{"id":"https://openalex.org/W3189492453","doi":"https://doi.org/10.1371/journal.pcbi.1004763","title":"Ancestral Reconstruction","display_name":"Ancestral Reconstruction","publication_year":2016,"publication_date":"2016-07-12","ids":{"openalex":"https://openalex.org/W3189492453","doi":"https://doi.org/10.1371/journal.pcbi.1004763","mag":"3189492453","pmid":"https://pubmed.ncbi.nlm.nih.gov/27404731"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004763","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004763","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004763&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004763&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050272578","display_name":"Jeffrey B. Joy","orcid":"https://orcid.org/0000-0002-7013-1482"},"institutions":[{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jeffrey B. Joy","raw_affiliation_strings":["BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","University of British Columbia, Department of Medicine, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I4210131951"]},{"raw_affiliation_string":"University of British Columbia, Department of Medicine, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103792525","display_name":"Richard Liang","orcid":"https://orcid.org/0000-0002-6878-3959"},"institutions":[{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Richard H. Liang","raw_affiliation_strings":["BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I4210131951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015018859","display_name":"Rosemary M. McCloskey","orcid":"https://orcid.org/0000-0002-9772-8553"},"institutions":[{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Rosemary M. McCloskey","raw_affiliation_strings":["BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I4210131951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103072720","display_name":"Thuy Nguyen","orcid":"https://orcid.org/0000-0002-7549-1399"},"institutions":[{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"T. Nguyen","raw_affiliation_strings":["BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I4210131951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004110504","display_name":"Art F. Y. Poon","orcid":"https://orcid.org/0000-0003-3779-154X"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210131951","display_name":"AIDS Vancouver","ror":"https://ror.org/02mgny734","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210131951"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Art F. Y. Poon","raw_affiliation_strings":["BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","University of British Columbia, Department of Medicine, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I4210131951"]},{"raw_affiliation_string":"University of British Columbia, Department of Medicine, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004110504"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210131951"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":45.2166,"has_fulltext":true,"cited_by_count":202,"citation_normalized_percentile":{"value":0.99772601,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"12","issue":"7","first_page":"e1004763","last_page":"e1004763"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12467","display_name":"Rangeland Management and Livestock Ecology","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/2308","display_name":"Management, Monitoring, Policy and Law"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12467","display_name":"Rangeland Management and Livestock Ecology","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/2308","display_name":"Management, Monitoring, Policy and Law"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.39352044463157654},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36250078678131104},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29697373509407043}],"concepts":[{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39352044463157654},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36250078678131104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29697373509407043}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005190","descriptor_name":"Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005789","descriptor_name":"Genealogy and Heraldry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005789","descriptor_name":"Genealogy and Heraldry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005789","descriptor_name":"Genealogy and Heraldry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005789","descriptor_name":"Genealogy and Heraldry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004763","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004763","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004763&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:27404731","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27404731","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1004763","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004763","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:6dd08e874cb2407b9f578d870ba9948a","is_oa":true,"landing_page_url":"https://doaj.org/article/6dd08e874cb2407b9f578d870ba9948a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 7, p e1004763 (2016)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3931194","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4942178","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/4013607","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Ancestral_Reconstruction/4013607","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004763","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004763","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004763&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7881097928","display_name":"Fred Hutchinson Cancer Research Center - to develop methods and computational tools in biostatistics, computational biology, and mathematical modeling that will improve the quantitative sc...","funder_award_id":"OPP1110049","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320312238","display_name":"St. Paul's Foundation","ror":"https://ror.org/00axz6z61"},{"id":"https://openalex.org/F4320313549","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793"},{"id":"https://openalex.org/F4320318328","display_name":"Universities Space Research Association","ror":"https://ror.org/043pgqy52"},{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320322551","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3189492453.pdf","grobid_xml":"https://content.openalex.org/works/W3189492453.grobid-xml"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W74509308","https://openalex.org/W182499607","https://openalex.org/W1482160415","https://openalex.org/W1601231658","https://openalex.org/W1665462343","https://openalex.org/W1735656240","https://openalex.org/W1906531069","https://openalex.org/W1916095128","https://openalex.org/W1964516788","https://openalex.org/W1965307886","https://openalex.org/W1970390075","https://openalex.org/W1972189965","https://openalex.org/W1974501001","https://openalex.org/W1985570840","https://openalex.org/W1990157150","https://openalex.org/W1991105970","https://openalex.org/W1997064329","https://openalex.org/W2001082957","https://openalex.org/W2008130573","https://openalex.org/W2013410948","https://openalex.org/W2023346730","https://openalex.org/W2023961800","https://openalex.org/W2026062398","https://openalex.org/W2027351435","https://openalex.org/W2031182775","https://openalex.org/W2033806446","https://openalex.org/W2036097912","https://openalex.org/W2036614038","https://openalex.org/W2038978937","https://openalex.org/W2040708857","https://openalex.org/W2047344793","https://openalex.org/W2048541401","https://openalex.org/W2056265093","https://openalex.org/W2064394080","https://openalex.org/W2065973977","https://openalex.org/W2068386932","https://openalex.org/W2068403678","https://openalex.org/W2078412328","https://openalex.org/W2084842454","https://openalex.org/W2085496329","https://openalex.org/W2088267428","https://openalex.org/W2088735033","https://openalex.org/W2092979861","https://openalex.org/W2093342565","https://openalex.org/W2096484952","https://openalex.org/W2096603900","https://openalex.org/W2099047220","https://openalex.org/W2101095863","https://openalex.org/W2102424972","https://openalex.org/W2104131505","https://openalex.org/W2104579758","https://openalex.org/W2107320771","https://openalex.org/W2109028614","https://openalex.org/W2109363750","https://openalex.org/W2110335151","https://openalex.org/W2111513141","https://openalex.org/W2111762123","https://openalex.org/W2114075279","https://openalex.org/W2118207809","https://openalex.org/W2125121305","https://openalex.org/W2133090982","https://openalex.org/W2134871125","https://openalex.org/W2135611147","https://openalex.org/W2138768660","https://openalex.org/W2139759656","https://openalex.org/W2141447872","https://openalex.org/W2143682170","https://openalex.org/W2144606496","https://openalex.org/W2146058442","https://openalex.org/W2146127418","https://openalex.org/W2149367002","https://openalex.org/W2149660064","https://openalex.org/W2150090955","https://openalex.org/W2150215622","https://openalex.org/W2151062029","https://openalex.org/W2151835344","https://openalex.org/W2152766058","https://openalex.org/W2153163225","https://openalex.org/W2157001909","https://openalex.org/W2160500073","https://openalex.org/W2161444534","https://openalex.org/W2163892779","https://openalex.org/W2164802746","https://openalex.org/W2168696662","https://openalex.org/W2171231095","https://openalex.org/W2171641243","https://openalex.org/W2174335980","https://openalex.org/W2178409599","https://openalex.org/W2207526553","https://openalex.org/W2313218993","https://openalex.org/W2611511275","https://openalex.org/W2933507162","https://openalex.org/W4230364385","https://openalex.org/W4244700801","https://openalex.org/W4244797807","https://openalex.org/W4246186045"],"related_works":["https://openalex.org/W1992782759","https://openalex.org/W3214985509","https://openalex.org/W3157487996","https://openalex.org/W2418104793","https://openalex.org/W2073568292","https://openalex.org/W2316833920","https://openalex.org/W2914878354","https://openalex.org/W2013106815","https://openalex.org/W4213036952","https://openalex.org/W2047778144"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":35},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
