{"id":"https://openalex.org/W2949687922","doi":"https://doi.org/10.1371/journal.pcbi.1004920","title":"Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics","display_name":"Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics","publication_year":2016,"publication_date":"2016-05-13","ids":{"openalex":"https://openalex.org/W2949687922","doi":"https://doi.org/10.1371/journal.pcbi.1004920","mag":"2949687922","pmid":"https://pubmed.ncbi.nlm.nih.gov/27175778"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004920","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004920","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004920&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004920&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046918535","display_name":"Lisa M. Breckels","orcid":"https://orcid.org/0000-0001-8918-7171"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lisa M. Breckels","raw_affiliation_strings":["Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","Computational Proteomics Unit, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Computational Proteomics Unit, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004572323","display_name":"Sean B. Holden","orcid":"https://orcid.org/0000-0001-7979-1148"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sean B. Holden","raw_affiliation_strings":["Computer Laboratory, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Computer Laboratory, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011092377","display_name":"David Wojnar","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4387153155","display_name":"Quantitative Biology Center","ror":"https://ror.org/00v34f693","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387153155","https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Wojnar","raw_affiliation_strings":["Quantitative Biology Center, Universit\u00e4t T\u00fcbingen, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative Biology Center, Universit\u00e4t T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733","https://openalex.org/I4387153155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026646873","display_name":"Claire M. Mulvey","orcid":"https://orcid.org/0000-0002-2989-2052"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Claire M. Mulvey","raw_affiliation_strings":["Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019486463","display_name":"Andy Christoforou","orcid":"https://orcid.org/0000-0002-3933-1793"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andy Christoforou","raw_affiliation_strings":["Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108622095","display_name":"Arnoud Groen","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Arnoud Groen","raw_affiliation_strings":["Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081730157","display_name":"Matthew Trotter","orcid":"https://orcid.org/0000-0003-3702-915X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Matthew W. B. Trotter","raw_affiliation_strings":["Celgene Institute for Translational Research Europe (CITRE), Sevilla, Spain"],"affiliations":[{"raw_affiliation_string":"Celgene Institute for Translational Research Europe (CITRE), Sevilla, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4387153155","display_name":"Quantitative Biology Center","ror":"https://ror.org/00v34f693","country_code":null,"type":"facility","lineage":["https://openalex.org/I4387153155","https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["Biomolecular Interactions, Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany","Center for Bioinformatics, Universit\u00e4t T\u00fcbingen, T\u00fcbingen, Germany","Quantitative Biology Center, Universit\u00e4t T\u00fcbingen, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Biomolecular Interactions, Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"Center for Bioinformatics, Universit\u00e4t T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":[]},{"raw_affiliation_string":"Quantitative Biology Center, Universit\u00e4t T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733","https://openalex.org/I4387153155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007256008","display_name":"Kathryn S. Lilley","orcid":"https://orcid.org/0000-0003-0594-6543"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kathryn S. Lilley","raw_affiliation_strings":["Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064560423","display_name":"Laurent Gatto","orcid":"https://orcid.org/0000-0002-1520-2268"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Laurent Gatto","raw_affiliation_strings":["Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","Computational Proteomics Unit, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Computational Proteomics