{"id":"https://openalex.org/W2355778738","doi":"https://doi.org/10.1371/journal.pcbi.1004943","title":"Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB\u2019s Education Committee)","display_name":"Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB\u2019s Education Committee)","publication_year":2016,"publication_date":"2016-05-13","ids":{"openalex":"https://openalex.org/W2355778738","doi":"https://doi.org/10.1371/journal.pcbi.1004943","mag":"2355778738","pmid":"https://pubmed.ncbi.nlm.nih.gov/27175996"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004943","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004943","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004943&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004943&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069844269","display_name":"Lonnie R. Welch","orcid":"https://orcid.org/0000-0001-6419-9416"},"institutions":[{"id":"https://openalex.org/I4210106879","display_name":"Ohio University","ror":"https://ror.org/01jr3y717","country_code":"US","type":"education","lineage":["https://openalex.org/I4210106879"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lonnie Welch","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, United States of America","institution_ids":["https://openalex.org/I4210106879"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057729973","display_name":"Cath Brooksbank","orcid":"https://orcid.org/0000-0001-9395-7001"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Cath Brooksbank","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051953313","display_name":"Russell Schwartz","orcid":"https://orcid.org/0000-0002-4970-2252"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Schwartz","raw_affiliation_strings":["Department of Biological Sciences and Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences and Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032289769","display_name":"Sarah Morgan","orcid":"https://orcid.org/0000-0001-9528-8323"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah L. Morgan","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-9528-8323","affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080061732","display_name":"Bruno Ga\u00ebta","orcid":"https://orcid.org/0000-0003-4723-4982"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Bruno Gaeta","raw_affiliation_strings":["School of Computer Science and Engineering, UNSW, Sydney, New South Wales, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, UNSW, Sydney, New South Wales, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004851534","display_name":"Alastair M. Kilpatrick","orcid":"https://orcid.org/0000-0002-4795-8799"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alastair M. Kilpatrick","raw_affiliation_strings":["Department of Pediatrics, University of California San Diego, La Jolla, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-4795-8799","affiliations":[{"raw_affiliation_string":"Department of Pediatrics, University of California San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050528093","display_name":"Daniel Mietchen","orcid":"https://orcid.org/0000-0001-9488-1870"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Mietchen","raw_affiliation_strings":["National Institutes of Health, Bethesda, Maryland, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institutes of Health, Bethesda, Maryland, United States of America","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006040025","display_name":"Benjamin L. Moore","orcid":"https://orcid.org/0000-0002-4074-1933"},"institutions":[{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Benjamin L. Moore","raw_affiliation_strings":["MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210158898","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080377820","display_name":"Nicola Mulder","orcid":"https://orcid.org/0000-0003-4905-0941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Nicola Mulder","raw_affiliation_strings":["Computational Biology group, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, Cape Town, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology group, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056721115","display_name":"Mark Pauley","orcid":"https://orcid.org/0000-0003-1308-0321"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Pauley","raw_affiliation_strings":["School of Interdisciplinary Informatics, University of Nebraska at Omaha, Omaha, Nebraska, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Interdisciplinary Informatics, University of Nebraska at Omaha, Omaha, Nebraska, United States of America","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073334733","display_name":"William R. Pearson","orcid":"https://orcid.org/0000-0002-0727-3680"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Pearson","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, School of Medicine, University of Virginia, Charlottesville, Virginia, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, School of Medicine, University of Virginia, Charlottesville, Virginia, United States of America","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051324698","display_name":"Predrag Radivojac","orcid":"https://orcid.org/0000-0002-6769-0793"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Predrag Radivojac","raw_affiliation_strings":["School of Informatics and Computing, Indiana University, Bloomington, Indiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University, Bloomington, Indiana, United