{"id":"https://openalex.org/W2921130302","doi":"https://doi.org/10.1371/journal.pcbi.1006856","title":"A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows","display_name":"A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows","publication_year":2019,"publication_date":"2019-03-08","ids":{"openalex":"https://openalex.org/W2921130302","doi":"https://doi.org/10.1371/journal.pcbi.1006856","mag":"2921130302","pmid":"https://pubmed.ncbi.nlm.nih.gov/30849072"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006856","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006856","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006856&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006856&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101893113","display_name":"Pei\u2010Chi Yang","orcid":"https://orcid.org/0000-0002-5753-1131"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pei-Chi Yang","raw_affiliation_strings":["Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5753-1131","affiliations":[{"raw_affiliation_string":"Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010043183","display_name":"Shweta Purawat","orcid":"https://orcid.org/0000-0002-5183-2750"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shweta Purawat","raw_affiliation_strings":["San Diego Supercomputer Center (SDSC), University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-5183-2750","affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center (SDSC), University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000860959","display_name":"Pek U. Ieong","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pek U. Ieong","raw_affiliation_strings":["Department of Chemistry and Biochemistry, National Biomedical Computation Resource, Drug Design Data Resource (D3R), University of California San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, National Biomedical Computation Resource, Drug Design Data Resource (D3R), University of California San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067983537","display_name":"Mao-Tsuen Jeng","orcid":"https://orcid.org/0000-0003-4454-4299"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mao-Tsuen Jeng","raw_affiliation_strings":["Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-4454-4299","affiliations":[{"raw_affiliation_string":"Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055449255","display_name":"Kevin R. DeMarco","orcid":"https://orcid.org/0000-0001-6581-2497"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kevin R. DeMarco","raw_affiliation_strings":["Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031310158","display_name":"Igor Vorobyov","orcid":"https://orcid.org/0000-0002-4767-5297"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Igor Vorobyov","raw_affiliation_strings":["Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4767-5297","affiliations":[{"raw_affiliation_string":"Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033811596","display_name":"Andrew D. McCulloch","orcid":"https://orcid.org/0000-0002-1708-5675"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew D. McCulloch","raw_affiliation_strings":["Departments of Bioengineering and Medicine, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1708-5675","affiliations":[{"raw_affiliation_string":"Departments of Bioengineering and Medicine, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028701796","display_name":"\u0130lkay Alt\u0131nta\u015f","orcid":"https://orcid.org/0000-0002-2196-0305"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ilkay Altintas","raw_affiliation_strings":["San Diego Supercomputer Center (SDSC), University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center (SDSC), University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081468273","display_name":"Rommie E. Amaro","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rommie E. Amaro","raw_affiliation_strings":["Department of Chemistry and Biochemistry, National Biomedical Computation Resource, Drug Design Data Resource (D3R), University of California San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, National Biomedical Computation Resource, Drug Design Data Resource (D3R), University of California San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031553126","display_name":"Colleen E. Clancy","orcid":"https://orcid.org/0000-0001-6849-4885"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Colleen E. Clancy","raw_affiliation_strings":["Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6849-4885","affiliations":[{"raw_affiliation_string":"Department of Physiology and Membrane Biology, Department of Pharmacology, School of Medicine, University of California Davis, Davis, California, United States of America","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000860959","https://openalex.org/A5010043183","https://openalex.org/A5028701796","https://openalex.org/A5031310158","https://openalex.org/A5031553126","https://openalex.org/A5033811596","https://openalex.org/A5055449255","https://openalex.org/A5067983537","https://openalex.org/A5081468273","https://openalex.org/A5101893113"],"corresponding_institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959","https://openalex.org/I84218800"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.545,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.93368482,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"15","issue":"3","first_page":"e1006856","last_page":"e1006856"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8123894333839417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7577351331710815},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.7078409194946289},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6441339254379272},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6147170066833496},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6004949808120728},{"id":"https://openalex.org/keywords/cardiac-electrophysiology","display_name":"Cardiac