Unit, Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5064560423"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2420,"currency":"EUR","value_usd":2609},"fwci":5.9161,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.96718864,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"12","issue":"5","first_page":"e1004920","last_page":"e1004920"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.8238521814346313},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6657083630561829},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.5793681144714355},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5711089372634888},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5556935667991638},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3731614947319031},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29832524061203003},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07896310091018677}],"concepts":[{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.8238521814346313},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6657083630561829},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.5793681144714355},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5711089372634888},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5556935667991638},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3731614947319031},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29832524061203003},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07896310091018677},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1004920","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004920","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004920&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:27175778","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27175778","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1004920","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004920","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:c25995a02a4b4247953bc222acc05e9e","is_oa":true,"landing_page_url":"https://doaj.org/article/c25995a02a4b4247953bc222acc05e9e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 5, p e1004920 (2016)","raw_type":"article"},{"id":"pmh:oai:edoc.mpg.de:733230","is_oa":false,"landing_page_url":"http://edoc.mpg.de/733230","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol, v.12 (2016)","raw_type":"Article"},{"id":"pmh:oai:figshare.com:article/3940479","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Learning_from_Heterogeneous_Data_Sources_An_Application_in_Spatial_Proteomics/3940479","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:4866734","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4866734","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004920","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004920","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004920&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1891427865","display_name":null,"funder_award_id":"108441/Z/15/Z","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"},{"id":"https://openalex.org/G225123221","display_name":null,"funder_award_id":"262067","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G2393153329","display_name":null,"funder_award_id":"262067","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4522999067","display_name":null,"funder_award_id":"BB/L002817/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5422681430","display_name":"Data Fusion and Inductive Transfer for Organelle Proteomics","funder_award_id":"BB/K00137X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5568870434","display_name":null,"funder_award_id":"PRIME","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G645663373","display_name":null,"funder_award_id":"7th Framework","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6868616705","display_name":null,"funder_award_id":"/Z/15/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8092777680","display_name":"A SPATIO-TEMPORAL MAP OF THE DEVELOPMENTAL FLY INTERACTOME","funder_award_id":"BB/L002817/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8561276928","display_name":null,"funder_award_id":"KO-2313/6-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8838961095","display_name":null,"funder_award_id":"BB/K00137X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949687922.pdf","grobid_xml":"https://content.openalex.org/works/W2949687922.grobid-xml"},"referenced_works_count":86,"referenced_works":["https://openalex.org/W34176136","https://openalex.org/W1505191356","https://openalex.org/W1510073064","https://openalex.org/W1547701650","https://openalex.org/W1548849615","https://openalex.org/W1549656520","https://openalex.org/W1560056935","https://openalex.org/W1560107318","https://openalex.org/W1589603734","https://openalex.org/W1932855763","https://openalex.org/W1964098013","https://openalex.org/W1967841763","https://openalex.org/W1973196628","https://openalex.org/W1979511698","https://openalex.org/W1986465827","https://openalex.org/W1991024525","https://openalex.org/W1992991025","https://openalex.org/W1994191737","https://openalex.org/W1999693420","https://openalex.org/W2006211612","https://openalex.org/W2006246187","https://openalex.org/W2008541887","https://openalex.org/W2012672486","https://openalex.org/W2014158063","https://openalex.org/W2019007505","https://openalex.org/W2022202723