{"id":"https://openalex.org/W2951561592","doi":"https://doi.org/10.1371/journal.pcbi.1005688","title":"A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium","display_name":"A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium","publication_year":2017,"publication_date":"2017-07-28","ids":{"openalex":"https://openalex.org/W2951561592","doi":"https://doi.org/10.1371/journal.pcbi.1005688","mag":"2951561592","pmid":"https://pubmed.ncbi.nlm.nih.gov/28753601"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1005688","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005688","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005688&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005688&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074871064","display_name":"Oliver J. Maclaren","orcid":"https://orcid.org/0000-0002-3982-4539"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Oliver J. Maclaren","raw_affiliation_strings":["Department of Engineering Science, University of Auckland, Auckland, New Zealand"],"raw_orcid":"https://orcid.org/0000-0002-3982-4539","affiliations":[{"raw_affiliation_string":"Department of Engineering Science, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814485","display_name":"Aim\u00e9e Parker","orcid":"https://orcid.org/0000-0003-1765-9656"},"institutions":[{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Aim\u00e9e Parker","raw_affiliation_strings":["Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom","institution_ids":["https://openalex.org/I3018370718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089750423","display_name":"Carmen Pin","orcid":"https://orcid.org/0000-0001-8734-6167"},"institutions":[{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Carmen Pin","raw_affiliation_strings":["Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom","institution_ids":["https://openalex.org/I3018370718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057650251","display_name":"Simon R. Carding","orcid":"https://orcid.org/0000-0002-2383-9701"},"institutions":[{"id":"https://openalex.org/I1118541","display_name":"University of East Anglia","ror":"https://ror.org/026k5mg93","country_code":"GB","type":"education","lineage":["https://openalex.org/I1118541"]},{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Simon R. Carding","raw_affiliation_strings":["Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom","Norwich Medical School, University of East Anglia, Norwich, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom","institution_ids":["https://openalex.org/I3018370718"]},{"raw_affiliation_string":"Norwich Medical School, University of East Anglia, Norwich, United Kingdom","institution_ids":["https://openalex.org/I1118541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049110134","display_name":"Alastair J.M. Watson","orcid":"https://orcid.org/0000-0003-3326-0426"},"institutions":[{"id":"https://openalex.org/I1118541","display_name":"University of East Anglia","ror":"https://ror.org/026k5mg93","country_code":"GB","type":"education","lineage":["https://openalex.org/I1118541"]},{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alastair J. M. Watson","raw_affiliation_strings":["Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom","Norwich Medical School, University of East Anglia, Norwich, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gut Health and Food Safety Research Programme, Institute of Food Research, Norwich, United Kingdom","institution_ids":["https://openalex.org/I3018370718"]},{"raw_affiliation_string":"Norwich Medical School, University of East Anglia, Norwich, United Kingdom","institution_ids":["https://openalex.org/I1118541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026910783","display_name":"Alexander G. Fletcher","orcid":"https://orcid.org/0000-0003-0525-4336"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alexander G. Fletcher","raw_affiliation_strings":["Bateson Centre, University of Sheffield, Sheffield, United Kingdom","School of Mathematics and Statistics, University of Sheffield, Sheffield, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-0525-4336","affiliations":[{"raw_affiliation_string":"Bateson Centre, University of Sheffield, Sheffield, United Kingdom","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sheffield, Sheffield, United Kingdom","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087448925","display_name":"Helen M. Byrne","orcid":"https://orcid.org/0000-0003-1771-5910"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Helen M. Byrne","raw_affiliation_strings":["Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025791169","display_name":"Philip K. Maini","orcid":"https://orcid.org/0000-0002-0146-9164"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Philip K. Maini","raw_affiliation_strings":["Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-0146-9164","affiliations":[{"raw_affiliation_string":"Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5025791169","https://openalex.org/A5026910783","https://openalex.org/A5041814485","https://openalex.org/A5049110134","https://openalex.org/A5057650251","https://openalex.org/A5074871064","https://openalex.org/A5087448925","https://openalex.org/A5089750423"],"corresponding_institution_ids":["https://openalex.org/I1118541","https://openalex.org/I154130895","https://openalex.org/I3018370718","https://openalex.org/I40120149","https://openalex.org/I91136226"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2296,"currency":"EUR","value_usd":2476},"fwci":3.8018,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.94187952,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"13","issue":"7","first_page":"e1005688","last_page":"e1005688"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10848","display_name":"Advanced Multi-Objective Optimization