{"id":"https://openalex.org/W2949519411","doi":"https://doi.org/10.1371/journal.pcbi.1006663","title":"Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods","display_name":"Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods","publication_year":2019,"publication_date":"2019-01-02","ids":{"openalex":"https://openalex.org/W2949519411","doi":"https://doi.org/10.1371/journal.pcbi.1006663","mag":"2949519411","pmid":"https://pubmed.ncbi.nlm.nih.gov/30601803"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006663","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006663","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006663&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006663&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029608541","display_name":"Song-Yao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Song-Yao Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029608541","display_name":"Song-Yao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Song-Yao Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061712236","display_name":"Shao\u2010Wu Zhang","orcid":"https://orcid.org/0000-0003-1305-7447"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Shao-Wu Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061712236","display_name":"Shao\u2010Wu Zhang","orcid":"https://orcid.org/0000-0003-1305-7447"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]},{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Shao-Wu Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","Department of Biological Sciences, HRINU, SUERI, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Biological Sciences, HRINU, SUERI, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, China","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108683799","display_name":"Xiao-Nan Fan","orcid":null},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xiao-Nan Fan","raw_affiliation_strings":["Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","Department of Epidemiology and Biostatistics, University of Texas Health San Antonio, San Antonio, Texas, United States of America"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of Texas Health San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204","https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062986831","display_name":"Jia Meng","orcid":"https://orcid.org/0000-0003-3455-205X"},"institutions":[{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]},{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jia Meng","raw_affiliation_strings":["Department of Biological Sciences, HRINU, SUERI, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, China","UPMC Hillman Cancer Center and Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, HRINU, SUERI, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"UPMC Hillman Cancer Center and Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210128526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100689057","display_name":"Yidong Chen","orcid":"https://orcid.org/0000-0001-6806-2185"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yidong Chen","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, University of Texas Health San Antonio, San Antonio, Texas, United States of America","Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of Texas Health San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204","https://openalex.org/I165951966"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010896860","display_name":"Shou\u2010Jiang Gao","orcid":"https://orcid.org/0000-0001-6194-1742"},"institutions":[{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shou-Jiang Gao","raw_affiliation_strings":["UPMC Hillman Cancer Center and Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America"],"affiliations":[{"raw_affiliation_string":"UPMC Hillman Cancer Center and Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I4210128526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","Department of Epidemiology and Biostatistics, University of Texas Health San Antonio, San Antonio, Texas, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of Texas Health San Antonio, San Antonio, Texas, United States of America","institution_ids":["https://openalex.org/I45438204","https://openalex.org/I165951966"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5029608541","https://openalex.org/A5061712236","https://openalex.org/A5068887242"],"corresponding_institution_ids":["https://openalex.org/I165951966","https://openalex.org/I17145004","https://openalex.org/I45438204"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.5767,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.90484964,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"e1006663","last_page":"e1006663"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/n6-methyladenosine","display_name":"N6-Methyladenosine","score":0.7085675597190857},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6160506010055542},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6151255369186401},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5464885830879211},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.43395522236824036},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.43379640579223633},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3484818935394287},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.34355872869491577},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29811811447143555},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13032039999961853}],"concepts":[{"id":"https://openalex.org/C2775963939","wikidata":"https://www.wikidata.org/wiki/Q6951996","display_name":"N6-Methyladenosine","level":5,"score":0.7085675597190857},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6160506010055542},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6151255369186401},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5464885830879211},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.43395522236824036},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.43379640579223633},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3484818935394287},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.34355872869491577},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29811811447143555},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13032039999961853},{"id":"https://openalex.org/C91965660","wikidata":"https://www.wikidata.org/wiki/Q415875","display_name":"Methyltransferase","level":4,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1006663","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006663","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006663&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30601803","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30601803","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:1e7e80efaf964eb6bb5af3954619810c","is_oa":true,"landing_page_url":"https://doaj.org/article/1e7e80efaf964eb6bb5af3954619810c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 1, p e1006663 