{"id":"https://openalex.org/W2900167333","doi":"https://doi.org/10.1371/journal.pcbi.1006483","title":"A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs)","display_name":"A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs)","publication_year":2018,"publication_date":"2018-11-08","ids":{"openalex":"https://openalex.org/W2900167333","doi":"https://doi.org/10.1371/journal.pcbi.1006483","mag":"2900167333","pmid":"https://pubmed.ncbi.nlm.nih.gov/30408032"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006483","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006483","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006483&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006483&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052764114","display_name":"Christiane Ehrt","orcid":"https://orcid.org/0000-0003-1428-0042"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christiane Ehrt","raw_affiliation_strings":["Faculty of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1428-0042","affiliations":[{"raw_affiliation_string":"Faculty of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027412968","display_name":"Tobias Brinkjost","orcid":"https://orcid.org/0000-0002-6272-4456"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Tobias Brinkjost","raw_affiliation_strings":["Department of Computer Science, TU Dortmund University, Dortmund, Germany","Faculty of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany"],"raw_orcid":"https://orcid.org/0000-0002-6272-4456","affiliations":[{"raw_affiliation_string":"Department of Computer Science, TU Dortmund University, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"Faculty of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031181726","display_name":"Oliver Koch","orcid":null},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Oliver Koch","raw_affiliation_strings":["Faculty of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9228-217X","affiliations":[{"raw_affiliation_string":"Faculty of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5027412968","https://openalex.org/A5031181726","https://openalex.org/A5052764114"],"corresponding_institution_ids":["https://openalex.org/I200332995"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":5.3741,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.96479772,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"14","issue":"11","first_page":"e1006483","last_page":"e1006483"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6617798805236816},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.507209300994873},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4281400144100189},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3559185266494751},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21650534868240356},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.09134119749069214},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08330661058425903}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6617798805236816},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.507209300994873},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4281400144100189},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3559185266494751},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21650534868240356},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.09134119749069214},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08330661058425903}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1006483","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006483","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006483&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30408032","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30408032","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:495714a9912f41e190ce321792aa1c36","is_oa":true,"landing_page_url":"https://doaj.org/article/495714a9912f41e190ce321792aa1c36","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 14, Iss 11, p e1006483 (2018)","raw_type":"article"},{"id":"pmh:oai:eldorado.tu-dortmund.de:2003/38106","is_oa":true,"landing_page_url":"http://hdl.handle.net/2003/38106","pdf_url":null,"source":{"id":"https://openalex.org/S4377196631","display_name":"Eldorado - Repository of the TU Dortmund (TU Dortmund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200332995","host_organization_name":"TU Dortmund University","host_organization_lineage":["https://openalex.org/I200332995"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doc-type:Text"},{"id":"pmh:oai:europepmc.org:5202295","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6224041","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/7315790","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/A_benchmark_driven_guide_to_binding_site_comparison_An_exhaustive_evaluation_using_tailor-made_data_sets_ProSPECCTs_/7315790","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:6224041","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6224041","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"doi:10.17877/de290r-20087","is_oa":true,"landing_page_url":"https://doi.org/10.17877/de290r-20087","pdf_url":null,"source":{"id":"https://openalex.org/S4306400811","display_name":"Technische Universit\u00e4t Dortmund Eldorado (Technische Universit\u00e4t Dortmund)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210148506","host_organization_name":"Erich-Brost-Institut","host_organization_lineage":["https://openalex.org/I4210148506"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006483","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006483","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006483&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G1614880570","display_name":null,"funder_award_id":"1316053","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5445909752","display_name":null,"funder_award_id":"BMBF 1316053","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320309608","display_name":"Verband der Chemischen Industrie","ror":"https://ror.org/00kvk1853"},{"id":"https://openalex.org/F4320314239","display_name":"Netherlands eScience Center","ror":"https://ror.org/00rbjv475"},{"id":"https://openalex.org/F4320318613","display_name":"Fonds der Chemischen Industrie","ror":null},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320328795","display_name":"Collaborative Innovation Center of Chemistry for Energy Materials","ror":"https://ror.org/05fdv7d34"},{"id":"https://openalex.org/F4320329559","display_name":"Technische Universit\u00e4t