{"id":"https://openalex.org/W2754509621","doi":"https://doi.org/10.1371/journal.pcbi.1006064","title":"Porcupine: A visual pipeline tool for neuroimaging analysis","display_name":"Porcupine: A visual pipeline tool for neuroimaging analysis","publication_year":2018,"publication_date":"2018-05-10","ids":{"openalex":"https://openalex.org/W2754509621","doi":"https://doi.org/10.1371/journal.pcbi.1006064","mag":"2754509621","pmid":"https://pubmed.ncbi.nlm.nih.gov/29746461"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006064","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006064","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006064&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006064&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025951691","display_name":"Tim van Mourik","orcid":"https://orcid.org/0000-0002-8155-8641"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Tim van Mourik","raw_affiliation_strings":["Radboud University Nijmegen, Donders Institute for Brain, Cognition and Behaviour, Kapittelweg, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Radboud University Nijmegen, Donders Institute for Brain, Cognition and Behaviour, Kapittelweg, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052088344","display_name":"Lukas Snoek","orcid":"https://orcid.org/0000-0001-8972-204X"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lukas Snoek","raw_affiliation_strings":["University of Amsterdam, Department of Brain & Cognition, Nieuwe Achtergracht, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Department of Brain & Cognition, Nieuwe Achtergracht, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017500558","display_name":"Tomas Knapen","orcid":"https://orcid.org/0000-0001-5863-8689"},"institutions":[{"id":"https://openalex.org/I4210153566","display_name":"Spinoza Centre for Neuroimaging","ror":"https://ror.org/05kgbsy64","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210153566"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Tomas Knapen","raw_affiliation_strings":["Cognitive Psychology & Institute for Brain & Behavior, Vd Boechorststraat, Amsterdam, The Netherlands","Spinoza Centre for Neuroimaging, Meibergdreef, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Cognitive Psychology & Institute for Brain & Behavior, Vd Boechorststraat, Amsterdam, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Spinoza Centre for Neuroimaging, Meibergdreef, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210153566"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035915110","display_name":"David G. Norris","orcid":"https://orcid.org/0000-0002-3699-6917"},"institutions":[{"id":"https://openalex.org/I127668822","display_name":"Erwin L. Hahn Institute for Magnetic Resonance Imaging","ror":"https://ror.org/00ns93f55","country_code":"DE","type":"facility","lineage":["https://openalex.org/I127668822"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["DE","NL"],"is_corresponding":false,"raw_author_name":"David G. Norris","raw_affiliation_strings":["Erwin L. Hahn Institute for Magnetic Resonance Imaging, Arendahls Wiese, Essen, Germany","Radboud University Nijmegen, Donders Institute for Brain, Cognition and Behaviour, Kapittelweg, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Erwin L. Hahn Institute for Magnetic Resonance Imaging, Arendahls Wiese, Essen, Germany","institution_ids":["https://openalex.org/I127668822"]},{"raw_affiliation_string":"Radboud University Nijmegen, Donders Institute for Brain, Cognition and Behaviour, Kapittelweg, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025951691"],"corresponding_institution_ids":["https://openalex.org/I145872427"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.7815,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.83600629,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"5","first_page":"e1006064","last_page":"e1006064"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8225489854812622},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6286901831626892},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6161250472068787},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5218033790588379},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5034694075584412},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.45696160197257996},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.43404799699783325},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4288971722126007},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4232370853424072},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.4134575128555298},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3551476001739502},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.30443453788757324}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8225489854812622},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6286901831626892},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6161250472068787},