{"id":"https://openalex.org/W2215294916","doi":"https://doi.org/10.1371/journal.pcbi.1004631","title":"Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics","display_name":"Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics","publication_year":2015,"publication_date":"2015-12-10","ids":{"openalex":"https://openalex.org/W2215294916","doi":"https://doi.org/10.1371/journal.pcbi.1004631","mag":"2215294916","pmid":"https://pubmed.ncbi.nlm.nih.gov/26657165"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004631","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004631","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004631&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004631&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015194904","display_name":"Akli Ben Imeddourene","orcid":null},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210150317","display_name":"Laboratoire de Biologie et Pharmacologie Appliqu\u00e9e","ror":"https://ror.org/03njrcx45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I11559806","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210150317"]},{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Akli Ben Imeddourene","raw_affiliation_strings":["LBPA, CNRS, ENS Cachan, Universit\u00e9 Paris-Saclay, Cachan, France","Universit\u00e9 Pierre et Marie Curie, Paris, France","UPMC - Universit\u00e9 Pierre et Marie Curie - Paris 6 (4 place Jussieu - 75005 Paris - France)","LBPA - Laboratoire de Biologie et de Pharmacologie Appliqu\u00e9e (61 AVENUE DU PRESIDENT WILSON 94235 CACHAN CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"LBPA, CNRS, ENS Cachan, Universit\u00e9 Paris-Saclay, Cachan, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I11559806","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 Pierre et Marie Curie, Paris, France","institution_ids":["https://openalex.org/I39804081"]},{"raw_affiliation_string":"UPMC - Universit\u00e9 Pierre et Marie Curie - Paris 6 (4 place Jussieu - 75005 Paris - France)","institution_ids":["https://openalex.org/I39804081"]},{"raw_affiliation_string":"LBPA - Laboratoire de Biologie et de Pharmacologie Appliqu\u00e9e (61 AVENUE DU PRESIDENT WILSON 94235 CACHAN CEDEX - France)","institution_ids":["https://openalex.org/I4210150317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002006737","display_name":"Ahmad Elbahnsi","orcid":"https://orcid.org/0000-0002-5356-2440"},"institutions":[{"id":"https://openalex.org/I4210146074","display_name":"Analyse, G\u00e9om\u00e9trie et Mod\u00e9lisation","ror":"https://ror.org/03qgt2624","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210141950","https://openalex.org/I4210142324","https://openalex.org/I4210146074"]},{"id":"https://openalex.org/I4387153379","display_name":"Laboratoire de Physique Th\u00e9orique et Mod\u00e9lisation","ror":"https://ror.org/05nhcdk38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210142324","https://openalex.org/I4387153379"]},{"id":"https://openalex.org/I4210109170","display_name":"Laboratoire de Physique Th\u00e9orique","ror":"https://ror.org/01w0hda30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I196454796","https://openalex.org/I4210098836","https://openalex.org/I4210109170","https://openalex.org/I4388446414","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210148552","display_name":"Equipes Traitement de l'Information et Syst\u00e8mes","ror":"https://ror.org/0592ata02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210142324","https://openalex.org/I4210148552","https://openalex.org/I4210159245","https://openalex.org/I86175216"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210116171","display_name":"3M (France)","ror":"https://ror.org/02f12sz84","country_code":"FR","type":"company","lineage":["https://openalex.org/I1340755506","https://openalex.org/I4210116171"]},{"id":"https://openalex.org/I4210150317","display_name":"Laboratoire de Biologie et Pharmacologie Appliqu\u00e9e","ror":"https://ror.org/03njrcx45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I11559806","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210150317"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ahmad Elbahnsi","raw_affiliation_strings":["LBPA, CNRS, ENS Cachan, Universit\u00e9 Paris-Saclay, Cachan, France","LPTM, UMR 8089, Universit\u00e9 de Cergy-Pontoise, Cergy-Pontoise, France","LPTM - UMR 8089 - Laboratoire de Physique Th\u00e9orique et Mod\u00e9lisation (Universit\u00e9 de Cergy-Pontoise 2 avenue Adolphe Chauvin, Pontoise 95302 Cergy-Pontoise cedex - France)","LBPA - Laboratoire de Biologie et de Pharmacologie Appliqu\u00e9e (61 AVENUE DU PRESIDENT WILSON 94235 CACHAN CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"LBPA, CNRS, ENS Cachan, Universit\u00e9 Paris-Saclay, Cachan, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I11559806","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LPTM, UMR 8089, Universit\u00e9 de Cergy-Pontoise, Cergy-Pontoise, France","institution_ids":["https://openalex.org/I4210148552","https://openalex.org/I4210146074","https://openalex.org/I4210116171","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LPTM - UMR 8089 - Laboratoire de Physique Th\u00e9orique et Mod\u00e9lisation (Universit\u00e9 de Cergy-Pontoise 