{"id":"https://openalex.org/W29474446","doi":"https://doi.org/10.1371/journal.pcbi.1005991","title":"Open working group on agents in digital libraries","display_name":"Open working group on agents in digital libraries","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W29474446","doi":"https://doi.org/10.1371/journal.pcbi.1005991","mag":"29474446"},"language":"en","primary_location":{"id":"mag:29474446","is_oa":true,"landing_page_url":"https://librarytechnology.org/document/8401","pdf_url":null,"source":{"id":"https://openalex.org/S119508283","display_name":"D-Lib Magazine","issn_l":"1082-9873","issn":["1082-9873"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316316","host_organization_name":"Corporation for National Research Initiatives","host_organization_lineage":["https://openalex.org/P4310316316"],"host_organization_lineage_names":["Corporation for National Research Initiatives"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"D-Lib Magazine","raw_type":null},"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://librarytechnology.org/document/8401","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040049937","display_name":"Jos\u00e9 Borbinha","orcid":"https://orcid.org/0000-0001-5463-8438"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jos\u00e9 Borbinha","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-5463-8438","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5040049937"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00403244,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":"1","first_page":"e1005991","last_page":"e1005991"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.8944000005722046,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.8944000005722046,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10456","display_name":"Multi-Agent Systems and Negotiation","score":0.8569999933242798,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/group","display_name":"Group (periodic table)","score":0.6574612855911255},{"id":"https://openalex.org/keywords/digital-library","display_name":"Digital library","score":0.5206255316734314},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4181944727897644},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3280823528766632},{"id":"https://openalex.org/keywords/art","display_name":"Art","score":0.22524532675743103},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11853942275047302},{"id":"https://openalex.org/keywords/literature","display_name":"Literature","score":0.09044212102890015}],"concepts":[{"id":"https://openalex.org/C2781311116","wikidata":"https://www.wikidata.org/wiki/Q83306","display_name":"Group (periodic table)","level":2,"score":0.6574612855911255},{"id":"https://openalex.org/C513874922","wikidata":"https://www.wikidata.org/wiki/Q212805","display_name":"Digital library","level":3,"score":0.5206255316734314},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4181944727897644},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3280823528766632},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.22524532675743103},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11853942275047302},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.09044212102890015},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C164913051","wikidata":"https://www.wikidata.org/wiki/Q482","display_name":"Poetry","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:29474446","is_oa":true,"landing_page_url":"https://librarytechnology.org/document/8401","pdf_url":null,"source":{"id":"https://openalex.org/S119508283","display_name":"D-Lib Magazine","issn_l":"1082-9873","issn":["1082-9873"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316316","host_organization_name":"Corporation for National Research Initiatives","host_organization_lineage":["https://openalex.org/P4310316316"],"host_organization_lineage_names":["Corporation for National Research Initiatives"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"D-Lib Magazine","raw_type":null}],"best_oa_location":{"id":"mag:29474446","is_oa":true,"landing_page_url":"https://librarytechnology.org/document/8401","pdf_url":null,"source":{"id":"https://openalex.org/S119508283","display_name":"D-Lib Magazine","issn_l":"1082-9873","issn":["1082-9873"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316316","host_organization_name":"Corporation for National Research Initiatives","host_organization_lineage":["https://openalex.org/P4310316316"],"host_organization_lineage_names":["Corporation for National Research Initiatives"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"D-Lib Magazine","raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3437849365","display_name":null,"funder_award_id":"5U54CA143907","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4944619252","display_name":null,"funder_award_id":"5U54CA143907","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5246642491","display_name":null,"funder_award_id":"R01 