","https://openalex.org/W2027854381","https://openalex.org/W2029149536","https://openalex.org/W2030567185","https://openalex.org/W2032788274","https://openalex.org/W2036248751","https://openalex.org/W2041399392","https://openalex.org/W2048022984","https://openalex.org/W2055775193","https://openalex.org/W2056983531","https://openalex.org/W2066797568","https://openalex.org/W2069521967","https://openalex.org/W2081927805","https://openalex.org/W2082407716","https://openalex.org/W2089047063","https://openalex.org/W2090557416","https://openalex.org/W2096173332","https://openalex.org/W2097847369","https://openalex.org/W2099245389","https://openalex.org/W2099971677","https://openalex.org/W2103017472","https://openalex.org/W2103688326","https://openalex.org/W2108206279","https://openalex.org/W2109743529","https://openalex.org/W2111127373","https://openalex.org/W2111321252","https://openalex.org/W2113311533","https://openalex.org/W2118978333","https://openalex.org/W2121085194","https://openalex.org/W2121710589","https://openalex.org/W2130494178","https://openalex.org/W2132866237","https://openalex.org/W2145957695","https://openalex.org/W2149159173","https://openalex.org/W2149408487","https://openalex.org/W2152709230","https://openalex.org/W2153349010","https://openalex.org/W2153635508","https://openalex.org/W2155744824","https://openalex.org/W2156355974","https://openalex.org/W2158173168","https://openalex.org/W2160072419","https://openalex.org/W2160697532","https://openalex.org/W2160941422","https://openalex.org/W2160979370","https://openalex.org/W2161444669","https://openalex.org/W2162064024","https://openalex.org/W2162681116","https://openalex.org/W2163884975","https://openalex.org/W2164219008","https://openalex.org/W2164740180","https://openalex.org/W2169400314","https://openalex.org/W2184574721","https://openalex.org/W2272852695","https://openalex.org/W2320412274","https://openalex.org/W2381427208","https://openalex.org/W2434885320","https://openalex.org/W2548695521","https://openalex.org/W2620485168","https://openalex.org/W2739999456","https://openalex.org/W6780052409"],"related_works":["https://openalex.org/W1982829397","https://openalex.org/W2106414650","https://openalex.org/W2347437365","https://openalex.org/W1999412725","https://openalex.org/W2124137418","https://openalex.org/W2391458050","https://openalex.org/W2086860678","https://openalex.org/W3022402204","https://openalex.org/W2114732768","https://openalex.org/W2016639498"],"abstract_inverted_index":{"Sub-cellular":[0],"localisation":[1],"of":[2,31,33,52,85,118,126,131,152,177,191,203],"proteins":[3,34,149],"is":[4,199],"an":[5,165],"essential":[6],"post-translational":[7],"regulatory":[8],"mechanism":[9],"that":[10,96],"can":[11],"be":[12],"assayed":[13],"using":[14],"high-throughput":[15,45],"mass":[16],"spectrometry":[17],"(MS).":[18],"These":[19],"MS-based":[20],"spatial":[21,54,210],"proteomics":[22,55,211],"experiments":[23],"enable":[24],"us":[25],"to":[26,105,110,147,150,164,173],"pinpoint":[27],"the":[28,58,114,124,162,192,204],"sub-cellular":[29,119,153],"distribution":[30],"thousands":[32],"in":[35,44,139],"a":[36,50,80,90,98,175,186],"specific":[37],"system":[38],"under":[39],"controlled":[40],"conditions.":[41],"Recent":[42],"advances":[43],"MS":[46],"methods":[47],"have":[48],"yielded":[49],"plethora":[51],"experimental":[53,133],"data":[56,67,108,145,212],"for":[57,209],"cell":[59,195],"biology":[60],"community.":[61],"Yet,":[62],"there":[63],"are":[64],"many":[65],"third-party":[66],"sources,":[68],"such":[69],"as":[70,201],"immunofluorescence":[71],"microscopy":[72],"or":[73,100],"protein":[74,120],"annotations":[75],"and":[76,82,116,181],"sequences,":[77],"which":[78],"represent":[79],"rich":[81],"vast":[83],"source":[84],"complementary":[86],"information.":[87],"We":[88,122,159],"present":[89],"unique":[91],"transfer":[92],"learning":[93],"classification":[94],"framework":[95],"utilises":[97],"nearest-neighbour":[99],"support":[101],"vector":[102],"machine":[103],"system,":[104],"integrate":[106],"heterogeneous":[107],"sources":[109,146],"considerably":[111],"improve":[112],"on":[113,167],"quantity":[115],"quality":[117],"assignment.":[121],"demonstrate":[123],"utility":[125],"our":[127,183],"algorithms":[128],"through":[129],"evaluation":[130],"five":[132],"datasets,":[134],"from":[135],"four":[136,142],"different":[137,143],"species":[138],"conjunction":[140],"with":[141,155],"auxiliary":[144],"classify":[148,174],"tens":[151],"compartments":[154],"high":[156,188],"generalisation":[157],"accuracy.":[158],"further":[160],"apply":[161],"method":[163],"experiment":[166],"pluripotent":[168],"mouse":[169,193],"embryonic":[170],"stem":[171,194],"cells":[172],"set":[176],"previously":[178],"unknown":[179],"proteins,":[180],"validate":[182],"findings":[184],"against":[185],"recent":[187],"resolution":[189],"map":[190],"proteome.":[196],"The":[197],"methodology":[198],"distributed":[200],"part":[202],"open-source":[205],"Bioconductor":[206],"pRoloc":[207],"suite":[208],"analysis.":[213]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
