{"id":"https://openalex.org/W2904828342","doi":"https://doi.org/10.1371/journal.pcbi.1006616","title":"SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions","display_name":"SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions","publication_year":2018,"publication_date":"2018-12-11","ids":{"openalex":"https://openalex.org/W2904828342","doi":"https://doi.org/10.1371/journal.pcbi.1006616","mag":"2904828342","pmid":"https://pubmed.ncbi.nlm.nih.gov/30533006"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006616","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006616","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006616&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006616&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100448121","display_name":"Wen Zhang","orcid":"https://orcid.org/0000-0001-5221-2628"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen Zhang","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, China","School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086600391","display_name":"Xiang Yue","orcid":"https://orcid.org/0000-0003-4547-1685"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiang Yue","raw_affiliation_strings":["Department of Computer Science and Engineering, The Ohio State University, Columbus, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Ohio State University, Columbus, United States of America","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120313674","display_name":"Guifeng Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guifeng Tang","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016008120","display_name":"Wenjian Wu","orcid":"https://orcid.org/0000-0001-5325-1186"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjian Wu","raw_affiliation_strings":["Electronic Information School, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electronic Information School, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101659632","display_name":"Feng Huang","orcid":"https://orcid.org/0000-0002-6755-6324"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Huang","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101508701","display_name":"Xining Zhang","orcid":"https://orcid.org/0000-0002-9426-6453"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xining Zhang","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0002-9426-6453","affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100448121","https://openalex.org/A5101508701"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I37461747"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.4256,"has_fulltext":true,"cited_by_count":160,"citation_normalized_percentile":{"value":0.98339588,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"14","issue":"12","first_page":"e1006616","last_page":"e1006616"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9629999995231628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.568662166595459},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.5232723951339722},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5044528245925903},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5042675733566284},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.48868921399116516},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4692003130912781},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.45355257391929626},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.4234689772129059},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.4228397607803345},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.419002890586853},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34150317311286926},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32094746828079224},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2667100131511688},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.208296537399292},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.18667423725128174},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.12544256448745728},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.09805521368980408}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.568662166595459},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.5232723951339722},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5044528245925903},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5042675733566284},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.48868921399116516},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4692003130912781},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.45355257391929626},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.4234689772129059},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.4228397607803345},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.419002890586853},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34150317311286926},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32094746828079224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2667100131511688},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.208296537399292},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.18667423725128174},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.12544256448745728},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.09805521368980408},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1006616","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006616","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006616&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30533006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30533006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1006616","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006616","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:9c70d099aae14169b1c5a22cfa972caf","is_oa":true,"landing_page_url":"https://doaj.org/article/9c70d099aae14169b1c5a22cfa972caf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 14, Iss 12, p e1006616 