electrophysiology","score":0.5712088942527771},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.4764041006565094},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.46409764885902405},{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.43343502283096313},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4153140187263489},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3670046329498291},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20926666259765625},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15823596715927124},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11090087890625},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10045015811920166}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8123894333839417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7577351331710815},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.7078409194946289},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6441339254379272},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6147170066833496},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6004949808120728},{"id":"https://openalex.org/C61381695","wikidata":"https://www.wikidata.org/wiki/Q3302130","display_name":"Cardiac electrophysiology","level":3,"score":0.5712088942527771},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.4764041006565094},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.46409764885902405},{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.43343502283096313},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4153140187263489},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3670046329498291},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20926666259765625},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15823596715927124},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11090087890625},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10045015811920166},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C185263204","wikidata":"https://www.wikidata.org/wiki/Q1154774","display_name":"Electrophysiology","level":2,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008955","descriptor_name":"Models, Cardiovascular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008955","descriptor_name":"Models, Cardiovascular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008955","descriptor_name":"Models, Cardiovascular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008955","descriptor_name":"Models, Cardiovascular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1006856","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006856","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006856&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30849072","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30849072","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:ark:/13030/qt52k7q9pn","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1006856","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006856","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:a9798631d43e4238936e418a85225114","is_oa":true,"landing_page_url":"https://doaj.org/article/a9798631d43e4238936e418a85225114","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 3, p e1006856 (2019)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt52k7q9pn","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/52k7q9pn","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology, vol 15, iss 3","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5425444","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6426265","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006856","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006856","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006856&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G123209318","display_name":null,"funder_award_id":"R01HL121754","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G1238206322","display_name":null,"funder_award_id":"U01GM111528","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G133014301","display_name":null,"funder_award_id":"R01HL128537","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1351713346","display_name":null,"funder_award_id":"R01HL128170","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G145338696","display_name":null,"funder_award_id":"P41 GM103426","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1778647488","display_name":null,"funder_award_id":"U01HL122199","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2668769612","display_name":null,"funder_award_id":"R01HL137100","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4085294414","display_name":null,"funder_award_id":"U01HL126273","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5074693385","display_name":null,"funder_award_id":"OT2 OD026580","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5075769955","display_name":null,"funder_award_id":"R01 HL137100","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5475673595","display_name":null,"funder_award_id":"U01 HL122199","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5795294121","display_name":null,"funder_award_id":"U01 GM111528","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5802362179","display_name":null,"funder_award_id":"R01 HL128170","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G6061583175","display_name":null,"funder_award_id":"R01 HL128537","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G642825970","display_name":null,"funder_award_id":"U01HL122199","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7181117072","display_name":null,"funder_award_id":"U01 HL126273","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7310023166","display_name":null,"funder_award_id":"U01HL126273","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7528240949","display_name":null,"funder_award_id":"R01HL128537","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7670660294","display_name":null,"funder_award_id":"R01 HL121754","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8068271066","display_name":null,"funder_award_id":"P41GM103426","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8300305461","display_name":null,"funder_award_id":"OT2OD026580","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8810718749","display_name":null,"funder_award_id":"U01GM111528","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2921130302.pdf","grobid_xml":"https://content.openalex.org/works/W2921130302.