{"id":"https://openalex.org/W2949217284","doi":"https://doi.org/10.1371/journal.pcbi.1006530","title":"Host contact dynamics shapes richness and dominance of pathogen strains","display_name":"Host contact dynamics shapes richness and dominance of pathogen strains","publication_year":2019,"publication_date":"2019-05-21","ids":{"openalex":"https://openalex.org/W2949217284","doi":"https://doi.org/10.1371/journal.pcbi.1006530","mag":"2949217284","pmid":"https://pubmed.ncbi.nlm.nih.gov/31112541"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006530","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006530","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006530&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006530&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077261712","display_name":"Francesco Pinotti","orcid":"https://orcid.org/0000-0003-1953-2106"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210133907","display_name":"Institut Pierre Louis d\u2018\u00c9pid\u00e9miologie et de Sant\u00e9 Publique","ror":"https://ror.org/02qqh1125","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Francesco Pinotti","raw_affiliation_strings":["INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d'\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d\u2019\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d'\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]},{"raw_affiliation_string":"INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d\u2019\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","institution_ids":["https://openalex.org/I4210133907","https://openalex.org/I154526488","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101647300","display_name":"\u00c9ric Fleury","orcid":"https://orcid.org/0000-0003-2725-2606"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"\u00c9ric Fleury","raw_affiliation_strings":["INRIA, Paris, France"],"affiliations":[{"raw_affiliation_string":"INRIA, Paris, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068874661","display_name":"Didier Guillemot","orcid":"https://orcid.org/0000-0002-8497-1765"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I195731000","display_name":"Universit\u00e9 de Versailles Saint-Quentin-en-Yvelines","ror":"https://ror.org/03mkjjy25","country_code":"FR","type":"education","lineage":["https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Didier Guillemot","raw_affiliation_strings":["Inserm, UVSQ, Institut Pasteur, Universit\u00e9 Paris-Saclay, Biostatistics, Biomathematics, Pharmacoepidemiology and Infectious Diseases (B2PHI), Paris, France"],"affiliations":[{"raw_affiliation_string":"Inserm, UVSQ, Institut Pasteur, Universit\u00e9 Paris-Saclay, Biostatistics, Biomathematics, Pharmacoepidemiology and Infectious Diseases (B2PHI), Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I157536573","https://openalex.org/I277688954","https://openalex.org/I195731000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000035181","display_name":"Pierre\u2010Yves Bo\u00eblle","orcid":"https://orcid.org/0000-0002-5367-8232"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210133907","display_name":"Institut Pierre Louis d\u2018\u00c9pid\u00e9miologie et de Sant\u00e9 Publique","ror":"https://ror.org/02qqh1125","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre-Yves B\u00f6elle","raw_affiliation_strings":["INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d'\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d\u2019\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d'\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]},{"raw_affiliation_string":"INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d\u2019\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","institution_ids":["https://openalex.org/I4210133907","https://openalex.org/I154526488","https://openalex.org/I39804081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014048759","display_name":"Chiara Poletto","orcid":"https://orcid.org/0000-0002-4051-1716"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210133907","display_name":"Institut Pierre Louis d\u2018\u00c9pid\u00e9miologie et de Sant\u00e9 Publique","ror":"https://ror.org/02qqh1125","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Chiara Poletto","raw_affiliation_strings":["INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d'\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d\u2019\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d'\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"]},{"raw_affiliation_string":"INSERM, Sorbonne Universit\u00e9, Institut Pierre Louis d\u2019\u00c9pid\u00e9miologie et de Sant\u00e9 Publique (IPLESP), 75012 Paris, France","institution_ids":["https://openalex.org/I4210133907","https://openalex.org/I154526488","https://openalex.org/I39804081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5014048759"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210133907"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.9677,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.86859806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"5","first_page":"e1006530","last_page":"e1006530"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7479068040847778},{"id":"https://openalex.org/keywords/species-richness","display_name":"Species richness","score":0.6596161127090454},{"id":"https://openalex.org/keywords/dominance","display_name":"Dominance (genetics)","score":0.6554378867149353},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5491273403167725},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5360977649688721},{"id":"https://openalex.org/keywords/carriage","display_name":"Carriage","score":0.5047451257705688},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.46634429693222046},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4465409219264984},{"id":"https://openalex.org/keywords/competitive-exclusion","display_name":"Competitive exclusion","score":0.4244292378425598},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3514045178890228},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1453840136528015},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.11863595247268677},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.09381082653999329}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7479068040847778},{"id":"https://openalex.org/C53565203","wikidata":"https://www.wikidata.org/wiki/Q17146659","display_name":"Species richness","level":2,"score":0.6596161127090454},{"id":"https://openalex.org/C151913843","wikidata":"https://www.wikidata.org/wiki/Q3454555","display_name":"Dominance (genetics)","level":3,"score":0.6554378867149353},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5491273403167725},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5360977649688721},{"id":"https://openalex.org/C32762888","wikidata":"https://www.wikidata.org/wiki/Q235356","display_name":"Carriage","level":2,"score":0.5047451257705688},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.46634429693222046},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4465409219264984},{"id":"https://openalex.org/C2992687717","wikidata":"https://www.wikidata.org/wiki/Q1331830","display_name":"Competitive exclusion","level":3,"score":0.4244292378425598},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3514045178890228},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1453840136528015},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11863595247268677},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.09381082653999329},{"id":"https://openalex.org/C91306197","wikidata":"https://www.wikidata.org/wiki/Q45767","display_name":"Competition (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004198","descriptor_name":"Disease Susceptibility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004198","descriptor_name":"Disease Susceptibility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004198","descriptor_name":"Disease Susceptibility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006790","descriptor_name":"Host-Parasite Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006790","descriptor_name":"Host-Parasite Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006790","descriptor_name":"Host-Parasite Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018562","descriptor_name":"Disease Transmission, Infectious","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018562","descriptor_name":"Disease Transmission, Infectious","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018562","descriptor_name":"Disease Transmission, Infectious","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1006530","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006530","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006530&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:31112541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31112541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:inserm-02153754v1","is_oa":true,"landing_page_url":"https://inserm.hal.science/inserm-02153754","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2019, 15 (5), pp.e1006530. &#x27E8;10.1371/journal.pcbi.1006530&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:855296a2f3fc44018b8ae7170b058a7b","is_oa":true,"landing_page_url":"https://doaj.org/article/855296a2f3fc44018b8ae7170b058a7b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 5, p e1006530 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5543178","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6546247","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/8161580","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Host_contact_dynamics_shapes_richness_and_dominance_of_pathogen_strains/8161580","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:www.research.unipd.it:11577/3487121","is_oa":true,"landing_page_url":"https://hdl.handle.net/11577/3487121","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006530","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006530","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006530&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.7300000190734863,"display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949217284.pdf"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W230980609","https://openalex.org/W1557605126","https://openalex.org/W1595124364","https://openalex.org/W1790126089","https://openalex.org/W1790933236","https://openalex.org/W1878853999","https://openalex.org/W1889156735","https://openalex.org/W1963905090","https://openalex.org/W1966221290","https://openalex.org/W1967608252","https://openalex.org/W1974918617","https://openalex.org/W1993099985","https://openalex.org/W1994682066","https://openalex.org/W1999277453","https://openalex.org/W1999399962","https://openalex.org/W2001657177","https://openalex.org/W2010965902","https://openalex.org/W2016674662","https://openalex.org/W2025029849","https://openalex.org/W2027594689","https://openalex.org/W2039611235","https://openalex.org/W2054476679","https://openalex.org/W2057910559","https://openalex.org/W2060421086","https://openalex.org/W2063558597","https://openalex.org/W2082994295","https://openalex.org/W2083485334","https://openalex.org/W2083880291","https://openalex.org/W2092271770","https://openalex.org/W2094128465","https://openalex.org/W2096296558","https://openalex.org/W2096714129","https://openalex.org/W2100000268","https://openalex.org/W2100741829","https://openalex.org/W2104122491","https://openalex.org/W2107496197","https://openalex.org/W2110143693","https://openalex.org/W2114082014","https://openalex.org/W2117555834","https://openalex.org/W2122683371","https://openalex.org/W2129939726","https://openalex.org/W2131499531","https://openalex.org/W2134376445","https://openalex.org/W2135891608","https://openalex.org/W2143605924","https://openalex.org/W2145030161","https://openalex.org/W2150562212","https://openalex.org/W2150587298","https://openalex.org/W2151150074","https://openalex.org/W2152527500","https://openalex.org/W2153336132","https://openalex.org/W2165057663","https://openalex.org/W2166022262","https://openalex.org/W2167793690","https://openalex.org/W2168613507","https://openalex.org/W2169483370","https://openalex.org/W2209770894","https://openalex.org/W2314043858","https://openalex.org/W2346352892","https://openalex.org/W2538761093","https://openalex.org/W2587447875","https://openalex.org/W2604612116","https://openalex.org/W2620564323","https://openalex.org/W2727372147","https://openalex.org/W2747297304","https://openalex.org/W2771011086","https://openalex.org/W2783997483","https://openalex.org/W2786410925","https://openalex.org/W2798920869","https://openalex.org/W2803317181","https://openalex.org/W2952492141","https://openalex.org/W2964065783","https://openalex.org/W3037819556","https://openalex.org/W3102498351","https://openalex.org/W3104555650","https://openalex.org/W3106358012","https://openalex.org/W3106390811","https://openalex.org/W4251085314","https://openalex.org/W4302331569","https://openalex.org/W6642920389"],"related_works":["https://openalex.org/W4244359829","https://openalex.org/W2022250864","https://openalex.org/W4385061579","https://openalex.org/W1855418621","https://openalex.org/W2809130848","https://openalex.org/W1968126718","https://openalex.org/W195123958","https://openalex.org/W2055126334","https://openalex.org/W3148060908","https://openalex.org/W2806676568"],"abstract_inverted_index":{"The":[0],"interaction":[1],"among":[2,123,139,148],"multiple":[3],"microbial":[4],"strains":[5,27,75,138,159],"affects":[6],"the":[7,13,30,119,135,156,166,170,184,219,234],"spread":[8,185],"of":[9,15,33,40,60,66,73,86,98,108,121,137,158,186,218,237,247],"infectious":[10],"diseases":[11],"and":[12,44,54,80,100,130,164,198,209,230,239],"efficacy":[14],"interventions.":[16],"Genomic":[17],"tools":[18],"have":[19],"made":[20],"it":[21,57],"increasingly":[22],"easy":[23],"to":[24,89,127,169],"observe":[25],"pathogenic":[26,172],"diversity,":[28],"but":[29],"best":[31],"interpretation":[32],"such":[34],"diversity":[35,99,129],"has":[36],"remained":[37],"difficult":[38],"because":[39],"relationships":[41],"with":[42,161],"host":[43],"environmental":[45],"factors.":[46],"Here,":[47],"we":[48],"focus":[49],"on":[50,82],"host-to-host":[51],"contact":[52],"behavior":[53],"study":[55],"how":[56,228],"changes":[58],"populations":[59,104],"pathogens":[61,238],"in":[62,102,114,118,189,222],"a":[63,71,83,90,106,190,215],"minimal":[64],"model":[65],"multi-strain":[67],"interaction.":[68],"We":[69,94,153,204],"simulated":[70],"population":[72,235],"identical":[74],"competing":[76],"by":[77,133],"mutual":[78],"exclusion":[79],"spreading":[81],"dynamical":[84],"network":[85,207,231],"hosts":[87,124,141,149,162],"according":[88],"stochastic":[91],"susceptible-infectious-susceptible":[92],"model.":[93],"computed":[95],"ecological":[96],"indicators":[97],"dominance":[101,132],"strain":[103,151,199,223],"for":[105,214],"collection":[107],"networks":[109],"illustrating":[110],"various":[111],"properties":[112,211],"found":[113,126,154,205],"real-world":[115],"examples.":[116],"Heterogeneities":[117],"number":[120],"contacts":[122],"were":[125,180,201],"reduce":[128],"increase":[131],"making":[134],"repartition":[136],"infected":[140],"more":[142],"uneven,":[143],"while":[144],"strong":[145],"community":[146],"structure":[147,232],"increased":[150],"diversity.":[152,224],"that":[155,206],"introduction":[157],"associated":[160],"entering":[163],"leaving":[165],"system":[167],"led":[168],"highest":[171],"richness":[173],"at":[174],"intermediate":[175],"turnover":[176],"levels.":[177],"These":[178,225],"results":[179,226],"finally":[181],"illustrated":[182],"using":[183],"Staphylococcus":[187],"aureus":[188],"long-term":[191],"health-care":[192],"facility":[193],"where":[194],"close":[195],"proximity":[196],"interactions":[197],"carriage":[200],"collected":[202],"simultaneously.":[203],"structural":[208],"temporal":[210],"could":[212],"account":[213],"large":[216],"part":[217],"variability":[220],"observed":[221],"show":[227],"stochasticity":[229],"affect":[233],"ecology":[236],"warn":[240],"against":[241],"interpreting":[242],"observations":[243],"as":[244],"unambiguous":[245],"evidence":[246],"epidemiological":[248],"differences":[249],"between":[250],"strains.":[251]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2025-10-10T00:00:00"}
