{"id":"https://openalex.org/W2779419474","doi":"https://doi.org/10.1371/journal.pcbi.1006343","title":"PyPhi: A toolbox for integrated information theory","display_name":"PyPhi: A toolbox for integrated information theory","publication_year":2018,"publication_date":"2018-07-26","ids":{"openalex":"https://openalex.org/W2779419474","doi":"https://doi.org/10.1371/journal.pcbi.1006343","mag":"2779419474","pmid":"https://pubmed.ncbi.nlm.nih.gov/30048445"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006343","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006343","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006343&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006343&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008945327","display_name":"William G. P. Mayner","orcid":"https://orcid.org/0000-0002-9737-6260"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William G. P. Mayner","raw_affiliation_strings":["Neuroscience Training Program, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Neuroscience Training Program, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9737-6260","affiliations":[{"raw_affiliation_string":"Neuroscience Training Program, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Neuroscience Training Program, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079199987","display_name":"William Marshall","orcid":"https://orcid.org/0000-0002-4779-6734"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Marshall","raw_affiliation_strings":["Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4779-6734","affiliations":[{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088756569","display_name":"Larissa Albantakis","orcid":"https://orcid.org/0000-0003-1000-9917"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Larissa Albantakis","raw_affiliation_strings":["Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082866185","display_name":"Graham Findlay","orcid":"https://orcid.org/0000-0002-0387-1528"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graham Findlay","raw_affiliation_strings":["Neuroscience Training Program, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Neuroscience Training Program, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neuroscience Training Program, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Neuroscience Training Program, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002895803","display_name":"Robert Marchman","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Marchman","raw_affiliation_strings":["Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001381023","display_name":"Giulio Tononi","orcid":"https://orcid.org/0000-0002-3892-4087"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Giulio Tononi","raw_affiliation_strings":["Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-3892-4087","affiliations":[{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Psychiatry Department, University of Wisconsin\u2013Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001381023","https://openalex.org/A5008945327"],"corresponding_institution_ids":["https://openalex.org/I135310074"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.2171,"has_fulltext":true,"cited_by_count":126,"citation_normalized_percentile":{"value":0.96944402,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"14","issue":"7","first_page":"e1006343","last_page":"e1006343"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11520","display_name":"Advanced Thermodynamics and Statistical Mechanics","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9036108255386353},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7976833581924438},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6788669228553772},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6609703898429871},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.5897731184959412},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5759169459342957},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5749788880348206},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4991886615753174},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4690191149711609},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4176866412162781},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4138322174549103},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35802704095840454}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9036108255386353},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7976833581924438},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6788669228553772},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6609703898429871},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.5897731184959412},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5759169459342957},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5749788880348206},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4991886615753174},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4690191149711609},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4176866412162781},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4138322174549103},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35802704095840454},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1006343","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006343","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006343&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30048445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30048445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:1712.09644","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1712.09644","pdf_url":"https://arxiv.org/pdf/1712.09644","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:5039894","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6080800","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1006343","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006343","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:bf9b998d3f074db59097928d0a3bd767","is_oa":true,"landing_page_url":"https://doaj.org/article/bf9b998d3f074db59097928d0a3bd767","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 14, Iss 7, p e1006343 (2018)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/6867011","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/PyPhi_A_toolbox_for_integrated_information_theory/6867011","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006343","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006343","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006343&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1794384875","display_name":null,"funder_award_id":"T32GM007507","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4137499221","display_name":"Neuroscience Training Program","funder_award_id":"5t32gm007507-37","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320327239","display_name":"Templeton World Charity Foundation","ror":"https://ror.org/00x0z1472"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2779419474.pdf","grobid_xml":"https://content.openalex.org/works/W2779419474.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1554794238","https://openalex.org/W1969469858","https://openalex.org/W2049846167","https://openalex.org/W2060841334","https://openalex.org/W2070484080","https://openalex.org/W2108714018","https://openalex.org/W2114900706","https://openalex.org/W2143891888","https://openalex.org/W2146292423","https://openalex.org/W2160448328","https://openalex.org/W2274969970","https://openalex.org/W2394834952","https://openalex.org/W2474388519","https://openalex.org/W2514120153","https://openalex.org/W2517431276","https://openalex.org/W2539033431","https://openalex.org/W2581823524","https://openalex.org/W2748980803","https://openalex.org/W2753865463","https://openalex.org/W2908619233"],"related_works":["https://openalex.org/W2549786917","https://openalex.org/W3204758414","https://openalex.org/W3200088983","https://openalex.org/W3034716491","https://openalex.org/W2243008534","https://openalex.org/W2561596083","https://openalex.org/W4240625990","https://openalex.org/W2990762041","https://openalex.org/W339959573","https://openalex.org/W135428843"],"abstract_inverted_index":{"Integrated":[0],"information":[1,65],"theory":[2],"provides":[3],"a":[4,14,21],"mathematical":[5],"framework":[6,28],"to":[7,49,174],"fully":[8],"characterize":[9],"the":[10,34,61,86,94,106,120,142,144,175],"cause-effect":[11,36],"structure":[12,37],"of":[13,38,42,60,63,85,96,105],"physical":[15],"system.":[16],"Here,":[17],"we":[18],"introduce":[19],"PyPhi,":[20],"Python":[22,132],"software":[23,46,176],"package":[24,117],"that":[25],"implements":[26],"this":[27],"for":[29],"causal":[30],"analysis":[31],"and":[32,67,76,89,101,109,127,139,154],"unfolds":[33],"full":[35],"discrete":[39],"dynamical":[40],"systems":[41,129],"binary":[43],"elements.":[44],"The":[45,161],"allows":[47],"users":[48],"easily":[50],"study":[51],"these":[52],"structures,":[53],"serves":[54],"as":[55],"an":[56,83,98],"up-to-date":[57],"reference":[58],"implementation":[59],"formalisms":[62],"integrated":[64],"theory,":[66],"has":[68],"been":[69],"applied":[70],"in":[71,93],"research":[72],"on":[73,125,149],"complexity,":[74],"emergence,":[75],"certain":[77],"biological":[78],"questions.":[79],"We":[80],"first":[81],"provide":[82],"overview":[84],"main":[87],"algorithm":[88],"demonstrate":[90],"PyPhi's":[91],"functionality":[92],"course":[95],"analyzing":[97],"example":[99],"system,":[100],"then":[102],"describe":[103],"details":[104],"algorithm's":[107],"design":[108],"implementation.":[110],"PyPhi":[111,136],"can":[112,165],"be":[113,166],"installed":[114],"with":[115,131],"Python's":[116],"manager":[118],"via":[119],"command":[121],"'pip":[122],"install":[123],"pyphi'":[124],"Linux":[126],"macOS":[128],"equipped":[130],"3.4":[133],"or":[134],"higher.":[135],"is":[137,147,157,177],"open-source":[138],"licensed":[140],"under":[141],"GPLv3;":[143],"source":[145],"code":[146],"hosted":[148],"GitHub":[150],"at":[151,159,168,179],"https://github.com/wmayner/pyphi.":[152],"Comprehensive":[153],"continually-updated":[155],"documentation":[156],"available":[158,178],"https://pyphi.readthedocs.io.":[160],"pyphi-users":[162],"mailing":[163],"list":[164],"joined":[167],"https://groups.google.com/forum/#!forum/pyphi-users.":[169],"A":[170],"web-based":[171],"graphical":[172],"interface":[173],"http://integratedinformationtheory.org/calculate.html.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":29},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