2 avenue Adolphe Chauvin, Pontoise 95302 Cergy-Pontoise cedex - France)","institution_ids":["https://openalex.org/I4210109170","https://openalex.org/I4210142324","https://openalex.org/I4387153379"]},{"raw_affiliation_string":"LBPA - Laboratoire de Biologie et de Pharmacologie Appliqu\u00e9e (61 AVENUE DU PRESIDENT WILSON 94235 CACHAN CEDEX - France)","institution_ids":["https://openalex.org/I4210150317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001394564","display_name":"Marc Gu\u00e9roult","orcid":"https://orcid.org/0000-0003-1036-7490"},"institutions":[{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Gu\u00e9roult","raw_affiliation_strings":["UMR S665, INSERM, Universit\u00e9 Paris Diderot, INTS, Paris, France","DSIMB - Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques (6 rue Alexandre Cabanel, 75739 Paris cedex 15 - France)"],"affiliations":[{"raw_affiliation_string":"UMR S665, INSERM, Universit\u00e9 Paris Diderot, INTS, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I169173203"]},{"raw_affiliation_string":"DSIMB - Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques (6 rue Alexandre Cabanel, 75739 Paris cedex 15 - France)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073345998","display_name":"C. Oguey","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116171","display_name":"3M (France)","ror":"https://ror.org/02f12sz84","country_code":"FR","type":"company","lineage":["https://openalex.org/I1340755506","https://openalex.org/I4210116171"]},{"id":"https://openalex.org/I4387153379","display_name":"Laboratoire de Physique Th\u00e9orique et Mod\u00e9lisation","ror":"https://ror.org/05nhcdk38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210142324","https://openalex.org/I4387153379"]},{"id":"https://openalex.org/I4210146074","display_name":"Analyse, G\u00e9om\u00e9trie et Mod\u00e9lisation","ror":"https://ror.org/03qgt2624","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210141950","https://openalex.org/I4210142324","https://openalex.org/I4210146074"]},{"id":"https://openalex.org/I4210109170","display_name":"Laboratoire de Physique Th\u00e9orique","ror":"https://ror.org/01w0hda30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I196454796","https://openalex.org/I4210098836","https://openalex.org/I4210109170","https://openalex.org/I4388446414","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210148552","display_name":"Equipes Traitement de l'Information et Syst\u00e8mes","ror":"https://ror.org/0592ata02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210142324","https://openalex.org/I4210148552","https://openalex.org/I4210159245","https://openalex.org/I86175216"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Oguey","raw_affiliation_strings":["LPTM, UMR 8089, Universit\u00e9 de Cergy-Pontoise, Cergy-Pontoise, France","LPTM - UMR 8089 - Laboratoire de Physique Th\u00e9orique et Mod\u00e9lisation (Universit\u00e9 de Cergy-Pontoise 2 avenue Adolphe Chauvin, Pontoise 95302 Cergy-Pontoise cedex - France)"],"affiliations":[{"raw_affiliation_string":"LPTM, UMR 8089, Universit\u00e9 de Cergy-Pontoise, Cergy-Pontoise, France","institution_ids":["https://openalex.org/I4210148552","https://openalex.org/I4210146074","https://openalex.org/I4210116171","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LPTM - UMR 8089 - Laboratoire de Physique Th\u00e9orique et Mod\u00e9lisation (Universit\u00e9 de Cergy-Pontoise 2 avenue Adolphe Chauvin, Pontoise 95302 Cergy-Pontoise cedex - France)","institution_ids":["https://openalex.org/I4210109170","https://openalex.org/I4210142324","https://openalex.org/I4387153379"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086200893","display_name":"Nicolas Foloppe","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Nicolas Foloppe","raw_affiliation_strings":["Cambridge, United Kingdom","CAM - University of Cambridge [UK] (The Old Schools, Trinity Lane, Cambridge CB2 1TN - United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Cambridge, United Kingdom","institution_ids":[]},{"raw_affiliation_string":"CAM - University of Cambridge [UK] (The Old Schools, Trinity Lane, Cambridge CB2 1TN - United Kingdom)","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089438108","display_name":"Brigitte Hartmann","orcid":"https://orcid.org/0000-0002-0611-8806"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210150317","display_name":"Laboratoire de Biologie et Pharmacologie Appliqu\u00e9e","ror":"https://ror.org/03njrcx45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I11559806","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210150317"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Brigitte Hartmann","raw_affiliation_strings":["LBPA, CNRS, ENS Cachan, Universit\u00e9 Paris-Saclay, Cachan, France","LBPA - Laboratoire de Biologie et de Pharmacologie Appliqu\u00e9e (61 AVENUE DU PRESIDENT WILSON 94235 CACHAN CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"LBPA, CNRS, ENS Cachan, Universit\u00e9 Paris-Saclay, Cachan, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I11559806","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LBPA - Laboratoire de Biologie et de Pharmacologie Appliqu\u00e9e (61 AVENUE DU PRESIDENT WILSON 94235 CACHAN