{"id":"https://openalex.org/W2464278521","doi":"https://doi.org/10.1371/journal.pcbi.1004989","title":"Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources","display_name":"Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources","publication_year":2016,"publication_date":"2016-06-23","ids":{"openalex":"https://openalex.org/W2464278521","doi":"https://doi.org/10.1371/journal.pcbi.1004989","mag":"2464278521","pmid":"https://pubmed.ncbi.nlm.nih.gov/27336457"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004989","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004989","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004989&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004989&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048705669","display_name":"Andra Waagmeester","orcid":"https://orcid.org/0000-0001-9773-4008"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andra Waagmeester","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062841937","display_name":"Martina Kutmon","orcid":null},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martina Kutmon","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-7699-8191","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064769212","display_name":"Anders Riutta","orcid":"https://orcid.org/0000-0002-4693-0591"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anders Riutta","raw_affiliation_strings":["Gladstone Institutes, San Francisco, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4693-0591","affiliations":[{"raw_affiliation_string":"Gladstone Institutes, San Francisco, California, United States of America","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007578966","display_name":"Ryan A. Miller","orcid":"https://orcid.org/0000-0003-3477-7443"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ryan Miller","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-3477-7443","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060194743","display_name":"Egon Willighagen","orcid":"https://orcid.org/0000-0001-7542-0286"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Egon L. Willighagen","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-7542-0286","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075750072","display_name":"Chris T. Evelo","orcid":"https://orcid.org/0000-0002-5301-3142"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Chris T. Evelo","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-5301-3142","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070456387","display_name":"Alexander R. Pico","orcid":"https://orcid.org/0000-0001-5706-2163"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander R. Pico","raw_affiliation_strings":["Gladstone Institutes, San Francisco, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gladstone Institutes, San Francisco, California, United States of America","institution_ids":["https://openalex.org/I1321430492"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5075750072"],"corresponding_institution_ids":["https://openalex.org/I34352273"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.4815,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.92771701,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":"6","first_page":"e1004989","last_page":"e1004989"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.9211777448654175},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8142274022102356},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6550706028938293},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6132537126541138},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.5871133804321289},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5164251923561096},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.512607991695404},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.5047503709793091},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.4587978720664978},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.4284718334674835},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.3100477457046509},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.30287736654281616}],"concepts":[{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.9211777448654175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8142274022102356},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6550706028938293},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6132537126541138},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.5871133804321289},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5164251923561096},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.512607991695404},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.5047503709793091},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.4587978720664978},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.4284718334674835},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.3100477457046509},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.30287736654281616}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1004989","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004989","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004989&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:27336457","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27336457","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/f4701105-5dd5-4cf9-9405-2956c242ae61","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/f4701105-5dd5-4cf9-9405-2956c242ae61","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Waagmeester, A, Kutmon, M, Riutta, A, Miller, R, Willighagen, E