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W64130124","https://openalex.org/W1501507312","https://openalex.org/W1505612411","https://openalex.org/W1582664144","https://openalex.org/W1589685702","https://openalex.org/W1599569911","https://openalex.org/W1876567013","https://openalex.org/W1966081827","https://openalex.org/W1968856255","https://openalex.org/W1983833794","https://openalex.org/W1991339919","https://openalex.org/W2003017496","https://openalex.org/W2003503318","https://openalex.org/W2015858788","https://openalex.org/W2022280610","https://openalex.org/W2024766567","https://openalex.org/W2028685719","https://openalex.org/W2037613535","https://openalex.org/W2038131479","https://openalex.org/W2040151959","https://openalex.org/W2047309639","https://openalex.org/W2061451182","https://openalex.org/W2079329400","https://openalex.org/W2098040115","https://openalex.org/W2106351593","https://openalex.org/W2107658445","https://openalex.org/W2107867006","https://openalex.org/W2113562700","https://openalex.org/W2113777491","https://openalex.org/W2123604001","https://openalex.org/W2123663722","https://openalex.org/W2123783513","https://openalex.org/W2129659530","https://openalex.org/W2129986196","https://openalex.org/W2134486011","https://openalex.org/W2134824774","https://openalex.org/W2144109094","https://openalex.org/W2150180559","https://openalex.org/W2154513453","https://openalex.org/W2162439461","https://openalex.org/W2162834159","https://openalex.org/W2171926758","https://openalex.org/W2187364252","https://openalex.org/W2200241032","https://openalex.org/W2203303353","https://openalex.org/W2293578667","https://openalex.org/W2320969362","https://openalex.org/W2462126411","https://openalex.org/W2475873741","https://openalex.org/W2490209367","https://openalex.org/W2512710853","https://openalex.org/W2524827175","https://openalex.org/W2531582823","https://openalex.org/W2559930736","https://openalex.org/W2585443970","https://openalex.org/W2597357676","https://openalex.org/W2597830139","https://openalex.org/W2619951286","https://openalex.org/W2750984562","https://openalex.org/W2754002459","https://openalex.org/W2766766128","https://openalex.org/W2767921673","https://openalex.org/W2768231626","https://openalex.org/W2770399537","https://openalex.org/W2782492459","https://openalex.org/W2789816182","https://openalex.org/W2790008978","https://openalex.org/W2950976461","https://openalex.org/W2951315938","https://openalex.org/W3103625593","https://openalex.org/W4238943364","https://openalex.org/W4252427272","https://openalex.org/W6635333852"],"related_works":["https://openalex.org/W273500195","https://openalex.org/W2043019925","https://openalex.org/W4236056781","https://openalex.org/W4293768956","https://openalex.org/W2071953960","https://openalex.org/W2423573568","https://openalex.org/W2262354220","https://openalex.org/W2087732651","https://openalex.org/W1988916448","https://openalex.org/W1974222580"],"abstract_inverted_index":{"Multi-scale":[0],"computational":[1,8,99,117,142],"modeling":[2,100],"is":[3,111,172],"a":[4,63,112,141,147,152,161],"major":[5,21],"branch":[6],"of":[7,31,81,115,149,151,160,192],"biology":[9,118],"as":[10,53,121,146],"evidenced":[11],"by":[12,209],"the":[13,43,79,155,193],"US":[14],"federal":[15],"interagency":[16],"Multi-Scale":[17],"Modeling":[18],"Consortium":[19],"and":[20,28,34,40,42,51,90,103,128,139,158,163,168,175,182,187],"international":[22],"projects.":[23],"It":[24],"invariably":[25],"involves":[26],"specific":[27],"detailed":[29],"sequences":[30],"data":[32,91],"analysis":[33],"simulation,":[35],"often":[36],"with":[37],"multiple":[38],"tools":[39],"datasets,":[41],"community":[44],"recognizes":[45],"improved":[46],"modularity,":[47],"reuse,":[48],"reproducibility,":[49],"portability":[50],"scalability":[52],"critical":[54],"unmet":[55],"needs":[56,69],"in":[57,70,84,97,101,106],"this":[58,134],"area.":[59],"Scientific":[60],"workflows":[61,83],"are":[62,75,94],"well-recognized":[64],"strategy":[65],"for":[66,126,154,185],"addressing":[67],"these":[68],"scientific":[71,82,131],"computing.":[72],"While":[73],"there":[74,93],"good":[76],"examples":[77,96],"if":[78],"use":[80,124],"bioinformatics,":[85],"medical":[86],"informatics,":[87],"biomedical":[88],"imaging":[89],"analysis,":[92],"fewer":[95],"multi-scale":[98,116,165],"general":[102],"cardiac":[104,166],"electrophysiology":[105,109],"particular.":[107],"Cardiac":[108],"simulation":[110],"mature":[113],"area":[114],"that":[119,144,171],"serves":[120,145],"an":[122],"excellent":[123],"case":[125],"developing":[127],"testing":[129],"new":[130],"workflows.":[132],"In":[133],"article,":[135],"we":[136,196],"develop,":[137],"describe":[138],"test":[140],"workflow":[143,178,194,206],"proof":[148],"concept":[150],"platform":[153],"robust":[156],"integration":[157],"implementation":[159],"reusable":[162],"reproducible":[164],"cell":[167],"tissue":[169],"model":[170],"expandable,":[173],"modular":[174],"portable.":[176],"The":[177],"described":[179],"leverages":[180],"Python":[181],"Kepler-Python":[183],"actor":[184],"plotting":[186],"pre/post-processing.":[188],"During":[189],"all":[190],"stages":[191],"design,":[195],"rely":[197],"on":[198],"freely":[199,207],"available":[200],"open-source":[201],"tools,":[202],"to":[203],"make":[204],"our":[205],"usable":[208],"scientists.":[210]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
