{"id":"https://openalex.org/W2601934706","doi":"https://doi.org/10.1371/journal.pcbi.1005455","title":"PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction","display_name":"PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction","publication_year":2017,"publication_date":"2017-03-24","ids":{"openalex":"https://openalex.org/W2601934706","doi":"https://doi.org/10.1371/journal.pcbi.1005455","mag":"2601934706","pmid":"https://pubmed.ncbi.nlm.nih.gov/28339468"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1005455","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005455","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005455&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005455&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, \u00fcr\u00fcmqi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, \u00fcr\u00fcmqi, China","institution_ids":["https://openalex.org/I4210106108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083469101","display_name":"Zhi-An Huang","orcid":"https://orcid.org/0000-0001-9974-148X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-An Huang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0001-9974-148X","affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100979503","display_name":"Guiying Yan","orcid":"https://orcid.org/0000-0002-1736-5482"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210120485","display_name":"Academy of Mathematics and Systems Science","ror":"https://ror.org/02jkmyk67","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210120485"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gui-Ying Yan","raw_affiliation_strings":["Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210120485","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100734156","display_name":"Zhengwei Li","orcid":"https://orcid.org/0000-0003-1644-1006"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng-Wei Li","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039966518","display_name":"Zhenkun Wen","orcid":"https://orcid.org/0000-0003-2124-9799"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenkun Wen","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036210249","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9028-5342"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-9028-5342","affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5036210249","https://openalex.org/A5052762681"],"corresponding_institution_ids":["https://openalex.org/I180726961","https://openalex.org/I25757504"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":17.5586,"has_fulltext":true,"cited_by_count":395,"citation_normalized_percentile":{"value":0.9970562,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"13","issue":"3","first_page":"e1005455","last_page":"e1005455"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5913243293762207},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.5524883270263672},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5372436046600342},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5217600464820862},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5089178085327148},{"id":"https://openalex.org/keywords/cross-validation","display_name":"Cross-validation","score":0.4733562469482422},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4464966058731079},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.4184759557247162},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37508639693260193},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3221614360809326},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31038403511047363},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19499832391738892},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16019442677497864},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1590958833694458},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11335647106170654},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10763895511627197}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5913243293762207},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.5524883270263672},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5372436046600342},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5217600464820862},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5089178085327148},{"id":"https://openalex.org/C27181475","wikidata":"https://www.wikidata.org/wiki/Q541014","display_name":"Cross-validation","level":2,"score":0.4733562469482422},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4464966058731079},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4184759557247162},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