CEDEX - France)","institution_ids":["https://openalex.org/I4210150317"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5086200893","https://openalex.org/A5089438108"],"corresponding_institution_ids":["https://openalex.org/I11559806","https://openalex.org/I1294671590","https://openalex.org/I241749","https://openalex.org/I277688954","https://openalex.org/I4210150317"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2092,"currency":"EUR","value_usd":2256},"fwci":1.3357,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.80812839,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"12","first_page":"e1004631","last_page":"e1004631"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5545769333839417},{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.5466315746307373},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.48503345251083374},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.4758431911468506},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.4703120291233063},{"id":"https://openalex.org/keywords/observable","display_name":"Observable","score":0.450735479593277},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4438450038433075},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43573716282844543},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4252217710018158},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3906106948852539},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3800289034843445},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.36021143198013306},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26436376571655273},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2403607964515686},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.1410858929157257},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.11514005064964294}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5545769333839417},{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.5466315746307373},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.48503345251083374},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.4758431911468506},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.4703120291233063},{"id":"https://openalex.org/C32848918","wikidata":"https://www.wikidata.org/wiki/Q845789","display_name":"Observable","level":2,"score":0.450735479593277},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4438450038433075},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43573716282844543},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4252217710018158},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3906106948852539},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3800289034843445},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.36021143198013306},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26436376571655273},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2403607964515686},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.1410858929157257},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.11514005064964294},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004631","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004631","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004631&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:26657165","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26657165","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-01274067v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01274067","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2015, 11 (12), pp.e1004631. &#x27E8;10.1371/journal.pcbi.1004631&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:6976a8e8185c48eab154ac6ca98fdbf7","is_oa":true,"landing_page_url":"https://doaj.org/article/6976a8e8185c48eab154ac6ca98fdbf7","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 12, p e1004631 (2015)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/1622096","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Simulations_Meet_Experiment_to_Reveal_New_Insights_into_DNA_Intrinsic_Mechanics_/1622096","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:4689557","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4689557","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004631","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004631","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004631&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4973929103","display_name":null,"funder_award_id":"funding","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"}],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320326256","display_name":"Grand \u00c9quipement National De Calcul Intensif","ror":"https://ror.org/0010d1q40"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2215294916.pdf","grobid_xml":"https://content.openalex.org/works/W2215294916.