{"id":"https://openalex.org/W2504005032","doi":"https://doi.org/10.1371/journal.pcbi.1005032","title":"Structure Prediction of RNA Loops with a Probabilistic Approach","display_name":"Structure Prediction of RNA Loops with a Probabilistic Approach","publication_year":2016,"publication_date":"2016-08-05","ids":{"openalex":"https://openalex.org/W2504005032","doi":"https://doi.org/10.1371/journal.pcbi.1005032","mag":"2504005032"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1005032","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005032","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005032&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005032&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101744341","display_name":"Jun Li","orcid":"https://orcid.org/0000-0002-3317-8572"},"institutions":[{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]},{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Li","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038902147","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0003-2338-0395"},"institutions":[{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]},{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384908","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0003-2954-2607"},"institutions":[{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]},{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058504410","display_name":"Wenfei Li","orcid":"https://orcid.org/0000-0003-2679-4075"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenfei Li","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100391662","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0001-5441-0302"},"institutions":[{"id":"https://openalex.org/I4210140493","display_name":"Collaborative Innovation Center of Advanced Microstructures","ror":"https://ror.org/04ttadj76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I126520041","https://openalex.org/I183067930","https://openalex.org/I19820366","https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I2802624667","https://openalex.org/I4210140493","https://openalex.org/I76130692","https://openalex.org/I881766915"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Wang","raw_affiliation_strings":["National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Solid State Microstructures, School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China","institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038902147","https://openalex.org/A5100391662"],"corresponding_institution_ids":["https://openalex.org/I4210140493","https://openalex.org/I881766915"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.7891,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.90577572,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":"8","first_page":"e1005032","last_page":"e1005032"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7828656435012817},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6055405139923096},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5758251547813416},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.510822057723999},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.48291537165641785},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4736282229423523},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46138742566108704},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44726791977882385},{"id":"https://openalex.org/keywords/protein-tertiary-structure","display_name":"Protein tertiary structure","score":0.4367062747478485},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3204646110534668},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29394078254699707},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2836686372756958},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2654324769973755},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2640504240989685},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18873745203018188},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14526113867759705},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1239025890827179},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08493661880493164}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7828656435012817},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6055405139923096},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5758251547813416},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.510822057723999},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.48291537165641785},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4736282229423523},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46138742566108704},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44726791977882385},{"id":"https://openalex.org/C75599170","wikidata":"https://www.wikidata.org/wiki/Q898483","display_name":"Protein tertiary structure","level":2,"score":0.4367062747478485},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3204646110534668},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29394078254699707},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2836686372756958},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2654324769973755},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2640504240989685},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18873745203018188},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14526113867759705},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1239025890827179},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08493661880493164}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1005032","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005032","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005032&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1005032","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005032","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:81814a25fe584d1c81a2fa169e4d7192","is_oa":true,"landing_page_url":"https://doaj.org/article/81814a25fe584d1c81a2fa169e4d7192","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 8, p