{"id":"https://openalex.org/W2512618608","doi":"https://doi.org/10.1371/journal.pcbi.1005400","title":"The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt","display_name":"The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt","publication_year":2017,"publication_date":"2017-02-28","ids":{"openalex":"https://openalex.org/W2512618608","doi":"https://doi.org/10.1371/journal.pcbi.1005400","mag":"2512618608","pmid":"https://pubmed.ncbi.nlm.nih.gov/28245235"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1005400","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005400","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005400&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005400&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077371691","display_name":"Sophie Kate Kay","orcid":"https://orcid.org/0000-0002-1623-9265"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophie K. Kay","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, U.K"],"raw_orcid":"https://orcid.org/0000-0002-1623-9265","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060903723","display_name":"Heather A. Harrington","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Heather A. Harrington","raw_affiliation_strings":["Mathematical Institute, University of Oxford, Oxford, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematical Institute, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073453671","display_name":"Sarah Shepherd","orcid":null},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah Shepherd","raw_affiliation_strings":["School of Mathematical Sciences, University of Nottingham, Nottingham, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, University of Nottingham, Nottingham, U.K","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077852430","display_name":"Keith Brennan","orcid":"https://orcid.org/0000-0002-9384-125X"},"institutions":[{"id":"https://openalex.org/I2800776015","display_name":"Wellcome Centre for Cell-Matrix Research","ror":"https://ror.org/0094tm228","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2800776015","https://openalex.org/I28407311","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Keith Brennan","raw_affiliation_strings":["Wellcome Trust Centre for Cell Matrix Research, University of Manchester, Manchester, U.K"],"raw_orcid":"https://orcid.org/0000-0002-9384-125X","affiliations":[{"raw_affiliation_string":"Wellcome Trust Centre for Cell Matrix Research, University of Manchester, Manchester, U.K","institution_ids":["https://openalex.org/I2800776015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003639137","display_name":"Trevor Dale","orcid":"https://orcid.org/0000-0002-4880-9963"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Trevor Dale","raw_affiliation_strings":["School of Biosciences, Cardiff University, Cardiff, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biosciences, Cardiff University, Cardiff, U.K","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015466996","display_name":"James M. Osborne","orcid":"https://orcid.org/0000-0002-5622-0104"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James M. Osborne","raw_affiliation_strings":["School of Mathematics and Statistics, University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0002-5622-0104","affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003271159","display_name":"David J. Gavaghan","orcid":"https://orcid.org/0000-0001-8311-3200"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David J. Gavaghan","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087448925","display_name":"Helen M. Byrne","orcid":"https://orcid.org/0000-0003-1771-5910"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Helen M. Byrne","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, U.K","Mathematical Institute, University of Oxford, Oxford, U.K"],"raw_orcid":"https://orcid.org/0000-0003-1771-5910","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Mathematical Institute, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5087448925"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2577,"currency":"EUR","value_usd":2779},"fwci":6.7292,"has_fulltext":true,"cited_by_count":122,"citation_normalized_percentile":{"value":0.97627067,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"13","issue":"2","first_page":"e1005400","last_page":"e1005400"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10929","display_name":"Wnt/\u03b2-catenin signaling in development and cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10929","display_name":"Wnt/\u03b2-catenin signaling in development and cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hes1","display_name":"HES1","score":0.9242476224899292},{"id":"https://openalex.org/keywords/wnt-signaling-pathway","display_name":"Wnt signaling pathway","score":0.8490899205207825},{"id":"https://openalex.org/keywords/notch-signaling-pathway","display_name":"Notch signaling pathway","score":0.828205943107605},{"id":"https://openalex.org/keywords/cell-fate-determination","display_name":"Cell fate