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W17343045","https://openalex.org/W591212242","https://openalex.org/W1030900860","https://openalex.org/W1526944695","https://openalex.org/W1778449545","https://openalex.org/W1967737979","https://openalex.org/W1968122824","https://openalex.org/W1971762037","https://openalex.org/W1973435665","https://openalex.org/W1975725773","https://openalex.org/W1975945758","https://openalex.org/W1976499671","https://openalex.org/W1976682620","https://openalex.org/W1980722147","https://openalex.org/W1983177130","https://openalex.org/W1983814953","https://openalex.org/W1983874017","https://openalex.org/W1989824648","https://openalex.org/W1994454235","https://openalex.org/W1996075279","https://openalex.org/W1998119100","https://openalex.org/W2000583319","https://openalex.org/W2009083100","https://openalex.org/W2013848842","https://openalex.org/W2015830320","https://openalex.org/W2018409978","https://openalex.org/W2018761712","https://openalex.org/W2026597179","https://openalex.org/W2032453263","https://openalex.org/W2032973906","https://openalex.org/W2034073691","https://openalex.org/W2034472075","https://openalex.org/W2034823280","https://openalex.org/W2035266068","https://openalex.org/W2037773996","https://openalex.org/W2043203479","https://openalex.org/W2047422719","https://openalex.org/W2050333027","https://openalex.org/W2050843661","https://openalex.org/W2050904973","https://openalex.org/W2053837540","https://openalex.org/W2056378638","https://openalex.org/W2061029954","https://openalex.org/W2062219589","https://openalex.org/W2062909955","https://openalex.org/W2063955472","https://openalex.org/W2066004760","https://openalex.org/W2067174909","https://openalex.org/W2068962035","https://openalex.org/W2070534047","https://openalex.org/W2076497939","https://openalex.org/W2078043522","https://openalex.org/W2081762928","https://openalex.org/W2082168427","https://openalex.org/W2091765441","https://openalex.org/W2092256741","https://openalex.org/W2103636724","https://openalex.org/W2113089013","https://openalex.org/W2124618141","https://openalex.org/W2131288855","https://openalex.org/W2135184237","https://openalex.org/W2136729627","https://openalex.org/W2144062946","https://openalex.org/W2150981663","https://openalex.org/W2152406248","https://openalex.org/W2155926374","https://openalex.org/W2157089275","https://openalex.org/W2165032708","https://openalex.org/W2166058140","https://openalex.org/W2314569547","https://openalex.org/W2314977235","https://openalex.org/W2317538483","https://openalex.org/W2322717217","https://openalex.org/W2330907883","https://openalex.org/W2337120805","https://openalex.org/W2401200928","https://openalex.org/W2763755907","https://openalex.org/W2951392003","https://openalex.org/W4255144534"],"related_works":["https://openalex.org/W1994680671","https://openalex.org/W2000283393","https://openalex.org/W2002320543","https://openalex.org/W2150232912","https://openalex.org/W2054940838","https://openalex.org/W2061947244","https://openalex.org/W3124098632","https://openalex.org/W4321855183","https://openalex.org/W15793755","https://openalex.org/W3106170641"],"abstract_inverted_index":{"The":[0],"accurate":[1],"prediction":[2],"of":[3,8,21,42,77,94,116,131,139,195,202],"the":[4,19,33,37,50,60,71,75,81,132,137,150,155,162,180,185],"structure":[5],"and":[6,30,86,128,146,160,167,190],"dynamics":[7],"DNA":[9,26,34,101,197],"remains":[10],"a":[11,91,112,175,199],"major":[12],"challenge":[13],"in":[14,28,32,55,104,118,143],"computational":[15],"biology":[16],"due":[17],"to":[18,47,59,69,157],"dearth":[20],"precise":[22],"experimental":[23,133],"information":[24],"on":[25,99],"free":[27],"solution":[29],"limitations":[31],"force-fields":[35,43,84],"underpinning":[36],"simulations.":[38],"A":[39],"new":[40,127,193],"generation":[41],"has":[44],"been":[45],"developed":[46],"better":[48],"represent":[49],"sequence-dependent":[51],"B-DNA":[52,72,117],"intrinsic":[53,196],"mechanics,":[54,198],"particular":[56],"with":[57,80],"respect":[58],"BI":[61],"\u2194":[62],"BII":[63],"backbone":[64,165],"equilibrium,":[65],"which":[66,172],"is":[67],"essential":[68],"understand":[70],"properties.":[73],"Here,":[74],"performance":[76],"MD":[78],"simulations":[79,189],"newly":[82],"updated":[83],"Parmbsc0\u03b5\u03b6OLI":[85],"CHARMM36":[87],"was":[88],"tested":[89],"against":[90],"large":[92],"ensemble":[93],"recent":[95],"NMR":[96],"data":[97],"collected":[98],"four":[100],"dodecamers":[102],"involved":[103],"nucleosome":[105],"positioning.":[106],"We":[107],"find":[108],"impressive":[109],"progress":[110],"towards":[111],"coherent,":[113],"realistic":[114],"representation":[115,125],"solution,":[119],"despite":[120],"residual":[121],"shortcomings.":[122],"This":[123],"improved":[124],"allows":[126],"deeper":[129],"interpretation":[130],"observables,":[134],"including":[135],"regarding":[136],"behavior":[138],"facing":[140],"phosphate":[141],"groups":[142],"complementary":[144,181],"dinucleotides,":[145],"their":[147],"modulation":[148],"by":[149],"sequence.":[151],"It":[152],"also":[153],"provides":[154],"opportunity":[156],"extensively":[158],"revisit":[159],"refine":[161],"coupling":[163],"between":[164,188],"states":[166],"inter":[168],"base":[169],"pair":[170],"parameters,":[171],"emerges":[173],"as":[174],"common":[176],"theme":[177],"across":[178],"all":[179],"dinucleotides.":[182],"In":[183],"sum,":[184],"global":[186],"agreement":[187],"experiment":[191],"reveals":[192],"aspects":[194],"key":[200],"component":[201],"DNA-protein":[203],"recognition.":[204]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