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5218033790588379},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5034694075584412},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.45696160197257996},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.43404799699783325},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4288971722126007},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4232370853424072},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.4134575128555298},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3551476001739502},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.30443453788757324},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":12,"locations":[{"id":"doi:10.1371/journal.pcbi.1006064","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006064","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006064&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:29746461","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29746461","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:knaw:oai:pure.knaw.nl:publications/c81ade3d-a4e8-458b-b6d7-f9ceb30b66de","is_oa":true,"landing_page_url":"https://pure.knaw.nl/portal/en/publications/c81ade3d-a4e8-458b-b6d7-f9ceb30b66de","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 14(5). Public Library of Science","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/ad2096da-160f-4714-b590-d13439029fe6","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/porcupine-a-visual-pipeline-tool-for-neuroimaging-analysis(ad2096da-160f-4714-b590-d13439029fe6).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"van Mourik, T, Snoek, L, Knapen, T & Norris, D G 2018, 'Porcupine: A visual pipeline tool for neuroimaging analysis', PLoS Computational Biology, vol. 14, no. 5, e1006064. https://doi.org/10.1371/journal.pcbi.1006064","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:36188ad3b4c842cc97747dad37ed15dc","is_oa":true,"landing_page_url":"https://doaj.org/article/36188ad3b4c842cc97747dad37ed15dc","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 14, Iss 5, p e1006064 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4935644","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5963801","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.knaw.nl:Publications/c81ade3d-a4e8-458b-b6d7-f9ceb30b66de","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401286","display_name":"KNAW research portal (Royal Academy of Art and Sciences (KNAW))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.knaw.nl:publications/c81ade3d-a4e8-458b-b6d7-f9ceb30b66de","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11755/c81ade3d-a4e8-458b-b6d7-f9ceb30b66de","pdf_url":null,"source":{"id":"https://openalex.org/S4306400439","display_name":"KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"van Mourik , T , Snoek , L , Knapen , T &amp; Norris , D G 2018 , ' Porcupine : A visual pipeline tool for neuroimaging analysis ' , PLoS Computational Biology , vol. 14 , no. 5 , pp. e1006064 . https://doi.org/10.1371/journal.pcbi.1006064","raw_type":"article"},{"id":"pmh:oai:research.vu.nl:publications/800e2096-77e3-4f15-9565-d5e65763db85","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/citedby.url?scp=85048178428&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306400546","display_name":"Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"van Mourik, T, Snoek, L, Knapen, T H J & Norris, D G 2018, 'Porcupine: A visual pipeline tool for neuroimaging analysis', PLOS Computional Biology, vol. 14, no. 5, e1006064, pp. 1-10. https://doi.org/10.1371/journal.pcbi.1006064","raw_type":"article"},{"id":"pmh:ru:oai:repository.ubn.ru.nl:2066/192704","is_oa":true,"landing_page_url":"http://hdl.handle.net/2066/192704","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plos Computational Biology, 14, 1 - 10","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/ad2096da-160f-4714-b590-d13439029fe6","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/porcupine-a-visual-pipeline-tool-for-neuroimaging-analysis(ad2096da-160f-4714-b590-d13439029fe6).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 14(5):e1006064. Public Library of Science","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:vu:oai:research.vu.nl:publications/800e2096-77e3-4f15-9565-d5e65763db85","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/800e2096-77e3-4f15-9565-d5e65763db85","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computional Biology, 14(5):e1006064, 1 - 10. Public Library of Science","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006064","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006064","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006064&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5389449796","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320320934","funder_display_name":"Koninklijke Nederlandse Akademie van Wetenschappen"}],"funders":[{"id":"https://openalex.org/F4320320934","display_name":"Koninklijke Nederlandse Akademie van Wetenschappen","ror":"https://ror.org/043c0p156"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2754509621.pdf","grobid_xml":"https://content.openalex.org/works/W2754509621.