37508639693260193},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3221614360809326},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31038403511047363},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19499832391738892},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16019442677497864},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1590958833694458},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11335647106170654},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10763895511627197},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1005455","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005455","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005455&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:28339468","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28339468","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1005455","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005455","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:60530b80e8c8419b8ef82380ce6bdd6e","is_oa":true,"landing_page_url":"https://doaj.org/article/60530b80e8c8419b8ef82380ce6bdd6e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 13, Iss 3, p e1005455 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4262139","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5384769","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/4786372","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/PBMDA_A_novel_and_effective_path-based_computational_model_for_miRNA-disease_association_prediction/4786372","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1005455","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005455","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005455&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3158980518","display_name":"\u57fa\u4e8e\u6c28\u57fa\u9178\u5e8f\u5217\u53ca\u836f\u7269\u5316\u5408\u7269\u5206\u5b50\u6307\u7eb9\u7684\u836f\u7269\uff0d\u9776\u6807\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u7814\u7a76","funder_award_id":"61572506","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3759432652","display_name":null,"funder_award_id":"11301517","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5448901618","display_name":"\u4fe1\u606f\u8d28\u5fc3\u7406\u8bba\u4e0e\u89c6\u9891\u7be1\u6539\u68c0\u6d4b\u6280\u672f\u7814\u7a76","funder_award_id":"61572328","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7134911743","display_name":"\u590d\u6742\u75be\u75c5\u76f8\u5173\u7684\u975e\u7f16\u7801RNA\u8bc6\u522b\u6a21\u578b\u53ca\u7b97\u6cd5\u7814\u7a76","funder_award_id":"11371355","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8413540691","display_name":"\u57fa\u4e8e\u9ad8\u901a\u91cfRNA-Seq\u548c\u591a\u76ee\u6807\u534f\u540c\u6f14\u5316\u6a21\u56e0\u8ba1\u7b97\u7684\u75be\u75c5\u6a21\u5757\u8bc6\u522b\u7814\u7a76","funder_award_id":"61471246","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8718860373","display_name":"\u56fe\u7406\u8bba\u548c\u7b97\u6cd5\u7814\u7a76\u53ca\u5176\u5728\u751f\u7269\u4fe1\u606f\u5b66\u4e2d\u7684\u5e94\u7528","funder_award_id":"11631014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W14098964","https://openalex.org/W144423133","https://openalex.org/W1158178075","https://openalex.org/W1436642346","https://openalex.org/W1527080855","https://openalex.org/W1920303762","https://openalex.org/W1964731342","https://openalex.org/W1967087625","https://openalex.org/W1968631483","https://openalex.org/W1976618757","https://openalex.org/W1987360584","https://openalex.org/W1989454102","https://openalex.org/W1992272392","https://openalex.org/W2010215928","https://openalex.org/W2013411684","https://openalex.org/W2014946489","https://openalex.org/W2017426710","https://openalex.org/W2021501684","https://openalex.org/W2022732522","https://openalex.org/W2031621381","https://openalex.org/W2034346151","https://openalex.org/W2035213975","https://openalex.org/W2039606711","https://openalex.org/W2047529648","https://openalex.org/W2051055358","https://openalex.org/W2059382687","https://openalex.org/W2075860675","https://openalex.org/W2076600424","https://openalex.org/W2086809547","https://openalex.org/W2096433394","https://openalex.org/W2099169447","https://openalex.org/W2099435530","https://openalex.org/W2106029302","https://openalex.org/W2118814218","https://openalex.org/W2121629705","https://openalex.org/W2124756133","https://openalex.org/W2126619650","https://openalex.org/W2128768066","https://openalex.org/W2129158737","https://openalex.org/W2129384849","https://openalex.org/W2132694427","https://openalex.org/W2136037673","https://openalex.org/W2138664009