determination","score":0.7410414814949036},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.6520600914955139},{"id":"https://openalex.org/keywords/crosstalk","display_name":"Crosstalk","score":0.6400718092918396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5887387990951538},{"id":"https://openalex.org/keywords/multistability","display_name":"Multistability","score":0.4922732412815094},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4810776710510254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3455759584903717},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.34014371037483215},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16711685061454773},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15331539511680603}],"concepts":[{"id":"https://openalex.org/C2780283210","wikidata":"https://www.wikidata.org/wiki/Q18027301","display_name":"HES1","level":4,"score":0.9242476224899292},{"id":"https://openalex.org/C137620995","wikidata":"https://www.wikidata.org/wiki/Q155769","display_name":"Wnt signaling pathway","level":3,"score":0.8490899205207825},{"id":"https://openalex.org/C161879069","wikidata":"https://www.wikidata.org/wiki/Q904082","display_name":"Notch signaling pathway","level":3,"score":0.828205943107605},{"id":"https://openalex.org/C163952510","wikidata":"https://www.wikidata.org/wiki/Q5058196","display_name":"Cell fate determination","level":4,"score":0.7410414814949036},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.6520600914955139},{"id":"https://openalex.org/C169822122","wikidata":"https://www.wikidata.org/wiki/Q230187","display_name":"Crosstalk","level":2,"score":0.6400718092918396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5887387990951538},{"id":"https://openalex.org/C2776966350","wikidata":"https://www.wikidata.org/wiki/Q6935096","display_name":"Multistability","level":3,"score":0.4922732412815094},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4810776710510254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3455759584903717},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.34014371037483215},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16711685061454773},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15331539511680603},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072056","descriptor_name":"Transcription Factor HES-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072056","descriptor_name":"Transcription Factor HES-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072056","descriptor_name":"Transcription Factor HES-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072056","descriptor_name":"Transcription Factor HES-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072056","descriptor_name":"Transcription Factor HES-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001683","descriptor_name":"Biological Clocks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001683","descriptor_name":"Biological Clocks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001683","descriptor_name":"Biological Clocks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001683","descriptor_name":"Biological Clocks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001683","descriptor_name":"Biological Clocks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020239","descriptor_name":"Receptor Cross-Talk","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020239","descriptor_name":"Receptor Cross-Talk","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020239","descriptor_name":"Receptor Cross-Talk","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020239","descriptor_name":"Receptor Cross-Talk","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020239","descriptor_name":"Receptor Cross-Talk","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":11,"locations":[{"id":"doi:10.1371/journal.pcbi.1005400","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005400","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005400&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:28245235","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28245235","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/cacadafa-a4af-4709-91cd-5a4fa62ec514","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/cacadafa-a4af-4709-91cd-5a4fa62ec514","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kay, S K, Harrington, H A, Shepherd, S, Brennan, K, Dale, T, Osborne, J M, Gavaghan, D J & Byrne, H M 2017, 'The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt', PL o S Computational Biology, vol. 13, no. 2, e1005400. https://doi.org/10.1371/journal.pcbi.1005400","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:http://orca.cardiff.ac.uk:100192","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401195","display_name":"ORCA Online Research @Cardiff (Cardiff University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79510175","host_organization_name":"Cardiff University","host_organization_lineage":["https://openalex.org/I79510175"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:arXiv.org:1608.06146","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1608.06146","pdf_url":"https://arxiv.org/pdf/1608.06146","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/258194","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/258194","pdf_url":"http://hdl.handle.net/11343/258194","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1005400","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005400","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:1b7e3c6312aa4bb1b524780846a7cee7","is_oa":true,"landing_page_url":"https://doaj.org/article/1b7e3c6312aa4bb1b524780846a7cee7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 