Algorithms","score":0.9399999976158142,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9384999871253967,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6132550835609436},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5755141377449036},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5692431330680847},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5419512391090393},{"id":"https://openalex.org/keywords/hierarchical-database-model","display_name":"Hierarchical database model","score":0.46517324447631836},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.44845765829086304},{"id":"https://openalex.org/keywords/mathematical-model","display_name":"Mathematical model","score":0.41852885484695435},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40754178166389465},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39614802598953247},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3276441693305969},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22844886779785156},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1979299783706665},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.179637610912323}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6132550835609436},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5755141377449036},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5692431330680847},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5419512391090393},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.46517324447631836},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.44845765829086304},{"id":"https://openalex.org/C76969082","wikidata":"https://www.wikidata.org/wiki/Q486902","display_name":"Mathematical model","level":2,"score":0.41852885484695435},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40754178166389465},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39614802598953247},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3276441693305969},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22844886779785156},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1979299783706665},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.179637610912323},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.1005688","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005688","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005688&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:28753601","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28753601","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:120125","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1005688","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005688","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:c51090bb4d624b438d20bf4f061ad52c","is_oa":true,"landing_page_url":"https://doaj.org/article/c51090bb4d624b438d20bf4f061ad52c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 13, Iss 7, p e1005688 (2017)","raw_type":"article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:003fbdb8-1f29-4379-92a3-d9a7237aff0b","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:003fbdb8-1f29-4379-92a3-d9a7237aff0b","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:d4dbaefc-e017-43ad-8f09-a9ef1b147a51","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:d4dbaefc-e017-43ad-8f09-a9ef1b147a51","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5550005","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5550005","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/44010","is_oa":true,"landing_page_url":"https://hdl.handle.net/2292/44010","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1005688","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005688","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005688&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G250169711","display_name":"A multidisciplinary approach to studying crypt-villus homeostasis and regeneration in the intestinal epithelium","funder_award_id":"BB/K017144/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3024511915","display_name":"A new approach to Science at the Life Sciences Interface","funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3858961922","display_name":null,"funder_award_id":"BBS/E/F/00044446","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5228463136","display_name":"A multidisciplinary approach to studying crypt-villus homeostasis and regeneration in the intestinal epithelium","funder_award_id":"BB/K018256/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5320101875","display_name":null,"funder_award_id":"J004529","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5518562339","display_name":null,"funder_award_id":"BB/K017578/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6428962470","display_name":null,"funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6893741347","display_name":null,"funder_award_id":"BB/K017144/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7793616676","display_name":"A multidisciplinary approach to studying crypt-villus homeostasis and regeneration in the intestinal epithelium","funder_award_id":"BB/K017578/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8493347621","display_name":null,"funder_award_id":"BB/K018256/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8714263259","display_name":null,"funder_award_id":"BB/J004529/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951561592.pdf","grobid_xml":"https://content.openalex.org/works/W2951561592.