e1005032 (2016)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/3870705","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Structure_Prediction_of_RNA_Loops_with_a_Probabilistic_Approach/3870705","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:4975501","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4975501","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1005032","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005032","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005032&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.8500000238418579}],"awards":[{"id":"https://openalex.org/G1007721318","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320327518","funder_display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3214160367","display_name":null,"funder_award_id":"No. 11","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3486203383","display_name":null,"funder_award_id":"11574","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G37568934","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4269988857","display_name":null,"funder_award_id":"11574132","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4315230016","display_name":null,"funder_award_id":"2013CB834100","funder_id":"https://openalex.org/F4320327518","funder_display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions"},{"id":"https://openalex.org/G5147788560","display_name":null,"funder_award_id":"11274157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5167091242","display_name":null,"funder_award_id":"No. 1","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6358417216","display_name":null,"funder_award_id":"2013CB834100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8868434306","display_name":null,"funder_award_id":"11174133","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324852","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760"},{"id":"https://openalex.org/F4320327518","display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2504005032.pdf","grobid_xml":"https://content.openalex.org/works/W2504005032.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W142718297","https://openalex.org/W160347429","https://openalex.org/W1966343698","https://openalex.org/W1974338647","https://openalex.org/W1975038294","https://openalex.org/W1976792261","https://openalex.org/W1983534198","https://openalex.org/W1988409793","https://openalex.org/W1991097591","https://openalex.org/W1995164506","https://openalex.org/W2000224444","https://openalex.org/W2012412337","https://openalex.org/W2017838368","https://openalex.org/W2021239285","https://openalex.org/W2024060531","https://openalex.org/W2026807788","https://openalex.org/W2027177938","https://openalex.org/W2029564111","https://openalex.org/W2032913870","https://openalex.org/W2040138931","https://openalex.org/W2046576421","https://openalex.org/W2053150979","https://openalex.org/W2054216276","https://openalex.org/W2059099058","https://openalex.org/W2064480843","https://openalex.org/W2065276821","https://openalex.org/W2074253966","https://openalex.org/W2078621233","https://openalex.org/W2080911376","https://openalex.org/W2084611858","https://openalex.org/W2093404711","https://openalex.org/W2097924797","https://openalex.org/W2099087808","https://openalex.org/W2103894153","https://openalex.org/W2105912570","https://openalex.org/W2106434056","https://openalex.org/W2107334084","https://openalex.org/W2119133259","https://openalex.org/W2121104379","https://openalex.org/W2131046967","https://openalex.org/W2135300233","https://openalex.org/W2136295476","https://openalex.org/W2137427033","https://openalex.org/W2138167486","https://openalex.org/W2138473263","https://openalex.org/W2145477667","https://openalex.org/W2154061444","https://openalex.org/W2157151871","https://openalex.org/W2165779834","https://openalex.org/W2166810745","https://openalex.org/W2259938310","https://openalex.org/W2499278973","https://openalex.org/W2519244818","https://openalex.org/W3105054720","https://openalex.org/W3106154480","https://openalex.org/W4230472026","https://openalex.org/W6643772842","https://openalex.org/W6653361723"],"related_works":["https://openalex.org/W2062166748","https://openalex.org/W2494523064","https://openalex.org/W2393870460","https://openalex.org/W2943623134","https://openalex.org/W2588219639","https://openalex.org/W2097627156","https://openalex.org/W2058276221","https://openalex.org/W4237472082","https://openalex.org/W2171706075","https://openalex.org/W2144953354"],"abstract_inverted_index":{"The":[0,67,89,127],"knowledge":[1],"of":[2,6,32,124],"the":[3,29,115,120],"tertiary":[4,30,137],"structure":[5,31,125,138],"RNA":[7,33,49,76,136],"loops":[8],"is":[9,69,91,107],"important":[10],"for":[11,27,132],"understanding":[12],"their":[13],"functions.":[14],"In":[15],"this":[16],"work":[17],"we":[18],"develop":[19],"an":[20,51,102],"efficient":[21,135],"approach":[22,68,128],"named":[23],"RNApps,":[24],"specifically":[25],"designed":[26],"predicting":[28],"loops,":[34,37,39,77],"including":[35,74],"hairpin":[36],"internal":[38],"and":[40,62,82,93,101,118,134],"multi-way":[41],"junction":[42],"loops.":[43],"It":[44,106],"includes":[45],"a":[46,56,63,72,78,83,96],"probabilistic":[47],"coarse-grained":[48],"model,":[50],"all-atom":[52],"statistical":[53],"energy":[54],"function,":[55],"sequential":[57],"Monte":[58],"Carlo":[59],"growth":[60],"algorithm,":[61],"simulated":[64],"annealing":[65],"procedure.":[66],"tested":[70],"with":[71,95,114],"dataset":[73,85],"nine":[75],"23S":[79],"ribosomal":[80],"RNA,":[81],"large":[84],"containing":[86],"876":[87],"RNAs.":[88],"performance":[90,113],"evaluated":[92],"compared":[94],"homology":[97],"modeling":[98],"based":[99],"predictor":[100],"ab":[103],"initio":[104],"predictor.":[105],"found":[108],"that":[109],"RNApps":[110],"has":[111],"comparable":[112],"former":[116],"one":[117],"outdoes":[119],"latter":[121],"in":[122],"terms":[123],"predictions.":[126],"holds":[129],"great":[130],"promise":[131],"accurate":[133],"prediction.":[139]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2016-08-23T00:00:00"}