States of America","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051408697","display_name":"Naomi Rosenberg","orcid":null},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naomi Rosenberg","raw_affiliation_strings":["Tufts University School of Medicine, Boston, Massachusetts, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tufts University School of Medicine, Boston, Massachusetts, United States of America","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024451170","display_name":"Anne Rosenwald","orcid":"https://orcid.org/0000-0002-0144-8515"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne Rosenwald","raw_affiliation_strings":["Department of Biology, Georgetown University, Washington, D.C., United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Georgetown University, Washington, D.C., United States of America","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024271649","display_name":"Gabriella Rustici","orcid":"https://orcid.org/0000-0003-3085-1271"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gabriella Rustici","raw_affiliation_strings":["School of the Biological Sciences, University of Cambridge, Cambridge Systems Biology Centre, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-3085-1271","affiliations":[{"raw_affiliation_string":"School of the Biological Sciences, University of Cambridge, Cambridge Systems Biology Centre, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032411541","display_name":"Tandy Warnow","orcid":"https://orcid.org/0000-0001-7717-3514"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tandy Warnow","raw_affiliation_strings":["Departments of Computer Science and Bioengineering, University of Illinois, Urbana, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Bioengineering, University of Illinois, Urbana, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5069844269"],"corresponding_institution_ids":["https://openalex.org/I4210106879"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.0893,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.86985309,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":"5","first_page":"e1004943","last_page":"e1004943"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/task-force","display_name":"Task force","score":0.6798868775367737},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5354234576225281},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.44555923342704773},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44148486852645874},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4297640323638916},{"id":"https://openalex.org/keywords/curriculum","display_name":"Curriculum","score":0.42650169134140015},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.20356261730194092},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19982320070266724},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.08020618557929993},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.06377425789833069},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.05525994300842285}],"concepts":[{"id":"https://openalex.org/C2985871740","wikidata":"https://www.wikidata.org/wiki/Q1637368","display_name":"Task force","level":2,"score":0.6798868775367737},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5354234576225281},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.44555923342704773},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44148486852645874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4297640323638916},{"id":"https://openalex.org/C47177190","wikidata":"https://www.wikidata.org/wiki/Q207137","display_name":"Curriculum","level":2,"score":0.42650169134140015},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.20356261730194092},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19982320070266724},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.08020618557929993},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.06377425789833069},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.05525994300842285},{"id":"https://openalex.org/C3116431","wikidata":"https://www.wikidata.org/wiki/Q31728","display_name":"Public administration","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011361","descriptor_name":"Professional Competence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011361","descriptor_name":"Professional Competence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011361","descriptor_name":"Professional Competence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012958","descriptor_name":"Societies, Scientific","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012958","descriptor_name":"Societies, Scientific","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012958","descriptor_name":"Societies, Scientific","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016730","descriptor_name":"Program Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016730","descriptor_name":"Program Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016730","descriptor_name":"Program Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D026683","descriptor_name":"Advisory Committees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026683","descriptor_name":"Advisory Committees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026683","descriptor_name":"Advisory