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5331195","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6331136","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/7541690","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Global_analysis_of_N6-methyladenosine_functions_and_its_disease_association_using_deep_learning_and_network-based_methods/7541690","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006663","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006663","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006663&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5899999737739563,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3299191655","display_name":null,"funder_award_id":"R01GM113245","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4502386164","display_name":null,"funder_award_id":"31671373","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4765083334","display_name":null,"funder_award_id":"618732","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5709834030","display_name":null,"funder_award_id":"31671373","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7653732590","display_name":null,"funder_award_id":"61473232","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8267420163","display_name":null,"funder_award_id":"61873202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8320208431","display_name":null,"funder_award_id":"91430111","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8780295424","display_name":null,"funder_award_id":"R01GM113245","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310677","display_name":"University of Texas at San Antonio","ror":"https://ror.org/01kd65564"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949519411.pdf","grobid_xml":"https://content.openalex.org/works/W2949519411.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W6908809","https://openalex.org/W776567260","https://openalex.org/W1186776093","https://openalex.org/W1499476884","https://openalex.org/W1933156045","https://openalex.org/W1941339056","https://openalex.org/W1973541913","https://openalex.org/W1997182468","https://openalex.org/W1998519606","https://openalex.org/W2009019945","https://openalex.org/W2009308529","https://openalex.org/W2011131953","https://openalex.org/W2015217788","https://openalex.org/W2022129953","https://openalex.org/W2029857102","https://openalex.org/W2037754272","https://openalex.org/W2042003093","https://openalex.org/W2044676948","https://openalex.org/W2065847836","https://openalex.org/W2066972125","https://openalex.org/W2078964320","https://openalex.org/W2080310417","https://openalex.org/W2088891952","https://openalex.org/W2091235283","https://openalex.org/W2100305481","https://openalex.org/W2100582962","https://openalex.org/W2107125136","https://openalex.org/W2108875018","https://openalex.org/W2112796928","https://openalex.org/W2114691161","https://openalex.org/W2117513900","https://openalex.org/W2119412782","https://openalex.org/W2122683221","https://openalex.org/W2123441931","https://openalex.org/W2140099276","https://openalex.org/W2140883620","https://openalex.org/W2144086069","https://openalex.org/W2155507705","https://openalex.org/W2159092541","https://openalex.org/W2165547003","https://openalex.org/W2166153887","https://openalex.org/W2180404227","https://openalex.org/W2205505631","https://openalex.org/W2239090104","https://openalex.org/W2264017649","https://openalex.org/W2287984595","https://openalex.org/W2292706259","https://openalex.org/W2306179365","https://openalex.org/W2335010255","https://openalex.org/W2336857745","https://openalex.org/W2342299314","https://openalex.org/W2345013090","https://openalex.org/W2438154367","https://openalex.org/W2462449071","https://openalex.org/W2511229982","https://openalex.org/W2530594920","https://openalex.org/W2532091902","https://openalex.org/W2563912688","https://openalex.org/W2566386603","https://openalex.org/W2573637561","https://openalex.org/W2576005654","https://openalex.org/W2600626962","https://openalex.org/W2601926225","https://openalex.org/W2604637348","https://openalex.org/W2609814551","https://openalex.org/W2754499625","https://openalex.org/W2762830435","https://openalex.org/W2765134354","https://openalex.org/W2767060943","https://openalex.org/W2767731367","https://openalex.org/W2769630486","https://openalex.org/W2770747479","https://openalex.org/W2795582682","https://openalex.org/W2799487719","https://openalex.org/W2804672687","https://openalex.org/W2888375528","https://openalex.org/W2905060314","https://openalex.org/W2915975108","https://openalex.org/W4229732967","https://openalex.org/W4248234957","https://openalex.org/W4249273120","https://openalex.org/W6650995103","https://openalex.org/W6735838370"],"related_works":["https://openalex.org/W4394526077","https://openalex.org/W3174372895","https://openalex.org/W4394106455","https://openalex.org/W3028187297","https://openalex.org/W4394458322","https://openalex.org/W4394464606","https://openalex.org/W4394416530","https://openalex.org/W4200185170","https://openalex.org/W3083941412","https://openalex.org/W3088924980"],"abstract_inverted_index":{"N6-methyladenosine":[0],"(m6A)":[1],"is":[2,65],"the":[3,17,86,122,211],"most":[4],"abundant":[5],"methylation,":[6],"existing":[7],"in":[8,22,60,70,230],">25%":[9],"of":[10,20,27,49,52,146,161,172,213],"human":[11,139],"mRNAs.":[12],"Exciting":[13],"recent":[14],"discoveries":[15],"indicate":[16],"close":[18],"involvement":[19],"m6A":[21,40,50,92,115,168,224],"regulating":[23],"many":[24,173],"different":[25],"aspects":[26],"mRNA":[28],"metabolism":[29],"and":[30,44,46,62,80,105,117,126,133,152,164,181,183,186,204,218,227],"diseases":[31,64,120,201],"like":[32],"cancer.":[33],"However,":[34],"our":[35,214],"current":[36],"knowledge":[37],"about":[38],"how":[39,47],"levels":[41,51],"are":[42],"controlled":[43],"whether":[45],"regulation":[48],"a":[53,58,73,98,107,143],"specific":[54],"gene":[55],"can":[56],"play":[57],"role":[59],"cancer":[61],"other":[63],"mostly":[66],"elusive.":[67],"We":[68,130],"propose":[69],"this":[71,134],"paper":[72],"computational":[74,216],"scheme":[75,217],"for":[76,89,222],"predicting":[77],"m6A-regulated":[78,150],"genes":[79,116,151,163,171],"m6A-associated":[81,194],"disease,":[82],"which":[83,141],"includes":[84],"Deep-m6A,":[85],"first":[87],"model":[88],"detecting":[90],"condition-specific":[91],"sites":[93],"from":[94],"MeRIP-Seq":[95],"data":[96],"with":[97],"single":[99],"base":[100],"resolution":[101],"using":[102,121],"deep":[103],"learning":[104],"Hot-m6A,":[106],"new":[108,220],"network-based":[109],"pipeline":[110,135],"that":[111,167],"prioritizes":[112],"functional":[113,158],"significant":[114,149],"its":[118,228],"associated":[119,200],"Protein-Protein":[123],"Interaction":[124],"(PPI)":[125],"gene-disease":[127],"heterogeneous":[128],"networks.":[129],"applied":[131],"Deep-m6A":[132],"to":[136],"75":[137],"MeRIP-seq":[138],"samples,":[140],"produced":[142],"compact":[144],"set":[145],"709":[147],"functionally":[148,154],"nine":[153],"enriched":[155],"subnetworks.":[156],"The":[157,193],"enrichment":[159],"analysis":[160,196],"these":[162],"networks":[165],"reveal":[166],"targets":[169],"key":[170],"critical":[174],"biological":[175],"processes":[176],"including":[177,202],"transcription,":[178],"cell":[179,184,206],"organization":[180],"transport,":[182],"proliferation":[185],"cancer-related":[187],"pathways":[188],"such":[189],"as":[190],"Wnt":[191],"pathway.":[192],"disease":[195],"prioritized":[197],"five":[198],"significantly":[199],"leukemia":[203],"renal":[205],"carcinoma.":[207],"These":[208],"results":[209],"demonstrate":[210],"power":[212],"proposed":[215],"provide":[219],"leads":[221],"understanding":[223],"regulatory":[225],"functions":[226],"roles":[229],"diseases.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":5}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
