{"id":"https://openalex.org/W2560264276","doi":"https://doi.org/10.1371/journal.pcbi.1005220","title":"Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist","display_name":"Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist","publication_year":2016,"publication_date":"2016-12-08","ids":{"openalex":"https://openalex.org/W2560264276","doi":"https://doi.org/10.1371/journal.pcbi.1005220","mag":"2560264276","pmid":"https://pubmed.ncbi.nlm.nih.gov/27930676"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1005220","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005220","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005220&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005220&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048416905","display_name":"Brian Drawert","orcid":"https://orcid.org/0000-0002-0543-8189"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian Drawert","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065946530","display_name":"Andreas Hellander","orcid":"https://orcid.org/0000-0001-7273-7923"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Andreas Hellander","raw_affiliation_strings":["Department of Information Technology, Division of Scientific Computing, Uppsala University, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Division of Scientific Computing, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018707480","display_name":"Ben Bales","orcid":"https://orcid.org/0000-0003-3533-250X"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ben Bales","raw_affiliation_strings":["Department of Mechanical Engineering, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108167123","display_name":"D. Banerjee","orcid":"https://orcid.org/0000-0001-5743-7578"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debjani Banerjee","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014689969","display_name":"Giovanni Bellesia","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giovanni Bellesia","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036160602","display_name":"Bernie J. Daigle","orcid":"https://orcid.org/0000-0003-3068-8662"},"institutions":[{"id":"https://openalex.org/I94658018","display_name":"University of Memphis","ror":"https://ror.org/01cq23130","country_code":"US","type":"education","lineage":["https://openalex.org/I94658018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernie J. Daigle","raw_affiliation_strings":["Departments of Biological Sciences and Computer Science, The University of Memphis, Memphis, Tennessee, United States of America"],"affiliations":[{"raw_affiliation_string":"Departments of Biological Sciences and Computer Science, The University of Memphis, Memphis, Tennessee, United States of America","institution_ids":["https://openalex.org/I94658018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040284856","display_name":"Geoffrey Douglas","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Geoffrey Douglas","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113792226","display_name":"Mengyuan Gu","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengyuan Gu","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017605774","display_name":"Anand Gupta","orcid":"https://orcid.org/0009-0009-7210-7572"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anand Gupta","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062472918","display_name":"Stefan Hellander","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Hellander","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107238060","display_name":"Chris Horuk","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Horuk","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073268233","display_name":"Dibyendu Nath","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dibyendu Nath","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046999650","display_name":"Aviral Takkar","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aviral Takkar","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043507626","display_name":"Sheng Wu","orcid":"https://orcid.org/0000-0002-1626-1729"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheng Wu","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087815669","display_name":"Per L\u00f6tstedt","orcid":"https://orcid.org/0000-0003-2143-3078"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Per L\u00f6tstedt","raw_affiliation_strings":["Department of Information Technology, Division of Scientific Computing, Uppsala University, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Division of Scientific Computing, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040516516","display_name":"Chandra Krintz","orcid":"https://orcid.org/0000-0003-4972-0669"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chandra Krintz","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021640058","display_name":"Linda Petzold","orcid":"https://orcid.org/0000-0001-6251-6078"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linda R. Petzold","raw_affiliation_strings":["Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","Department of Mechanical Engineering, University of California, Santa Barbara, Santa Barbara, California, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Department of Mechanical Engineering, University of California, Santa Barbara, Santa Barbara, California, United States of America","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5048416905"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.532,"has_fulltext":true,"cited_by_count":72,"citation_normalized_percentile":{"value":0.95109447,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"12","issue":"12","first_page":"e1005220","last_page":"e1005220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.8348026275634766},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.8225665092468262},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7842303514480591},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5664719939231873},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5538139939308167},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.49528637528419495},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.4771575331687927},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.473773717880249},{"id":"https://openalex.org/keywords/stochastic-modelling","display_name":"Stochastic modelling","score":0.4621264636516571},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4460749924182892},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.42117840051651},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.2856851816177368},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12277790904045105}],"concepts":[{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.8348026275634766},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.8225665092468262},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7842303514480591},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5664719939231873},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5538139939308167},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.49528637528419495},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.4771575331687927},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.473773717880249},{"id":"https://openalex.org/C127491075","wikidata":"https://www.wikidata.org/wiki/Q7617825","display_name":"Stochastic modelling","level":2,"score":0.4621264636516571},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4460749924182892},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.42117840051651},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.2856851816177368},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12277790904045105},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.1005220","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005220","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005220&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:27930676","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27930676","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3829d2nq","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3829d2nq","pdf_url":"https://escholarship.org/content/qt3829d2nq/qt3829d2nq.