CA180149","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G619968633","display_name":null,"funder_award_id":"1R01CA180149","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6658740609","display_name":null,"funder_award_id":"1R01CA180149","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8956954258","display_name":null,"funder_award_id":"U54 CA143907","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306260","display_name":"Breast Cancer Research Foundation","ror":"https://ror.org/0348ff195"},{"id":"https://openalex.org/F4320316625","display_name":"Jayne Koskinas Ted Giovanis Foundation for Health and Policy","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2101698988"],"related_works":["https://openalex.org/W2770754357","https://openalex.org/W1578024082","https://openalex.org/W1579124629","https://openalex.org/W1921420874","https://openalex.org/W777799099","https://openalex.org/W185003220","https://openalex.org/W1797076248","https://openalex.org/W1518999579","https://openalex.org/W1589528773","https://openalex.org/W1594644976","https://openalex.org/W1562108881","https://openalex.org/W1559433383","https://openalex.org/W2338055087","https://openalex.org/W2048136356","https://openalex.org/W71688395","https://openalex.org/W829549625","https://openalex.org/W2530630776","https://openalex.org/W2782910082","https://openalex.org/W1978857097","https://openalex.org/W1599801280"],"abstract_inverted_index":{"Many":[0],"multicellular":[1,41,63,230,251],"systems":[2,22,42,231,252],"problems":[3],"can":[4],"only":[5],"be":[6,256],"understood":[7],"by":[8,180],"studying":[9,79],"how":[10],"cells":[11,26,56,82,161],"move,":[12],"grow,":[13],"divide,":[14],"interact,":[15],"and":[16,31,50,53,75,102,115,120,137,147,190,200,214,221,244,262,286,296],"die.":[17],"Tissue-scale":[18],"dynamics":[19,194],"emerge":[20],"from":[21,276],"of":[23,123,155,184,195,206,217,224],"many":[24,51,80],"interacting":[25,55,81],"as":[27],"they":[28],"respond":[29],"to":[30,94,98,135,159,239],"influence":[32],"their":[33],"microenvironment.":[34],"The":[35,126,280],"ideal":[36],"\"virtual":[37],"laboratory\"":[38],"for":[39,78,109,273],"such":[40],"simulates":[43],"both":[44,72],"the":[45,60,73,76,124,153,182,193,207,222,291],"biochemical":[46],"microenvironment":[47],"(the":[48,57],"\"stage\")":[49],"mechanically":[52],"biochemically":[54],"\"players\"":[58],"upon":[59,89],"stage).":[61],"PhysiCell-physics-based":[62],"simulator-is":[64],"an":[65],"open":[66],"source":[67,282],"agent-based":[68],"simulator":[69,253],"that":[70,254],"provides":[71],"stage":[74],"players":[77],"in":[83,203,228],"dynamic":[84],"tissue":[85],"microenvironments.":[86],"It":[87,105,265],"builds":[88],"a":[90,249,268],"multi-substrate":[91],"biotransport":[92],"solver":[93],"link":[95],"cell":[96,110,219],"phenotype":[97],"multiple":[99,218],"diffusing":[100],"substrates":[101],"signaling":[103],"factors.":[104],"includes":[106],"biologically-driven":[107],"sub-models":[108],"cycling,":[111],"apoptosis,":[112],"necrosis,":[113],"solid":[114],"fluid":[116],"volume":[117],"changes,":[118],"mechanics,":[119],"motility":[121],"\"out":[122],"box.\"":[125],"C++":[127],"code":[128,271],"has":[129,142],"minimal":[130],"dependencies,":[131],"making":[132],"it":[133],"simple":[134],"maintain":[136],"deploy":[138],"across":[139],"platforms.":[140,279],"PhysiCell":[141,179,225,247,281],"been":[143],"parallelized":[144],"with":[145,152,226,237,259],"OpenMP,":[146],"its":[148],"performance":[149,263],"scales":[150],"linearly":[151],"number":[154],"cells.":[156],"Simulations":[157],"up":[158],"105-106":[160],"are":[162,170,288],"feasible":[163],"on":[164,172,192],"quad-core":[165],"desktop":[166],"workstations;":[167],"larger":[168],"simulations":[169],"attainable":[171],"single":[173],"HPC":[174],"compute":[175],"nodes.":[176],"We":[177,209],"demonstrate":[178,210],"simulating":[181],"impact":[183],"necrotic":[185],"core":[186],"biomechanics,":[187],"3-D":[188],"geometry,":[189],"stochasticity":[191],"hanging":[196],"drop":[197],"tumor":[198],"spheroids":[199],"ductal":[201],"carcinoma":[202],"situ":[204],"(DCIS)":[205],"breast.":[208],"stochastic":[211],"motility,":[212],"chemical":[213],"contact-based":[215],"interaction":[216],"types,":[220],"extensibility":[223],"examples":[227],"synthetic":[229],"(a":[232],"\"cellular":[233],"cargo":[234],"delivery\"":[235],"system,":[236],"application":[238],"anti-cancer":[240],"treatments),":[241],"cancer":[242,245],"heterogeneity,":[243],"immunology.":[246],"is":[248],"powerful":[250],"will":[255],"continually":[257],"improved":[258],"new":[260],"capabilities":[261],"improvements.":[264],"also":[266],"represents":[267],"significant":[269],"independent":[270],"base":[272],"replicating":[274],"results":[275],"other":[277],"simulation":[278],"code,":[283],"examples,":[284],"documentation,":[285],"support":[287],"available":[289],"under":[290],"BSD":[292],"license":[293],"at":[294],"http://PhysiCell.MathCancer.org":[295],"http://PhysiCell.sf.net.":[297]},"counts_by_year":[],"updated_date":"2025-07-23T07:19:39.026857","created_date":"2016-06-24T00:00:00"}