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5331191","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6331124","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/7450742","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/SFPEL-LPI_Sequence-based_feature_projection_ensemble_learning_for_predicting_LncRNA-protein_interactions/7450742","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006616","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006616","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006616&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1235053802","display_name":null,"funder_award_id":"2042018kf0249","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5693357935","display_name":"\u57fa\u4e8e\u836f\u7269\u5927\u6570\u636e\u7684\u6f5c\u5728\u4e0d\u826f\u836f\u7269\u53cd\u5e94\u6316\u6398\u7814\u7a76","funder_award_id":"61772381","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G793318600","display_name":"\u591a\u6e90\u57fa\u56e0\u8868\u8fbe\u5927\u6570\u636e\u6574\u5408\u53ca\u4e09\u7ef4\u52a8\u6001\u6a21\u5f0f\u8bc6\u522b\u7684\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61572368","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8323965822","display_name":null,"funder_award_id":"2042017kf0219","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8965235719","display_name":null,"funder_award_id":"2042017kf0219","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324775","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2904828342.pdf","grobid_xml":"https://content.openalex.org/works/W2904828342.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W652664929","https://openalex.org/W1161601223","https://openalex.org/W1494484168","https://openalex.org/W1559579542","https://openalex.org/W1589245967","https://openalex.org/W1976526581","https://openalex.org/W1980121140","https://openalex.org/W1990675829","https://openalex.org/W2005650685","https://openalex.org/W2019982711","https://openalex.org/W2021168471","https://openalex.org/W2022630461","https://openalex.org/W2025150647","https://openalex.org/W2026257220","https://openalex.org/W2052938279","https://openalex.org/W2071271349","https://openalex.org/W2072394638","https://openalex.org/W2082436128","https://openalex.org/W2088117005","https://openalex.org/W2089803748","https://openalex.org/W2094764962","https://openalex.org/W2099946731","https://openalex.org/W2103478816","https://openalex.org/W2103683291","https://openalex.org/W2105292164","https://openalex.org/W2108119513","https://openalex.org/W2110957978","https://openalex.org/W2114024619","https://openalex.org/W2119501676","https://openalex.org/W2123227500","https://openalex.org/W2123688186","https://openalex.org/W2129375421","https://openalex.org/W2138045300","https://openalex.org/W2145957695","https://openalex.org/W2148908145","https://openalex.org/W2156880688","https://openalex.org/W2163939328","https://openalex.org/W2165423269","https://openalex.org/W2173801226","https://openalex.org/W2234451305","https://openalex.org/W2256799280","https://openalex.org/W2257082043","https://openalex.org/W2314868955","https://openalex.org/W2336366895","https://openalex.org/W2338373933","https://openalex.org/W2339812959","https://openalex.org/W2462717230","https://openalex.org/W2469904271","https://openalex.org/W2470414691","https://openalex.org/W2472463653","https://openalex.org/W2507804718","https://openalex.org/W2508414719","https://openalex.org/W2535158955","https://openalex.org/W2570516417","https://openalex.org/W2572837991","https://openalex.org/W2572986783","https://openalex.org/W2599859080","https://openalex.org/W2605582081","https://openalex.org/W2614461365","https://openalex.org/W2626127376","https://openalex.org/W2673729825","https://openalex.org/W2739770654","https://openalex.org/W2744385491","https://openalex.org/W2751449619","https://openalex.org/W2752850911","https://openalex.org/W2753953057","https://openalex.org/W2765413914","https://openalex.org/W2766653916","https://openalex.org/W2769887238","https://openalex.org/W2771225301","https://openalex.org/W2771758625","https://openalex.org/W2772272229","https://openalex.org/W2780936345","https://openalex.org/W2782959626","https://openalex.org/W2805643613","https://openalex.org/W2809156537","https://openalex.org/W2810107880","https://openalex.org/W2914584698","https://openalex.org/W4254428219","https://openalex.org/W6743080433"],"related_works":["https://openalex.org/W2794896638","https://openalex.org/W2891633941","https://openalex.org/W3202800081","https://openalex.org/W3101614107","https://openalex.org/W1909207154","https://openalex.org/W4390971112","https://openalex.org/W3036530763","https://openalex.org/W1514365828","https://openalex.org/W3149839747","https://openalex.org/W3204228978"],"abstract_inverted_index":{"LncRNA-protein":[0],"interactions":[1,16],"play":[2],"important":[3],"roles":[4],"in":[5],"post-transcriptional":[6],"gene":[7],"regulation,":[8],"poly-adenylation,":[9],"splicing":[10],"and":[11,93,103,112,121,139],"translation.":[12],"Identification":[13],"of":[14,48,54],"lncRNA-protein":[15,35,85,114,137,166],"helps":[17],"to":[18,33,83,150],"understand":[19],"lncRNA-related":[20],"activities.":[21],"Existing":[22],"computational":[23,132],"methods":[24,50],"utilize":[25],"multiple":[26,30,100,119,122],"lncRNA":[27,90,108],"features":[28,32,38,92,123],"or":[29,45],"protein":[31,94,110],"predict":[34,84],"interactions,":[36,167],"but":[37],"are":[39,51,169],"not":[40,52],"available":[41,180],"for":[42,60],"all":[43],"lncRNAs":[44,62,152],"proteins;":[46],"most":[47],"existing":[49],"capable":[53],"predicting":[55],"interacting":[56],"proteins":[57],"(or":[58,63,153],"lncRNAs)":[59],"new":[61,151],"proteins),":[64],"which":[65,168],"don't":[66],"have":[67],"known":[68,113],"interactions.":[69,86,115],"In":[70,131],"this":[71],"paper,":[72],"we":[73,174],"propose":[74],"the":[75],"sequence-based":[76,91,95],"feature":[77,126],"projection":[78,127],"ensemble":[79,128],"learning":[80,129],"method,":[81],"\"SFPEL-LPI\",":[82],"First,":[87],"SFPEL-LPI":[88,98,117,134,146],"extracts":[89],"features.":[96],"Second,":[97],"calculates":[99],"lncRNA-lncRNA":[101],"similarities":[102,105,120],"protein-protein":[104],"by":[106,171],"using":[107],"sequences,":[109],"sequences":[111],"Then,":[116],"combines":[118],"with":[124],"a":[125,176],"frame.":[130],"experiments,":[133],"accurately":[135],"predicts":[136],"associations":[138],"outperforms":[140],"other":[141],"state-of-the-art":[142],"methods.":[143],"More":[144],"importantly,":[145],"can":[147,162],"be":[148],"applied":[149],"proteins).":[154],"The":[155],"case":[156],"studies":[157],"demonstrate":[158],"that":[159],"our":[160],"method":[161],"find":[163],"out":[164],"novel":[165],"confirmed":[170],"literature.":[172],"Finally,":[173],"construct":[175],"user-friendly":[177],"web":[178],"server,":[179],"at":[181],"http://www.bioinfotech.cn/SFPEL-LPI/.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":39},{"year":2019,"cited_by_count":28}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