13, Iss 2, p e1005400 (2017)","raw_type":"article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:711e2c10-88b0-48e1-97bc-5a5e56d0d58e","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:711e2c10-88b0-48e1-97bc-5a5e56d0d58e","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5363986","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5363986","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/626732","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/626732","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1005400","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005400","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005400&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4709654761","display_name":null,"funder_award_id":"EP/K041096/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4853774780","display_name":"LSI Doctoral Training Centres: University of Oxford","funder_award_id":"EP/F500017/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6428962470","display_name":null,"funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7255873218","display_name":null,"funder_award_id":"KUK-C1-013-04","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8059167761","display_name":"Models of spatio-temporal reaction systems with applications to systems and synthetic biology","funder_award_id":"EP/K041096/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G89405795","display_name":"LSI DOCTORAL TRAINING CENTRE - OXFORD","funder_award_id":"EP/D508142/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2512618608.pdf","grobid_xml":"https://content.openalex.org/works/W2512618608.grobid-xml"},"referenced_works_count":137,"referenced_works":["https://openalex.org/W4745154","https://openalex.org/W142882535","https://openalex.org/W180200645","https://openalex.org/W1480035004","https://openalex.org/W1499659548","https://openalex.org/W1544046482","https://openalex.org/W1545394588","https://openalex.org/W1551568855","https://openalex.org/W1560958235","https://openalex.org/W1568038787","https://openalex.org/W1836452880","https://openalex.org/W1946177469","https://openalex.org/W1965157206","https://openalex.org/W1965204519","https://openalex.org/W1966824782","https://openalex.org/W1967929323","https://openalex.org/W1968877576","https://openalex.org/W1970978593","https://openalex.org/W1971327350","https://openalex.org/W1971766851","https://openalex.org/W1973493635","https://openalex.org/W1976359234","https://openalex.org/W1977962361","https://openalex.org/W1978217382","https://openalex.org/W1980415581","https://openalex.org/W1982074654","https://openalex.org/W1984979304","https://openalex.org/W1987220774","https://openalex.org/W1989011685","https://openalex.org/W1989126510","https://openalex.org/W1995158897","https://openalex.org/W1996090115","https://openalex.org/W1996984755","https://openalex.org/W1997840392","https://openalex.org/W2005599373","https://openalex.org/W2006006356","https://openalex.org/W2006419043","https://openalex.org/W2009687189","https://openalex.org/W2012986637","https://openalex.org/W2015839591","https://openalex.org/W2015974087","https://openalex.org/W2016734648","https://openalex.org/W2017593144","https://openalex.org/W2017632960","https://openalex.org/W2018458363","https://openalex.org/W2021766626","https://openalex.org/W2024121049","https://openalex.org/W2024854102","https://openalex.org/W2025187874","https://openalex.org/W2025804504","https://openalex.org/W2029857102","https://openalex.org/W2034592603","https://openalex.org/W2036395023","https://openalex.org/W2036541245","https://openalex.org/W2042082068","https://openalex.org/W2042772659","https://openalex.org/W2043019977","https://openalex.org/W2043854809","https://openalex.org/W2050610306","https://openalex.org/W2051683846","https://openalex.org/W2052438956","https://openalex.org/W2055801476","https://openalex.org/W2056536660","https://openalex.org/W2058221907","https://openalex.org/W2058734213","https://openalex.org/W2060200034","https://openalex.org/W2062004524","https://openalex.org/W2063625751","https://openalex.org/W2063869460","https://openalex.org/W2065191902","https://openalex.org/W2065820769","https://openalex.org/W2066397696","https://openalex.org/W2069107251","https://openalex.org/W2069500900","https://openalex.org/W2072124067","https://openalex.org/W2075472232","https://openalex.org/W2076724997","https://openalex.org/W2078658900","https://openalex.org/W2080231780","https://openalex.org/W2080757588","https://openalex.org/W2080873513","https://openalex.org/W2081471404","https://openalex.org/W2082195162","https://openalex.org/W2088925327","https://openalex.org/W2088969512","https://openalex.org/W2089483555","https://openalex.org/W2089969395","https://openalex.org/W2091496842","https://openalex.org/W2091719870","https://openalex.org/W2093470850","https://openalex.org/W2093531978","https://openalex.org/W2098272219","https://openalex.org/W2100536424","https://openalex.org/