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W29271843","https://openalex.org/W30853191","https://openalex.org/W146619314","https://openalex.org/W161994183","https://openalex.org/W1410350041","https://openalex.org/W1490229695","https://openalex.org/W1499965417","https://openalex.org/W1512208174","https://openalex.org/W1524326598","https://openalex.org/W1526262927","https://openalex.org/W1555627060","https://openalex.org/W1556854658","https://openalex.org/W1574743651","https://openalex.org/W1629431972","https://openalex.org/W1648254108","https://openalex.org/W1653412747","https://openalex.org/W1746819321","https://openalex.org/W1855378005","https://openalex.org/W1967419364","https://openalex.org/W1968969468","https://openalex.org/W1974467110","https://openalex.org/W1977918928","https://openalex.org/W1981068608","https://openalex.org/W1984769553","https://openalex.org/W1985093013","https://openalex.org/W1988541692","https://openalex.org/W1997124480","https://openalex.org/W1999316583","https://openalex.org/W2007105977","https://openalex.org/W2017470614","https://openalex.org/W2021830477","https://openalex.org/W2033934939","https://openalex.org/W2036852794","https://openalex.org/W2045656233","https://openalex.org/W2045799785","https://openalex.org/W2046947486","https://openalex.org/W2047310779","https://openalex.org/W2052195764","https://openalex.org/W2053332694","https://openalex.org/W2056971860","https://openalex.org/W2065220128","https://openalex.org/W2070776588","https://openalex.org/W2080971404","https://openalex.org/W2084677573","https://openalex.org/W2092124742","https://openalex.org/W2099772777","https://openalex.org/W2102787760","https://openalex.org/W2103878673","https://openalex.org/W2107280554","https://openalex.org/W2111966451","https://openalex.org/W2116920356","https://openalex.org/W2128348744","https://openalex.org/W2139812092","https://openalex.org/W2140696118","https://openalex.org/W2143117649","https://openalex.org/W2143891888","https://openalex.org/W2145189896","https://openalex.org/W2145860152","https://openalex.org/W2146435848","https://openalex.org/W2146548337","https://openalex.org/W2151010119","https://openalex.org/W2153618863","https://openalex.org/W2159155233","https://openalex.org/W2165406227","https://openalex.org/W2166594994","https://openalex.org/W2169264416","https://openalex.org/W2169315100","https://openalex.org/W2171010898","https://openalex.org/W2304048171","https://openalex.org/W2326182303","https://openalex.org/W2410148027","https://openalex.org/W2410190751","https://openalex.org/W2461668574","https://openalex.org/W2467426346","https://openalex.org/W2537202170","https://openalex.org/W2787983500","https://openalex.org/W2949179636","https://openalex.org/W2951147613","https://openalex.org/W2963199678","https://openalex.org/W3008437073","https://openalex.org/W3020204246","https://openalex.org/W3100950480","https://openalex.org/W3104128850","https://openalex.org/W3122478777","https://openalex.org/W3146501913","https://openalex.org/W4205814206","https://openalex.org/W4211049957","https://openalex.org/W4248681815","https://openalex.org/W4292403327","https://openalex.org/W4300201699","https://openalex.org/W4302423442","https://openalex.org/W6601199441","https://openalex.org/W6605854690","https://openalex.org/W6631500773","https://openalex.org/W6670736902","https://openalex.org/W6814036419","https://openalex.org/W6841455387","https://openalex.org/W7074602641"],"related_works":["https://openalex.org/W2002739602","https://openalex.org/W2345647014","https://openalex.org/W2201192772","https://openalex.org/W3136891595","https://openalex.org/W2535030201","https://openalex.org/W1964819397","https://openalex.org/W1684557515","https://openalex.org/W2077360181","https://openalex.org/W2366390422","https://openalex.org/W2127373861"],"abstract_inverted_index":{"Our":[0],"work":[1],"addresses":[2],"two":[3],"key":[4],"challenges,":[5],"one":[6,9],"biological":[7],"and":[8,18,33,36,48,83,103,119,127,135,141,155,158,169],"methodological.":[10],"First,":[11],"we":[12,89],"aim":[13],"to":[14,43,77,161,164,190],"understand":[15],"how":[16,37,76,163],"proliferation":[17],"cell":[19,193],"migration":[20],"rates":[21],"in":[22,55,58,62,74,116],"the":[23,105,111,171,179],"intestinal":[24],"epithelium":[25],"are":[26,139],"related":[27,142],"under":[28,69],"healthy,":[29],"damaged":[30],"(Ara-C":[31],"treated)":[32],"recovering":[34],"conditions,":[35],"these":[38,70,81],"relations":[39],"can":[40,108],"be":[41],"used":[42],"identify":[44],"mechanisms":[45],"of":[46,113,124,173,182],"repair":[47],"regeneration.":[49],"We":[50,148,176],"analyse":[51],"new":[52],"data,":[53],"presented":[54],"more":[56,78],"detail":[57],"a":[59,91,97,185],"companion":[60],"paper,":[61],"which":[63],"BrdU/IdU":[64],"cell-labelling":[65],"experiments":[66],"were":[67],"performed":[68],"respective":[71],"conditions.":[72],"Second,":[73],"considering":[75],"rigorously":[79],"process":[80],"data":[82],"interpret":[84],"them":[85,160],"using":[86],"mathematical":[87,122],"models,":[88],"use":[90,159],"probabilistic,":[92],"hierarchical":[93,144],"approach.":[94],"This":[95],"provides":[96],"best-practice":[98],"approach":[99],"for":[100,178],"systematically":[101],"modelling":[102],"understanding":[104],"uncertainties":[106],"that":[107,184],"otherwise":[109],"undermine":[110],"generation":[112],"reliable":[114],"conclusions-uncertainties":[115],"experimental":[117],"measurement":[118],"treatment,":[120],"difficult-to-compare":[121],"models":[123,138],"underlying":[125],"mechanisms,":[126],"unknown":[128],"or":[129],"unobserved":[130],"parameters.":[131],"Both":[132],"spatially":[133],"discrete":[134],"continuous":[136],"mechanistic":[137],"considered":[140],"via":[143],"conditional":[145],"probability":[146],"assumptions.":[147],"perform":[149],"model":[150,167,188],"checks":[151],"on":[152],"both":[153],"in-sample":[154],"out-of-sample":[156],"datasets":[157],"show":[162],"test":[165],"possible":[166],"improvements":[168],"assess":[170],"robustness":[172],"our":[174],"conclusions.":[175],"conclude,":[177],"present":[180],"set":[181],"experiments,":[183],"primarily":[186],"proliferation-driven":[187],"suffices":[189],"predict":[191],"labelled":[192],"dynamics":[194],"over":[195],"most":[196],"time-scales.":[197]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