Dortmund","ror":"https://ror.org/01k97gp34"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2900167333.pdf","grobid_xml":"https://content.openalex.org/works/W2900167333.grobid-xml"},"referenced_works_count":118,"referenced_works":["https://openalex.org/W853235284","https://openalex.org/W1066550643","https://openalex.org/W1535583521","https://openalex.org/W1572551883","https://openalex.org/W1873112065","https://openalex.org/W1962922160","https://openalex.org/W1970799005","https://openalex.org/W1971213794","https://openalex.org/W1973462822","https://openalex.org/W1975459052","https://openalex.org/W1979914800","https://openalex.org/W1982168039","https://openalex.org/W1986191025","https://openalex.org/W1987847248","https://openalex.org/W1992426410","https://openalex.org/W1993976538","https://openalex.org/W1997655258","https://openalex.org/W2002278080","https://openalex.org/W2006436808","https://openalex.org/W2006617902","https://openalex.org/W2006995201","https://openalex.org/W2011953761","https://openalex.org/W2013701719","https://openalex.org/W2014234027","https://openalex.org/W2015147525","https://openalex.org/W2019450130","https://openalex.org/W2019523557","https://openalex.org/W2019971393","https://openalex.org/W2020118174","https://openalex.org/W2022849573","https://openalex.org/W2024005354","https://openalex.org/W2027323362","https://openalex.org/W2031194866","https://openalex.org/W2033647101","https://openalex.org/W2039636022","https://openalex.org/W2040595595","https://openalex.org/W2041877730","https://openalex.org/W2043583897","https://openalex.org/W2050081822","https://openalex.org/W2050918141","https://openalex.org/W2051783184","https://openalex.org/W2053658804","https://openalex.org/W2054627667","https://openalex.org/W2056399835","https://openalex.org/W2059006070","https://openalex.org/W2060109055","https://openalex.org/W2062989416","https://openalex.org/W2063011021","https://openalex.org/W2068086934","https://openalex.org/W2071739012","https://openalex.org/W2072953968","https://openalex.org/W2074370114","https://openalex.org/W2074473216","https://openalex.org/W2077074520","https://openalex.org/W2084099736","https://openalex.org/W2085833518","https://openalex.org/W2086380285","https://openalex.org/W2089186739","https://openalex.org/W2090126421","https://openalex.org/W2095898148","https://openalex.org/W2096739999","https://openalex.org/W2102076040","https://openalex.org/W2102245393","https://openalex.org/W2104812418","https://openalex.org/W2108921801","https://openalex.org/W2111762125","https://openalex.org/W2120905579","https://openalex.org/W2124351063","https://openalex.org/W2125200271","https://openalex.org/W2127067710","https://openalex.org/W2127866370","https://openalex.org/W2130479394","https://openalex.org/W2132629607","https://openalex.org/W2133035849","https://openalex.org/W2133458557","https://openalex.org/W2134904052","https://openalex.org/W2138770756","https://openalex.org/W2139362074","https://openalex.org/W2146940292","https://openalex.org/W2150065588","https://openalex.org/W2152575748","https://openalex.org/W2153153865","https://openalex.org/W2153251136","https://openalex.org/W2159184004","https://openalex.org/W2164088236","https://openalex.org/W2165046172","https://openalex.org/W2165509651","https://openalex.org/W2165925807","https://openalex.org/W2233361891","https://openalex.org/W2238707319","https://openalex.org/W2302424742","https://openalex.org/W2319902168","https://openalex.org/W2322633051","https://openalex.org/W2327079070","https://openalex.org/W2328176404","https://openalex.org/W2342643914","https://openalex.org/W2343614482","https://openalex.org/W2395911948","https://openalex.org/W2398198205","https://openalex.org/W2411165395","https://openalex.org/W2460730303","https://openalex.org/W2462960130","https://openalex.org/W2489106039","https://openalex.org/W2499722100","https://openalex.org/W2513297126","https://openalex.org/W2536259549","https://openalex.org/W2558999090","https://openalex.org/W2560290304","https://openalex.org/W2564843018","https://openalex.org/W2582341846","https://openalex.org/W2582743722","https://openalex.org/W2592476227","https://openalex.org/W4210309881","https://openalex.org/W4237017626","https://openalex.org/W4240082606","https://openalex.org/W4242279097","https://openalex.org/W4285241282","https://openalex.org/W6699732133"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908"],"abstract_inverted_index":{"The":[0,28,168],"automated":[1],"comparison":[2,53,82,101],"of":[3,17,36,64,77,98,115,133,139,150,162,173,180,188],"protein-ligand":[4],"binding":[5,41,78,99,134],"sites":[6,42],"provides":[7],"useful":[8],"insights":[9],"into":[10],"yet":[11],"unexplored":[12],"site":[13,79,100,135],"similarities.":[14],"Various":[15],"stages":[16],"computational":[18],"and":[19,33,84,96,160,164],"chemical":[20],"biology":[21],"research":[22],"can":[23],"benefit":[24],"from":[25],"this":[26,88],"knowledge.":[27],"search":[29],"for":[30,47,67,118,147,157],"putative":[31],"off-targets":[32],"the":[34,62,74,108,113,148,158,171,178,186],"establishment":[35],"polypharmacological":[37],"effects":[38],"by":[39],"comparing":[40],"led":[43],"to":[44,60,93,111,127,176],"promising":[45],"results":[46,169],"numerous":[48],"projects.":[49],"Although":[50],"many":[51],"cavity":[52],"methods":[54],"are":[55],"available,":[56],"a":[57,65,68,181,189],"comprehensive":[58],"analysis":[59],"guide":[61],"choice":[63,179],"tool":[66],"specific":[69,190],"application":[70],"is":[71,107,154],"wanting.":[72],"Moreover,":[73],"broad":[75],"variety":[76],"modeling":[80],"approaches,":[81],"algorithms,":[83],"scoring":[85],"metrics":[86],"impedes":[87],"choice.":[89],"Herein,":[90],"we":[91],"aim":[92],"elucidate":[94],"strengths":[95],"weaknesses":[97],"methodologies.":[102],"A":[103],"detailed":[104],"benchmark":[105,142],"study":[106],"only":[109],"possibility":[110],"rationalize":[112],"selection":[114],"appropriate":[116],"tools":[117],"different":[119],"scenarios.":[120],"Specific":[121],"evaluation":[122,159],"data":[123],"sets":[124,143],"were":[125],"developed":[126],"shed":[128],"light":[129],"on":[130],"multiple":[131],"aspects":[132],"comparison.":[136],"An":[137],"assembly":[138],"all":[140],"applied":[141],"(ProSPECCTs-Protein":[144],"Site":[145],"Pairs":[146],"Evaluation":[149],"Cavity":[151],"Comparison":[152],"Tools)":[153],"made":[155],"available":[156],"optimization":[161],"further":[163],"still":[165],"emerging":[166],"methods.":[167],"indicate":[170],"importance":[172],"such":[174],"analyses":[175],"facilitate":[177],"methodology":[182],"that":[183],"complies":[184],"with":[185],"requirements":[187],"scientific":[191],"challenge.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":10}],"updated_date":"2026-05-30T09:04:40.226872","created_date":"2025-10-10T00:00:00"}