W2100568347","https://openalex.org/W2102450454","https://openalex.org/W2102512718","https://openalex.org/W2105579799","https://openalex.org/W2108654247","https://openalex.org/W2109955944","https://openalex.org/W2112499192","https://openalex.org/W2115343689","https://openalex.org/W2117159794","https://openalex.org/W2117453669","https://openalex.org/W2117931389","https://openalex.org/W2120983879","https://openalex.org/W2123100388","https://openalex.org/W2125930394","https://openalex.org/W2129391320","https://openalex.org/W2131448225","https://openalex.org/W2133030708","https://openalex.org/W2136549055","https://openalex.org/W2140062302","https://openalex.org/W2140094325","https://openalex.org/W2142507929","https://openalex.org/W2153906052","https://openalex.org/W2154765411","https://openalex.org/W2154861644","https://openalex.org/W2155195055","https://openalex.org/W2155507705","https://openalex.org/W2155933095","https://openalex.org/W2159171327","https://openalex.org/W2160127198","https://openalex.org/W2161074440","https://openalex.org/W2161977175","https://openalex.org/W2162464438","https://openalex.org/W2163395475","https://openalex.org/W2164712741","https://openalex.org/W2171142519","https://openalex.org/W2171913567","https://openalex.org/W2226529940","https://openalex.org/W2499489623","https://openalex.org/W2524754323","https://openalex.org/W2789682581","https://openalex.org/W2963021707","https://openalex.org/W2964021005","https://openalex.org/W4236895889","https://openalex.org/W4255177710"],"related_works":["https://openalex.org/W2007898372","https://openalex.org/W2073929498","https://openalex.org/W2072966096","https://openalex.org/W1989415637","https://openalex.org/W2158918896","https://openalex.org/W2025187874","https://openalex.org/W1983527388","https://openalex.org/W2332160328","https://openalex.org/W2766565931","https://openalex.org/W2802741350"],"abstract_inverted_index":{"The":[0],"Notch":[1,44,138,157,177,204],"pathway":[2,58,139,268],"plays":[3],"a":[4,16,38,55,94],"vital":[5],"role":[6,132],"in":[7,11,48,67,135,155,179,191,277,289],"determining":[8],"whether":[9],"cells":[10,261],"the":[12,31,43,50,63,77,100,113,131,137,148,156,170,176,186,193,226,234,239,249,266],"intestinal":[13,71,250],"epithelium":[14,251],"adopt":[15],"secretory":[17],"or":[18,107,123],"an":[19,282],"absorptive":[20],"phenotype.":[21],"Cell":[22],"fate":[23,85,209,220,243,276],"specification":[24],"is":[25,73,93,203],"coordinated":[26],"via":[27],"Notch's":[28],"interaction":[29],"with":[30,272],"canonical":[32],"Wnt":[33,46,174,257,267],"pathway.":[34],"Here,":[35],"we":[36],"propose":[37],"new":[39],"mathematical":[40],"model":[41,64,104,164],"of":[42,62,80,102,112,133,166,173,199,208,213,228,233,241,265],"and":[45,75,140,182,206,230,252],"pathways,":[47],"which":[49,98,180],"Hes1":[51,149,187,200,214,235],"promoter":[52,150,188,236],"acts":[53],"as":[54,245],"hub":[56],"for":[57,105,126],"crosstalk.":[59],"Computational":[60],"simulations":[61,165],"can":[65,151],"assist":[66],"understanding":[68],"how":[69],"healthy":[70,279],"tissue":[72],"maintained,":[74],"predict":[76],"likely":[78],"consequences":[79],"biochemical":[81],"knockouts":[82],"upon":[83,175],"cell":[84,167,219,242,275,284],"selection":[86,244],"processes.":[87],"Chemical":[88],"reaction":[89,127],"network":[90,115],"theory":[91],"(CRNT)":[92],"powerful,":[95],"generalised":[96],"framework":[97],"assesses":[99],"capacity":[101],"our":[103],"monostability":[106],"multistability,":[108],"by":[109,263],"analysing":[110],"properties":[111],"underlying":[114],"structure":[116],"without":[117],"recourse":[118],"to":[119,161,218,237,255,285],"specific":[120],"parameter":[121],"values":[122],"functional":[124],"forms":[125],"rates.":[128],"CRNT":[129],"highlights":[130],"\u03b2-catenin":[134],"stabilising":[136,171],"damping":[141],"oscillations,":[142],"demonstrating":[143],"that":[144],"Wnt-mediated":[145,211],"actions":[146],"on":[147,185],"induce":[152],"dynamic":[153],"transitions":[154],"system,":[158],"from":[159],"multistability":[160],"monostability.":[162],"Time-dependent":[163],"pairs":[168],"reveal":[169],"influence":[172],"pathway,":[178],"\u03b2-catenin-":[181],"Dsh-mediated":[183],"action":[184],"are":[189,253],"key":[190],"shaping":[192],"subcellular":[194],"dynamics.":[195],"Where":[196],"Notch-mediated":[197,231],"transcription":[198,212],"dominates,":[201],"there":[202],"oscillation":[205],"maintenance":[207],"flexibility;":[210],"favours":[215],"bistability":[216],"akin":[217],"selection.":[221],"Cells":[222],"could":[223],"therefore":[224],"regulate":[225],"proportion":[227],"Wnt-":[229],"control":[232],"coordinate":[238],"timing":[240],"they":[246],"migrate":[247],"through":[248,270],"subject":[254],"reduced":[256],"stimuli.":[258],"Furthermore,":[259],"mutant":[260],"characterised":[262],"hyperstimulation":[264],"may,":[269],"coupling":[271],"Notch,":[273],"invert":[274],"neighbouring":[278],"cells,":[280],"enabling":[281],"aberrant":[283],"maintain":[286],"its":[287],"neighbours":[288],"mitotically":[290],"active":[291],"states.":[292]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":28},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":8}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