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W173308686","https://openalex.org/W1487374707","https://openalex.org/W1574680346","https://openalex.org/W1842847600","https://openalex.org/W1897139626","https://openalex.org/W1979253984","https://openalex.org/W1989266964","https://openalex.org/W2000278813","https://openalex.org/W2069529061","https://openalex.org/W2113619522","https://openalex.org/W2114877339","https://openalex.org/W2145680887","https://openalex.org/W2151130155","https://openalex.org/W2155624710","https://openalex.org/W2300867265","https://openalex.org/W2476899828","https://openalex.org/W2513565271","https://openalex.org/W2534699084","https://openalex.org/W2567940875","https://openalex.org/W2574968185","https://openalex.org/W2951103577","https://openalex.org/W2953134824","https://openalex.org/W2977883299","https://openalex.org/W3113043731","https://openalex.org/W4234460974","https://openalex.org/W6607099374","https://openalex.org/W6638918635","https://openalex.org/W6729352201"],"related_works":["https://openalex.org/W2461078469","https://openalex.org/W123790205","https://openalex.org/W2085515337","https://openalex.org/W3087706721","https://openalex.org/W3102852402","https://openalex.org/W4287664162","https://openalex.org/W4385695489","https://openalex.org/W827014118","https://openalex.org/W4247806713","https://openalex.org/W4378700020"],"abstract_inverted_index":{"The":[0,83],"field":[1],"of":[2,65,88,96,126,136,167,192,203,233,252],"neuroimaging":[3,155],"is":[4,160,269],"rapidly":[5],"adopting":[6],"a":[7,70,116,127,133,183,227,249],"more":[8,28,35,55],"reproducible":[9,134,243],"approach":[10],"to":[11,40,57,102,146,161,174,181,241],"data":[12,24,32],"acquisition":[13],"and":[14,18,23,78,139,178,196,201,229,235,244,254,273],"analysis.":[15,67,142],"Data":[16],"structures":[17],"formats":[19],"are":[20,26],"being":[21],"standardised":[22],"analyses":[25],"getting":[27],"automated.":[29],"However,":[30],"as":[31,256,258],"analysis":[33,43,76,81,111,156,234],"becomes":[34],"complicated,":[36],"researchers":[37,163,190,240],"often":[38],"have":[39,191],"write":[41],"longer":[42],"scripts,":[44],"spanning":[45],"different":[46],"tools":[47],"across":[48],"multiple":[49],"programming":[50],"languages.":[51],"This":[52,206],"makes":[53],"it":[54,113,237],"difficult":[56],"share":[58],"or":[59],"recreate":[60],"code,":[61,112],"reducing":[62],"the":[63,66,89,94,98,110,121,124,165,188,199,209,224,276],"reproducibility":[64],"We":[68,247],"present":[69],"tool,":[71],"Porcupine,":[72,221],"that":[73],"constructs":[74],"one's":[75,141],"visually":[77],"automatically":[79],"produces":[80],"code.":[82],"graphical":[84],"representation":[85],"improves":[86,187],"understanding":[87],"performed":[90],"analysis,":[91],"while":[92],"retaining":[93],"flexibility":[95],"modifying":[97],"produced":[99],"code":[100,122],"manually":[101],"custom":[103],"needs.":[104],"Not":[105],"only":[106],"does":[107],"Porcupine":[108,144,186,268],"produce":[109],"also":[114],"creates":[115],"shareable":[117,245],"environment":[118],"for":[119,239,261],"running":[120],"in":[123,150],"form":[125],"Docker":[128],"image.":[129],"Together,":[130],"this":[131],"forms":[132],"way":[135],"constructing,":[137],"visualising":[138],"sharing":[140],"Currently,":[143],"links":[145],"Nipype":[147],"functionalities,":[148],"which":[149,212],"turn":[151],"accesses":[152],"most":[153],"standard":[154],"tools.":[157],"Our":[158],"goal":[159],"release":[162],"from":[164],"constraints":[166],"specific":[168],"implementation":[169],"details,":[170],"thereby":[171],"freeing":[172],"them":[173],"think":[175],"about":[176],"novel":[177],"creative":[179],"ways":[180],"solve":[182],"given":[184],"problem.":[185],"overview":[189],"their":[193,204],"processing":[194],"pipelines,":[195],"facilitates":[197],"both":[198],"development":[200],"communication":[202],"work.":[205],"will":[207],"reduce":[208],"threshold":[210],"at":[211],"less":[213],"expert":[214],"users":[215],"can":[216],"generate":[217],"reusable":[218],"pipelines.":[219],"With":[220],"we":[222],"bridge":[223],"gap":[225],"between":[226],"conceptual":[228],"an":[230],"implementational":[231],"level":[232],"make":[236],"easier":[238],"create":[242],"science.":[246],"provide":[248],"wide":[250],"range":[251],"examples":[253],"documentation,":[255],"well":[257],"installer":[259],"files":[260],"all":[262],"platforms":[263],"on":[264],"our":[265],"website:":[266],"https://timvanmourik.github.io/Porcupine.":[267],"free,":[270],"open":[271],"source,":[272],"released":[274],"under":[275],"GNU":[277],"General":[278],"Public":[279],"License":[280],"v3.0.":[281]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-07T14:57:38.498316","created_date":"2025-10-10T00:00:00"}