L, Evelo, C T & Pico, A R 2016, 'Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources', PLoS Computational Biology, vol. 12, no. 6, e1004989. https://doi.org/10.1371/journal.pcbi.1004989","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:c92edffb274447ccbee333af292d9a45","is_oa":true,"landing_page_url":"https://doaj.org/article/c92edffb274447ccbee333af292d9a45","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 6, p e1004989 (2016)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3903641","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4918977","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004989","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004989","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004989&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2766184897","display_name":null,"funder_award_id":"R01-GM100039","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3882081576","display_name":null,"funder_award_id":"no115191","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"}],"funders":[{"id":"https://openalex.org/F4320326631","display_name":"Innovative Medicines Initiative","ror":"https://ror.org/019af4n30"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2464278521.pdf","grobid_xml":"https://content.openalex.org/works/W2464278521.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1913703133","https://openalex.org/W1969040600","https://openalex.org/W1970594207","https://openalex.org/W1975875968","https://openalex.org/W1976892175","https://openalex.org/W1986088036","https://openalex.org/W2022679230","https://openalex.org/W2036407878","https://openalex.org/W2040676413","https://openalex.org/W2046166587","https://openalex.org/W2063028213","https://openalex.org/W2069157810","https://openalex.org/W2070008866","https://openalex.org/W2082621456","https://openalex.org/W2100980426","https://openalex.org/W2107580398","https://openalex.org/W2116238734","https://openalex.org/W2120680184","https://openalex.org/W2126997165","https://openalex.org/W2128763542","https://openalex.org/W2129779647","https://openalex.org/W2136853888","https://openalex.org/W2144086069","https://openalex.org/W2149991291","https://openalex.org/W2155083835","https://openalex.org/W2164298117","https://openalex.org/W2166863889","https://openalex.org/W2177317049","https://openalex.org/W2259172389","https://openalex.org/W2739999456","https://openalex.org/W4237381349","https://openalex.org/W4252232449","https://openalex.org/W6680241514","https://openalex.org/W6948885976"],"related_works":["https://openalex.org/W1550792544","https://openalex.org/W2155929612","https://openalex.org/W199330785","https://openalex.org/W2267627180","https://openalex.org/W2402575682","https://openalex.org/W2396236980","https://openalex.org/W2187569332","https://openalex.org/W98016204","https://openalex.org/W2741022245","https://openalex.org/W2293828766"],"abstract_inverted_index":{"The":[0,23,197],"diversity":[1],"of":[2,128,184,214],"online":[3,46],"resources":[4,77,137,174],"storing":[5],"biological":[6,21,64,136,209],"data":[7,74,210],"in":[8,53,66,84,118,138,163,217],"different":[9],"formats":[10],"provides":[11,26],"a":[12,27,39,58,119,125,182],"challenge":[13],"for":[14,166],"bioinformaticians":[15],"to":[16,29,91,130,133,160,199,203],"integrate":[17],"and":[18,108,116,152,188],"analyse":[19],"their":[20],"data.":[22],"semantic":[24,55,68,140,172,219],"web":[25,56,69,173],"standard":[28,126],"facilitate":[30],"knowledge":[31],"integration":[32,72],"using":[33,86,181],"statements":[34],"built":[35],"as":[36,192],"triples":[37,97,143],"describing":[38],"relation":[40],"between":[41],"two":[42,100],"objects.":[43],"WikiPathways,":[44],"an":[45],"collaborative":[47],"pathway":[48,110,121,201],"resource,":[49],"is":[50,122],"now":[51],"available":[52,154],"the":[54,67,105,109,139,147,176,193,212,218],"through":[57,155],"SPARQL":[59,87,185],"endpoint":[60],"at":[61],"http://sparql.wikipathways.org.":[62],"Having":[63],"pathways":[65,85],"allows":[70],"rapid":[71],"with":[73,124,175],"from":[75],"other":[76,135],"that":[78,103],"contain":[79],"information":[80,202],"about":[81],"elements":[82],"present":[83],"queries.":[88],"In":[89],"order":[90],"convert":[92],"WikiPathways":[93,142,179,216],"content":[94,180],"into":[95,146],"meaningful":[96],"we":[98],"developed":[99],"new":[101,205],"vocabularies":[102],"capture":[104],"graphical":[106],"representation":[107],"logic,":[111],"respectively.":[112],"Each":[113],"gene,":[114],"protein,":[115],"metabolite":[117],"given":[120],"defined":[123],"set":[127],"identifiers":[129],"support":[131],"linking":[132],"several":[134],"web.":[141,220],"were":[144],"loaded":[145],"Open":[148,194],"PHACTS":[149,195],"discovery":[150],"platform":[151],"are":[153],"its":[156],"Web":[157],"API":[158],"(https://dev.openphacts.org/docs)":[159],"be":[161],"used":[162],"various":[164,171],"tools":[165],"drug":[167],"development.":[168],"We":[169],"combined":[170],"newly":[177],"converted":[178],"variety":[183],"query":[186],"types":[187],"third-party":[189],"resources,":[190],"such":[191],"API.":[196],"ability":[198],"use":[200],"form":[204],"links":[206],"across":[207],"diverse":[208],"highlights":[211],"utility":[213],"integrating":[215]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