Committees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.1004943","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004943","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004943&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:27175996","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27175996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1004943","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004943","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:046504dc42f24f6fbbd219be1305e667","is_oa":true,"landing_page_url":"https://doaj.org/article/046504dc42f24f6fbbd219be1305e667","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 5, p e1004943 (2016)","raw_type":"article"},{"id":"pmh:oai:localhost:11427/22359","is_oa":true,"landing_page_url":"http://hdl.handle.net/11427/22359","pdf_url":null,"source":{"id":"https://openalex.org/S4306402129","display_name":"Open University of Cape Town (University of Cape Town)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157614274","host_organization_name":"University of Cape Town","host_organization_lineage":["https://openalex.org/I157614274"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology","raw_type":"Journal Article"},{"id":"pmh:oai:open.uct.ac.za:11427/22359","is_oa":true,"landing_page_url":"http://doi.org/10.1371/journal.pcbi.1004943","pdf_url":null,"source":{"id":"https://openalex.org/S4306402129","display_name":"Open University of Cape Town (University of Cape Town)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157614274","host_organization_name":"University of Cape Town","host_organization_lineage":["https://openalex.org/I157614274"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Computational Biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4866758","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4866758","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/4b56f163-0406-4b55-ae8e-06c28febc28f","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/4b56f163-0406-4b55-ae8e-06c28febc28f","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Welch, L, Brooksbank, C, Schwartz, R, Morgan, S L, Gaeta, B, Kilpatrick, A M, Mietchen, D, Moore, B L, Mulder, N, Pauley, M, Pearson, W, Radivojac, P, Rosenberg, N, Rosenwald, A, Rustici, G & Warnow, T 2016, 'Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee)', PLoS Computational Biology, vol. 12, no. 5, pp. e1004943. https://doi.org/10.1371/journal.pcbi.1004943","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/4b56f163-0406-4b55-ae8e-06c28febc28f","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/applying-evaluating-and-refining-bioinformatics-core-competencies-an-update-from-the-curriculum-task-force-of-iscbs-education-committee(4b56f163-0406-4b55-ae8e-06c28febc28f).html","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004943","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004943","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004943&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2355778738.pdf","grobid_xml":"https://content.openalex.org/works/W2355778738.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W756241253","https://openalex.org/W1132990179","https://openalex.org/W1992841970","https://openalex.org/W2044811691","https://openalex.org/W2097340196","https://openalex.org/W2098571599","https://openalex.org/W2165889944","https://openalex.org/W2180990229","https://openalex.org/W2267239606","https://openalex.org/W2312080588","https://openalex.org/W2916982947"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2509787619","https://openalex.org/W2081647779","https://openalex.org/W1748314193","https://openalex.org/W2012220905","https://openalex.org/W2091990684","https://openalex.org/W4237750775","https://openalex.org/W2182904951","https://openalex.org/W2394122226","https://openalex.org/W2013304127"],"abstract_inverted_index":{"The":[0,103,161,388],"Curriculum":[1,290],"Task":[2,291],"Force":[3],"(CTF)":[4],"of":[5,29,37,45,47,61,72,126,147,155,213,217,240,252,257,263,275,284,287,297,307,313,335,401,403,420,443,489,492,523,546,593,602,628,661,675],"ISCB\u2019s":[6,173],"Education":[7,220],"Committee":[8],"seeks":[9],"to":[10,78,136,141,303,369,405,426,448,457,467,502,520,550,558,580,590,611,619,645,653,658,682],"define":[11,304],"curricular":[12],"guidelines":[13,74,133,157],"for":[14,121,145,316,321,398,416,483],"those":[15],"who":[16,500],"educate":[17],"or":[18,295,310,544,565],"train":[19],"bioinformatics":[20,38,127,343],"professionals":[21,499],"at":[22,96,106,172,182,194,208],"all":[23],"career":[24,53],"stages.":[25],"A":[26],"recent":[27],"report":[28],"the":[30,43,59,65,70,73,89,97,107,131,143,156,165,178,183,195,203,209,214,230,250,255,261,273,285,288,379,406,418,421,444,454,464,525,551,612,629,635,643,655,683],"CTF":[31,66,162,204,526],"[1]":[32],"presented":[33],"a":[34,86,206,237,336,399,412,440,509,518,573,578,582],"draft":[35,231],"set":[36,382],"core":[39,49,119,340,381,684],"competencies,":[40],"derived":[41],"from":[42,378,385,530],"results":[44],"surveys":[46],"(1)":[48],"facility":[50],"directors,":[51],"(2)":[52],"opportunities,":[54],"and":[55,124,134,150,193,221,242,247,260,383,409,428,452,478],"(3)":[56],"existing":[57,137,258,608],"curricula.