","https://openalex.org/W2141222510","https://openalex.org/W2142937131","https://openalex.org/W2145361279","https://openalex.org/W2146292498","https://openalex.org/W2150291212","https://openalex.org/W2152970345","https://openalex.org/W2157968886","https://openalex.org/W2158135353","https://openalex.org/W2160467221","https://openalex.org/W2162066487","https://openalex.org/W2189673550","https://openalex.org/W2213532196","https://openalex.org/W2302413701","https://openalex.org/W2317301418","https://openalex.org/W2334728720","https://openalex.org/W2344144945","https://openalex.org/W2345181615","https://openalex.org/W2408796111","https://openalex.org/W2410390867","https://openalex.org/W2437043110","https://openalex.org/W2462108616","https://openalex.org/W2512308096"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W4392896533","https://openalex.org/W2062945643","https://openalex.org/W2050308539","https://openalex.org/W3151405604","https://openalex.org/W816105089","https://openalex.org/W2114797768","https://openalex.org/W2380654781","https://openalex.org/W2176214140","https://openalex.org/W2516873349"],"abstract_inverted_index":{"In":[0,114,199],"the":[1,30,44,57,99,177,200,233,245,261],"recent":[2],"few":[3],"years,":[4],"an":[5],"increasing":[6],"number":[7],"of":[8,27,46,59,76,154,179,186,197,203,218,263],"studies":[9,202],"have":[10,38,222],"shown":[11],"that":[12,250],"microRNAs":[13],"(miRNAs)":[14],"play":[15],"critical":[16],"roles":[17],"in":[18,176,242],"many":[19],"fundamental":[20],"and":[21,64,68,81,102,137,145,158,182,188,191,214,238],"important":[22,53,205],"biological":[23,83],"processes.":[24],"As":[25,169],"one":[26],"pathogenetic":[28],"factors,":[29],"molecular":[31],"mechanisms":[32],"underlying":[33],"human":[34,72,128,206],"complex":[35,73],"diseases":[36],"still":[37],"not":[39],"been":[40,223],"completely":[41],"understood":[42],"from":[43,230],"perspective":[45],"miRNA.":[47],"Predicting":[48],"potential":[49,92,166],"miRNA-disease":[50,93,129,167],"associations":[51],"makes":[52],"contributions":[54],"to":[55,164,259],"understanding":[56],"pathogenesis":[58],"diseases,":[60,101,207],"developing":[61],"new":[62],"drugs,":[63],"formulating":[65],"individualized":[66],"diagnosis":[67],"treatment":[69],"for":[70,98,110,143],"diverse":[71],"diseases.":[74,146],"Instead":[75],"only":[77],"depending":[78],"on":[79],"expensive":[80],"time-consuming":[82],"experiments,":[84],"computational":[85,257],"prediction":[86,121],"models":[87,241],"are":[88],"effective":[89],"by":[90,125,226],"predicting":[91],"associations,":[94,130],"prioritizing":[95],"candidate":[96],"miRNAs":[97,105,144,221],"investigated":[100],"selecting":[103],"those":[104],"with":[106],"higher":[107],"association":[108],"probabilities":[109],"further":[111,159],"experimental":[112,228],"validation.":[113],"this":[115],"study,":[116],"Path-Based":[117],"MiRNA-Disease":[118],"Association":[119],"(PBMDA)":[120],"model":[122,148],"was":[123],"proposed":[124],"integrating":[126],"known":[127],"miRNA":[131],"functional":[132],"similarity,":[133,136],"disease":[134],"semantic":[135],"Gaussian":[138],"interaction":[139],"profile":[140],"kernel":[141],"similarity":[142],"This":[147],"constructed":[149],"a":[150,170,255],"heterogeneous":[151],"graph":[152],"consisting":[153],"three":[155,204],"interlinked":[156],"sub-graphs":[157],"adopted":[160],"depth-first":[161],"search":[162],"algorithm":[163],"infer":[165],"associations.":[168,265],"result,":[171],"PBMDA":[172,237,251],"achieved":[173],"reliable":[174,246],"performance":[175,235,247],"frameworks":[178],"both":[180],"local":[181],"global":[183],"LOOCV":[184],"(AUCs":[185],"0.8341":[187],"0.9169,":[189],"respectively)":[190],"5-fold":[192],"cross":[193],"validation":[194],"(average":[195],"AUC":[196],"0.9172).":[198],"cases":[201],"88%":[208,211],"(Esophageal":[209],"Neoplasms),":[210],"(Kidney":[212],"Neoplasms)":[213,217],"90%":[215],"(Colon":[216],"top-50":[219],"predicted":[220],"manually":[224],"confirmed":[225],"previous":[227,240],"reports":[229],"literatures.":[231],"Through":[232],"comparison":[234],"between":[236],"other":[239],"case":[243],"studies,":[244],"also":[248],"demonstrates":[249],"could":[252],"serve":[253],"as":[254],"powerful":[256],"tool":[258],"accelerate":[260],"identification":[262],"disease-miRNA":[264]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":37},{"year":2022,"cited_by_count":46},{"year":2021,"cited_by_count":54},{"year":2020,"cited_by_count":64},{"year":2019,"cited_by_count":68},{"year":2018,"cited_by_count":62},{"year":2017,"cited_by_count":27}],"updated_date":"2026-07-19T07:52:34.831488","created_date":"2025-10-10T00:00:00"}
