{"id":"https://openalex.org/W2902320679","doi":"https://doi.org/10.1371/journal.pcbi.1006514","title":"RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks","display_name":"RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks","publication_year":2018,"publication_date":"2018-11-27","ids":{"openalex":"https://openalex.org/W2902320679","doi":"https://doi.org/10.1371/journal.pcbi.1006514","mag":"2902320679","pmid":"https://pubmed.ncbi.nlm.nih.gov/30481171"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006514","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006514","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006514&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006514&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100361773","display_name":"Jun Li","orcid":"https://orcid.org/0000-0002-1171-7141"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Li","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077817294","display_name":"Wei Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zhu","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109012686","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0001-8357-7814"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]},{"raw_affiliation_string":"State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058504410","display_name":"Wenfei Li","orcid":"https://orcid.org/0000-0003-2679-4075"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenfei Li","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037666565","display_name":"Sheng Gong","orcid":"https://orcid.org/0000-0002-7457-7959"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Gong","raw_affiliation_strings":["Department of Pharmaceutics, Nanjing General Hospital, Nanjing University Medical School, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutics, Nanjing General Hospital, Nanjing University Medical School, Nanjing, China","institution_ids":["https://openalex.org/I83519826","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038902147","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0003-2338-0395"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0003-2338-0395","affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]},{"raw_affiliation_string":"State Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I881766915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100391662","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0001-5441-0302"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Wang","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5038902147","https://openalex.org/A5100391662"],"corresponding_institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.7627,"has_fulltext":true,"cited_by_count":87,"citation_normalized_percentile":{"value":0.85556232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"14","issue":"11","first_page":"e1006514","last_page":"e1006514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7258217334747314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6793407201766968},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5700169801712036},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.507698655128479},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.49458786845207214},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.46381232142448425},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4582878649234772},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4358011484146118},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.41488727927207947},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3913082778453827},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3852219581604004},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3582914471626282},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2086520493030548},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.16017979383468628},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12785550951957703}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7258217334747314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6793407201766968},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5700169801712036},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.507698655128479},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.49458786845207214},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.46381232142448425},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4582878649234772},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4358011484146118},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.41488727927207947},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3913082778453827},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3852219581604004},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3582914471626282},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2086520493030548},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.16017979383468628},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12785550951957703},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006358","descriptor_name":"Hot Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006358","descriptor_name":"Hot Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006358","descriptor_name":"Hot Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006358","descriptor_name":"Hot Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1006514","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006514","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006514&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30481171","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30481171","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1006514","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006514","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:5dcecb73f3ef430a848cb18c503a92d6","is_oa":true,"landing_page_url":"https://doaj.org/article/5dcecb73f3ef430a848cb18c503a92d6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 14, Iss 11, p e1006514 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5249749","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6258470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/7388831","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/RNA3DCNN_Local_and_global_quality_assessments_of_RNA_3D_structures_using_3D_deep_convolutional_neural_networks/7388831","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006514","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006514","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006514&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G222085685","display_name":null,"funder_award_id":"31671026","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4269988857","display_name":"\u67d4\u6027\u94fe\u63a5\u591a\u57df\u86cb\u767d\u522b\u6784\u8fd0\u52a8\u7684\u591a\u5c3a\u5ea6\u7406\u8bba\u6a21\u62df\u7814\u7a76","funder_award_id":"11574132","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4965133097","display_name":null,"funder_award_id":"11774157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7532705565","display_name":null,"funder_award_id":"11334004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8243221411","display_name":null,"funder_award_id":"11774158","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324852","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902320679.pdf","grobid_xml":"https://content.openalex.org/works/W2902320679.