\r\n\r\nSince":[58],"publication":[60],"its":[62],"2014":[63],"report,":[64],"has":[67,471],"focused":[68],"on":[69,116,367,463,625],"application":[71],"in":[75,100,139,236,272,342,424,535],"varied":[76],"contexts":[77,243],"identify":[79,142],"areas":[80,277,432],"where":[81,153,278],"refinement":[82,279],"is":[83,163,394,576,605],"needed.":[84],"As":[85],"first":[87],"step,":[88],"task":[90],"force":[91],"held":[92,205],"an":[93,332,621,671],"open":[94,169],"meeting":[95,108],"ISMB":[98],"conference":[99],"July":[101,200],"2014.":[102],"ideas":[104],"discussed":[105],"spawned":[109],"four":[110],"working":[111,507],"groups":[112],"(WGs),":[113],"which":[114],"focus":[115],"(i)":[117],"defining":[118],"competencies":[120,135,232,377,437,504],"specific":[122,583],"types":[123],"levels":[125,294,312],"training,":[128],"(ii)":[129],"mapping":[130,607],"curriculum":[132],"materials":[138,668,677],"order":[140],"need":[144,501],"development":[146,251],"new":[148,253,264],"materials,":[149],"(iii)":[151],"identifying":[152],"revision":[154],"may":[158,410,512,587],"be":[159,281,301,359,495,513,588,618,680],"valuable.":[160,496],"engaging":[164],"ISCB":[166,184,289],"community":[167],"through":[168],"WG":[170,456],"meetings":[171],"official":[174],"conferences.":[175],"Thus":[176],"far,":[177],"WGs":[179],"have":[180,233,270],"convened":[181],"Great":[185],"Lakes":[186],"Bioinformatics":[187,218],"Conference":[188,197],"(Purdue":[189],"University,":[190],"May":[191],"2015)":[192],"ISMB/ECCB":[196],"(Dublin,":[198],"Ireland,":[199],"2015).":[201,228],"Additionally,":[202],"workshop":[207],"Annual":[210],"General":[211],"Meeting":[212],"Global":[215],"Organization":[216],"Learning,":[219],"Training":[222],"(Cape":[223],"Town,":[224],"South":[225],"Africa,":[226],"November":[227],"Specifically,":[229],"been":[234],"employed":[235],"wide":[238],"range":[239,400],"activities":[241,269,286],"(see":[244],"Table":[245],"1":[246],"[2\u201311]),":[248],"including":[249],"curricula,":[254,259],"analysis":[256],"creation":[262],"roles":[265],"involving":[266],"bioinformatics.":[267],"These":[268],"resulted":[271],"identification":[274],"several":[276,626],"would":[280,300,358,494,633,639],"useful:\r\n\r\n\r\n\r\nTable":[282],"1\r\n\r\nSummary":[283],"Force.\r\n\r\n\r\n\r\n\r\nIdentify":[292],"different":[293,305,311,386,510],"phases":[296,306],"competency.":[298,474],"It":[299,357],"helpful":[302,360,589],"competency":[308,314,319,341,372,396,422,552,584,636],"development,":[309],"appropriate":[315,490],"distinct":[317],"roles.\r\n\r\n\r\nDefine":[318],"profiles":[320,397,423],"disciplines":[322,402],"that":[323,338,438,548,596,632,678],"don\u2019t":[324],"fit":[325,347],"into":[326,348,505],"our":[327,349],"current":[328,350],"silos.":[329],"Bioengineering":[330],"provides":[331],"illustrative":[333],"example":[334],"discipline":[337],"requires":[339],"but":[344],"does":[345],"not":[346,556],"categories.":[351],"There":[352],"are":[353],"almost":[354],"certainly":[355],"others.":[356],"if":[361,572],"we":[362],"could":[363,679],"provide":[364,411,620,670],"some":[365,376],"guidance":[366,462,529],"how":[368,566],"produce":[370],"\u2018hybrid\u2019":[371],"profiles,":[373],"perhaps":[374,486,623],"borrowing":[375],"TF\u2019s":[380,613],"others":[384],"disciplines.":[387],"LifeTrain":[389],"initiative":[390],"(www.lifetrain.eu)":[391],"[2,":[392],"3]":[393],"collecting":[395],"relevance":[404],"biomedical":[407],"sciences":[408],"useful":[413],"resource":[414],"kit":[415],"this.\r\n\r\n\r\nBroaden":[417],"scope":[419],"response":[425],"cutting-edge":[427],"emerging":[429],"research.":[430],"Current":[431],"requiring":[433],"improvement":[434],"include":[435,458],"incorporating":[436],"capture":[439,521],"fundamental":[441],"understanding":[442],"biological":[445],"principles":[446],"central":[447],"analyzing":[449],"biomolecular":[450],"data,":[451],"broadening":[453],"user":[455],"applications":[459],"beyond":[460],"medicine.\r\n\r\n\r\nProvide":[461],"evidence":[465,522],"required":[466,514],"assess":[468],"whether":[469],"someone":[470],"acquired":[472],"each":[473,484],"For":[475,497],"undergraduate,":[476],"Master\u2019s":[477],"PhD":[479],"programs,":[480],"learning":[481],"outcomes":[482],"competency,":[485],"with":[487],"examples":[488,545,592,660],"means":[491],"assessment,":[493],"established":[498],"assimilate":[503],"their":[506,647],"lives,":[508],"approach":[511],"(such":[515],"as":[516,539],"keeping":[517],"portfolio":[519],"competency);":[524],"should":[527,563,568],"seek":[528],"relevant":[531],"professional":[532],"bodies,":[533],"especially":[534],"regulated":[536],"professions":[537],"such":[538],"healthcare.\r\n\r\n\r\nProvide":[540],"indicative":[541],"course":[542,561,574,579,630,641,649,667],"content":[543,610,631],"programs":[547,595],"map":[549],"requirements.":[553,637],"We":[554],"do":[555,597],"wish":[557],"prescribe":[559],"what":[560],"providers":[562,642],"teach":[564,569],"they":[567],"it;":[570],"however,":[571],"provider":[575],"designing":[577],"meet":[581,634],"requirement,":[585],"it":[586],"find":[591],"other":[594],"this":[598,604],"successfully.":[599],"One":[600],"way":[601,616],"achieving":[603],"by":[606],"training":[609,676],"competencies.":[614,685],"Another":[615],"might":[617],"indication,":[622],"based":[624],"courses,":[627],"This":[638],"give":[640],"freedom":[644],"build":[646],"own":[648],"syllabi":[650],"without":[651],"having":[652],"reinvent":[654],"wheel.":[656],"Initiatives":[657],"collect":[659],"Creative":[662],"Commons":[663],"(or":[664],"otherwise":[665],"reusable)":[666],"will":[669],"extremely":[672],"valuable":[673],"bank":[674],"mapped":[681]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4}],"updated_date":"2026-06-03T09:05:47.796612","created_date":"2025-10-10T00:00:00"}