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology, vol 12, iss 12","raw_type":"article"},{"id":"pmh:oai:osti.gov:1423939","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1423939","pdf_url":"https://www.osti.gov/servlets/purl/1423939","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1005220","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005220","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:18063e6d0322453cbf5a038b4b43f620","is_oa":true,"landing_page_url":"https://doaj.org/article/18063e6d0322453cbf5a038b4b43f620","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 12, p e1005220 (2016)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4108019","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5145134","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/4296512","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Stochastic_Simulation_Service_Bridging_the_Gap_between_the_Computational_Expert_and_the_Biologist/4296512","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:qt3829d2nq","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/3829d2nq","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Drawert, B; Hellander, A; Bales, B; Banerjee, D; Bellesia, G; Daigle, BJ; \u00c2\u00a0et al.(2016). Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLoS Computational Biology, 12(12), e1005220. doi: 10.1371/journal.pcbi.1005220. UC Santa Barbara: Retrieved from: http://www.escholarship.org/uc/item/3829d2nq","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1005220","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005220","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005220&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1052905512","display_name":null,"funder_award_id":"R01-EB014877","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1065316766","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1115769823","display_name":null,"funder_award_id":"W911NF-09-0001","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G2900270719","display_name":null,"funder_award_id":"DMS-1001012","funder_id":"https://openalex.org/F4320337380","funder_display_name":"Division of Mathematical Sciences"},{"id":"https://openalex.org/G3354284890","display_name":null,"funder_award_id":"NIBIB","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3385097580","display_name":null,"funder_award_id":"R01-GM113241","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G385765661","display_name":null,"funder_award_id":"R01-GM113241","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4181972126","display_name":null,"funder_award_id":"GM113241","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4950536974","display_name":null,"funder_award_id":"-0001","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5030867871","display_name":"Collaborative Research: Next-Generation Algorithms for Stochastic Spatial Simulation of Cell Polarization","funder_award_id":"1001012","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6012305574","display_name":null,"funder_award_id":"DE-SC0008975","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6373650527","display_name":null,"funder_award_id":"R01-GM113241","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G663763901","display_name":null,"funder_award_id":"DMS-1001012","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7452299184","display_name":null,"funder_award_id":"W911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G8022615104","display_name":null,"funder_award_id":"R01-EB014877","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"},{"id":"https://openalex.org/G8309681720","display_name":null,"funder_award_id":"W911NF-09-0001","funder_id":"https://openalex.org/F4320338502","funder_display_name":"Institute for Collaborative Biotechnologies"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8998121839","display_name":null,"funder_award_id":"911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"},{"id":"https://openalex.org/F4320337380","display_name":"Division of Mathematical Sciences","ror":"https://ror.org/051fftw81"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"},{"id":"https://openalex.org/F4320338502","display_name":"Institute for Collaborative Biotechnologies","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2560264276.pdf"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W617138896","https://openalex.org/W1968856189","https://openalex.org/W1968877576","https://openalex.org/W1974341035","https://openalex.org/W1974974415","https://openalex.org/W1976337404","https://openalex.org/W1976680692","https://openalex.org/W1978319180","https://openalex.org/W1982903250","https://openalex.org/W1987003260","https://openalex.org/W1992487208","https://openalex.org/W2015188565","https://openalex.org/W2017862866","https://openalex.org/W2022738778","https://openalex.org/W2041715593","https://openalex.org/W2042321087","https://openalex.org/W2044859335","https://openalex.org/W2045243735","https://openalex.org/W2049445311","https://openalex.org/W2076280967","https://openalex.org/W2077346271","https://openalex.org/W2082221311","https://openalex.org/W2091474733","https://openalex.org/W2097240335","https://openalex.org/W2098367419","https://openalex.org/W2102653059","https://openalex.org/W2108493072","https://openalex.org/W2112311198","https://openalex.org/W2115364696","https://openalex.org/W2120196508","https://openalex.org/W2124924107","https://openalex.org/W2126085017","https://openalex.org/W2127740987","https://openalex.org/W2128095813","https://openalex.org/W2131067724","https://openalex.org/W2131732128","https://openalex.org/W2132898564","https://openalex.org/W2134542242","https://openalex.org/W2134759932","https://openalex.org/W2135415614","https://openalex.org/W2140937954","https://openalex.org/W2150640585","https://openalex.org/W2150908245","https://openalex.org/W2155418451","https://openalex.org/W2165526493","https://openalex.org/W2166890927","https://openalex.org/W2291283624","https://openalex.org/W2963911376","https://openalex.org/W2970890556","https://openalex.org/W3103754732","https://openalex.org/W6619224076"],"related_works":["https://openalex.org/W2374561277","https://openalex.org/W2162556737","https://openalex.org/W2380021679","https://openalex.org/W4382790083","https://openalex.org/W2367250903","https://openalex.org/W2091215057","https://openalex.org/W1789343049","https://openalex.org/W2116778801","https://openalex.org/W2064731972","https://openalex.org/W1651572708"],"abstract_inverted_index":{"We":[0,107],"present":[1],"StochSS:":[2],"Stochastic":[3],"Simulation":[4],"as":[5,89],"a":[6,43,47,90,103],"Service,":[7],"an":[8,118],"integrated":[9],"development":[10,122],"environment":[11,93],"for":[12,70],"modeling":[13],"and":[14,19,41,99,111,123],"simulation":[15,65,124],"of":[16,60,113,115,120,128],"both":[17],"deterministic":[18],"discrete":[20],"stochastic":[21],"biochemical":[22],"systems":[23],"in":[24,80],"up":[25],"to":[26,31,38,56],"three":[27],"dimensions.":[28],"An":[29],"easy":[30],"use":[32,114],"graphical":[33],"user":[34],"interface":[35],"enables":[36],"researchers":[37],"quickly":[39],"develop":[40],"simulate":[42],"biological":[44],"model":[45,105,121],"on":[46],"desktop":[48],"or":[49],"laptop,":[50],"which":[51],"can":[52,75,86],"then":[53],"be":[54,87],"expanded":[55],"incorporate":[57],"increasing":[58,126],"levels":[59,127],"complexity.":[61,129],"StochSS":[62,74,85,116],"features":[63],"state-of-the-art":[64],"engines.":[66],"As":[67],"the":[68,81,109],"demand":[69],"computational":[71,97],"power":[72],"increases,":[73],"seamlessly":[76],"scale":[77],"computing":[78],"resources":[79,98],"cloud.":[82],"In":[83],"addition,":[84],"deployed":[88],"multi-user":[91],"software":[92],"where":[94],"collaborators":[95],"share":[96],"exchange":[100],"models":[101],"via":[102],"public":[104],"repository.":[106],"demonstrate":[108],"capabilities":[110],"ease":[112],"with":[117],"example":[119],"at":[125]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}