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W160347429","https://openalex.org/W391985582","https://openalex.org/W1019830208","https://openalex.org/W1686810756","https://openalex.org/W1966343698","https://openalex.org/W1976792261","https://openalex.org/W1976961172","https://openalex.org/W1988409793","https://openalex.org/W1995164506","https://openalex.org/W2012412337","https://openalex.org/W2017838368","https://openalex.org/W2021239285","https://openalex.org/W2032913870","https://openalex.org/W2053150979","https://openalex.org/W2058615001","https://openalex.org/W2059099058","https://openalex.org/W2068205741","https://openalex.org/W2074253966","https://openalex.org/W2074619174","https://openalex.org/W2087377443","https://openalex.org/W2088338354","https://openalex.org/W2093404711","https://openalex.org/W2099087808","https://openalex.org/W2103589755","https://openalex.org/W2103894153","https://openalex.org/W2105912570","https://openalex.org/W2106434056","https://openalex.org/W2107334084","https://openalex.org/W2108688393","https://openalex.org/W2109683504","https://openalex.org/W2121104379","https://openalex.org/W2131169717","https://openalex.org/W2135300233","https://openalex.org/W2137427033","https://openalex.org/W2145477667","https://openalex.org/W2157151871","https://openalex.org/W2167564948","https://openalex.org/W2198606573","https://openalex.org/W2212215912","https://openalex.org/W2214665483","https://openalex.org/W2257979135","https://openalex.org/W2337082154","https://openalex.org/W2419175238","https://openalex.org/W2531147647","https://openalex.org/W2534288757","https://openalex.org/W2557283755","https://openalex.org/W2580963738","https://openalex.org/W2583907533","https://openalex.org/W2612940361","https://openalex.org/W2617750324","https://openalex.org/W2625768267","https://openalex.org/W2754256290","https://openalex.org/W2766447205","https://openalex.org/W2768096340","https://openalex.org/W2776155488","https://openalex.org/W2781821160","https://openalex.org/W2784883284","https://openalex.org/W2962851944","https://openalex.org/W3104705366","https://openalex.org/W3105054720","https://openalex.org/W3106154480","https://openalex.org/W6653361723"],"related_works":["https://openalex.org/W4391621807","https://openalex.org/W2393870460","https://openalex.org/W4321487865","https://openalex.org/W4313906399","https://openalex.org/W4391621790","https://openalex.org/W2254578859","https://openalex.org/W4284894156","https://openalex.org/W2161803855","https://openalex.org/W4239306820","https://openalex.org/W4391266461"],"abstract_inverted_index":{"Quality":[0],"assessment":[1],"is":[2,206,215],"essential":[3],"for":[4,87,167,208,217],"the":[5,41,48,51,66,73,98,146,185,213,226,251,258],"computational":[6],"prediction":[7],"and":[8,23,31,56,145,162,184,190,201,231,256],"design":[9],"of":[10,50,75,97,126,171,228,242],"RNA":[11,33,88,107],"tertiary":[12],"structures.":[13,34],"To":[14],"date,":[15],"several":[16],"knowledge-based":[17],"statistical":[18,68],"potentials":[19,37],"have":[20],"been":[21],"proposed":[22],"proved":[24],"to":[25,250,267],"be":[26,274],"effective":[27],"in":[28,47],"identifying":[29],"native":[30],"near-native":[32,210],"All":[35],"these":[36],"are":[38],"based":[39],"on":[40,257],"inverse":[42],"Boltzmann":[43],"formula,":[44],"while":[45,212],"differing":[46],"choice":[49],"geometrical":[52],"descriptor,":[53],"reference":[54],"state,":[55],"training":[57,127,176,182,192],"dataset.":[58],"Via":[59],"an":[60],"approach":[61,82],"that":[62],"diverges":[63],"completely":[64],"from":[65,276],"conventional":[67],"potentials,":[69],"our":[70,116,229,246,262],"work":[71],"explored":[72],"power":[74],"a":[76,84,93,168],"3D":[77,89,94],"convolutional":[78],"neural":[79,197],"network":[80],"(CNN)-based":[81],"as":[83,100],"quality":[85,122],"evaluator":[86],"structures,":[90,211],"which":[91],"used":[92],"grid":[95],"representation":[96],"structure":[99,158],"input":[101],"without":[102],"extracting":[103],"features":[104],"manually.":[105],"The":[106,131,204],"structures":[108,219],"were":[109,129,165],"evaluated":[110],"by":[111,139,154],"examining":[112],"each":[113],"nucleotide,":[114],"so":[115],"method":[117,230,247,263,272],"can":[118,273],"also":[119],"provide":[120],"local":[121],"assessment.":[123],"Two":[124],"sets":[125],"samples":[128,137,152,183],"built.":[130],"first":[132],"one":[133,148],"included":[134,149],"1":[135,150],"million":[136,151],"generated":[138,153],"high-temperature":[140],"molecular":[141],"dynamics":[142],"(MD)":[143],"simulations":[144],"second":[147],"Monte":[155],"Carlo":[156],"(MC)":[157],"prediction.":[159],"Both":[160],"MD":[161,181,189],"MC":[163,191],"procedures":[164],"performed":[166,248],"non-redundant":[169],"set":[170],"414":[172],"RNAs.":[173],"For":[174],"two":[175,196,241],"datasets":[177],"(one":[178],"including":[179,187],"only":[180],"other":[186,236,268],"both":[188],"samples),":[193],"we":[194],"trained":[195],"networks,":[198],"named":[199],"RNA3DCNN_MD":[200],"RNA3DCNN_MDMC,":[202],"respectively.":[203],"former":[205],"suitable":[207,216],"assessing":[209,218],"latter":[214],"covering":[220],"large":[221],"structural":[222],"space.":[223],"We":[224],"tested":[225],"performance":[227],"made":[232],"comparisons":[233],"with":[234],"four":[235],"traditional":[237,253],"scoring":[238,254,269],"functions.":[239,270],"On":[240],"three":[243],"test":[244,260],"datasets,":[245],"similarly":[249],"state-of-the-art":[252],"function,":[255],"third":[259],"dataset,":[261],"was":[264],"far":[265],"superior":[266],"Our":[271],"downloaded":[275],"https://github.com/lijunRNA/RNA3DCNN.":[277]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":8}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
