial Toxins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D001427","descriptor_name":"Bacterial Toxins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1006946","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006946","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31022176","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31022176","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-02397097v1","is_oa":true,"landing_page_url":"https://hal.science/hal-02397097","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2019, 15 (4), pp.e1006946. &#x27E8;10.1371/journal.pcbi.1006946&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1006946","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006946","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:99d3f38682d74905b9b0df74b9b5dec6","is_oa":true,"landing_page_url":"https://doaj.org/article/99d3f38682d74905b9b0df74b9b5dec6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 4, p e1006946 (2019)","raw_type":"article"},{"id":"pmh:oai:doc.rero.ch:20190626145040-BL","is_oa":false,"landing_page_url":"https://shiny.bioinformatics.unibe.ch/apps/tasmania/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:figshare.com:article/8041562","is_oa":true,"landing_page_url":"https://figshare.com/articles/TASmania_A_bacterial_Toxin-Antitoxin_Systems_database/8041562","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:6504116","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6504116","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006946","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006946","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.41999998688697815,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G6758645512","display_name":null,"funder_award_id":"CRSII3_160703","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320310992","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320323471","display_name":"Universit\u00e9 de Fribourg","ror":"https://ror.org/022fs9h90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W1518977299","https://openalex.org/W1565204025","https://openalex.org/W1590630614","https://openalex.org/W1666867306","https://openalex.org/W1908200642","https://openalex.org/W1937221332","https://openalex.org/W1977293483","https://openalex.org/W1982583457","https://openalex.org/W1984831154","https://openalex.org/W1986703858","https://openalex.org/W1996357994","https://openalex.org/W2005548636","https://openalex.org/W2015402183","https://openalex.org/W2016912614","https://openalex.org/W2017550427","https://openalex.org/W2021350676","https://openalex.org/W2021670925","https://openalex.org/W2031753305","https://openalex.org/W2051584259","https://openalex.org/W2053935595","https://openalex.org/W2061399892","https://openalex.org/W2062925000","https://openalex.org/W2075518131","https://openalex.org/W2076073652","https://openalex.org/W2083873972","https://openalex.org/W2084558677","https://openalex.org/W2091161501","https://openalex.org/W2093814623","https://openalex.org/W2094095960","https://openalex.org/W2103222799","https://openalex.org/W2106868489","https://openalex.org/W2107094711","https://openalex.org/W2108588173","https://openalex.org/W2111751534","https://openalex.org/W2112724277","https://openalex.org/W2120772351","https://openalex.org/W2123082123","https://openalex.org/W2126573196","https://openalex.org/W2127322768","https://openalex.org/W2127967394","https://openalex.org/W2130150648","https://openalex.org/W2132401377","https://openalex.org/W2139366825","https://openalex.org/W2139452383","https://openalex.org/W2142512761","https://openalex.org/W2144656637","https://openalex.org/W2149292210","https://openalex.org/W2159675211","https://openalex.org/W2163406805","https://openalex.org/W2164814134","https://openalex.org/W2167601167","https://openalex.org/W2167639479","https://openalex.org/W2167970541","https://openalex.org/W2169235657","https://openalex.org/W2170305714","https://openalex.org/W2171392588","https://openalex.org/W2229297191","https://openalex.org/W2417855243","https://openalex.org/W2537623931","https://openalex.org/W2557496587","https://openalex.org/W2588841384","https://openalex.org/W2604858366","https://openalex.org/W2766195206","https://openalex.org/W2767051074","https://openalex.org/W2950954328"],"related_works":["https://openalex.org/W1696096160","https://openalex.org/W4313360493","https://openalex.org/W2018113813","https://openalex.org/W2947296653","https://openalex.org/W1600221585","https://openalex.org/W3115115073","https://openalex.org/W2902371760","https://openalex.org/W323720999","https://openalex.org/W1997179601","https://openalex.org/W2335329258"],"abstract_inverted_index":{"Bacterial":[0],"Toxin-Antitoxin":[1],"systems":[2],"(TAS)":[3],"are":[4,20],"involved":[5],"in":[6,22,58,113,116,166,178,186],"key":[7],"biological":[8],"functions":[9],"including":[10,104],"plasmid":[11],"maintenance,":[12],"defense":[13],"against":[14],"phages,":[15],"persistence":[16],"and":[17,26,75,107,109,172],"virulence.":[18],"They":[19],"found":[21],"nearly":[23],"all":[24],"phyla":[25],"classified":[27],"into":[28],"6":[29],"different":[30],"types":[31],"based":[32,91,123],"on":[33,92,124,139,197],"the":[34,39,42,47,66,70,89,111,132,142,158,168,173,198],"mode":[35],"of":[36,38,69,79,95,141,157],"inactivation":[37],"toxin,":[40],"with":[41,135],"type":[43,80],"II":[44],"TAS":[45,84,121,134,174],"being":[46],"best":[48],"characterized":[49],"so":[50],"far.":[51],"We":[52],"have":[53],"herein":[54],"developed":[55],"a":[56,93,125,153],"new":[57,120,184],"silico":[59],"discovery":[60],"pipeline":[61,87],"named":[62],"TASmania,":[63],"which":[64,98],"mines":[65],">41K":[67],"assemblies":[68],"EnsemblBacteria":[71],"database":[72,194],"for":[73],"known":[74],"uncharacterized":[76],"protein":[77],"components":[78],"I":[81],"to":[82,100,118,148],"IV":[83],"loci.":[85],"Our":[86],"annotates":[88],"proteins":[90],"list":[94],"curated":[96],"HMMs,":[97],"leads":[99],">2.106":[101],"loci":[102],"candidates,":[103],"orphan":[105],"toxins":[106],"antitoxins,":[108],"organises":[110],"candidates":[112,122],"pseudo-operon":[114,143],"structures":[115,171],"order":[117],"identify":[119],"guilt-by-association":[126],"strategy.":[127],"In":[128],"addition,":[129],"we":[130],"classify":[131],"two-component":[133],"an":[136],"unsupervised":[137],"method":[138],"top":[140],"(pop)":[144],"gene":[145],"structures,":[146],"leading":[147],"1567":[149],"\"popTA\"":[150],"models":[151],"offering":[152],"more":[154],"robust":[155],"classification":[156],"TAs":[159],"families.":[160],"These":[161],"results":[162],"give":[163],"valuable":[164],"clues":[165],"understanding":[167],"toxin/antitoxin":[169],"modular":[170],"phylum":[175],"specificities.":[176],"Preliminary":[177],"vivo":[179],"work":[180],"confirmed":[181],"six":[182],"putative":[183],"hits":[185],"Mycobacterium":[187],"tuberculosis":[188],"as":[189],"promising":[190],"candidates.":[191],"The":[192],"TASmania":[193],"is":[195],"available":[196],"following":[199],"server":[200],"https://shiny.bioinformatics.unibe.ch/apps/tasmania/.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
