{"id":"https://openalex.org/W1692744135","doi":"https://doi.org/10.1371/journal.pcbi.1004472","title":"Functional Basis of Microorganism Classification","display_name":"Functional Basis of Microorganism Classification","publication_year":2015,"publication_date":"2015-08-28","ids":{"openalex":"https://openalex.org/W1692744135","doi":"https://doi.org/10.1371/journal.pcbi.1004472","mag":"1692744135","pmid":"https://pubmed.ncbi.nlm.nih.gov/26317871"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004472","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004472","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004472&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004472&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069971220","display_name":"Chengsheng Zhu","orcid":"https://orcid.org/0000-0002-4849-1246"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chengsheng Zhu","raw_affiliation_strings":["Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028531834","display_name":"Tom O. Delmont","orcid":"https://orcid.org/0000-0001-7053-7848"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210145913","display_name":"Laboratoire Amp\u00e8re","ror":"https://ror.org/04xbczw40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210095849","https://openalex.org/I4210145913","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I112936343","display_name":"\u00c9cole Centrale de Lyon","ror":"https://ror.org/05s6rge65","country_code":"FR","type":"education","lineage":["https://openalex.org/I112936343","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Tom O. Delmont","raw_affiliation_strings":["Environmental Microbial Genomics, Laboratoire Ampere, \u00c9cole Centrale de Lyon, Universit\u00e9 de Lyon, Ecully, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Microbial Genomics, Laboratoire Ampere, \u00c9cole Centrale de Lyon, Universit\u00e9 de Lyon, Ecully, France","institution_ids":["https://openalex.org/I4210145913","https://openalex.org/I112936343","https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066932758","display_name":"Timothy M. Vogel","orcid":"https://orcid.org/0000-0002-9542-3246"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210145913","display_name":"Laboratoire Amp\u00e8re","ror":"https://ror.org/04xbczw40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210095849","https://openalex.org/I4210145913","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I112936343","display_name":"\u00c9cole Centrale de Lyon","ror":"https://ror.org/05s6rge65","country_code":"FR","type":"education","lineage":["https://openalex.org/I112936343","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Timothy M. Vogel","raw_affiliation_strings":["Environmental Microbial Genomics, Laboratoire Ampere, \u00c9cole Centrale de Lyon, Universit\u00e9 de Lyon, Ecully, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Microbial Genomics, Laboratoire Ampere, \u00c9cole Centrale de Lyon, Universit\u00e9 de Lyon, Ecully, France","institution_ids":["https://openalex.org/I4210145913","https://openalex.org/I112936343","https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089912529","display_name":"Yana Bromberg","orcid":"https://orcid.org/0000-0002-8351-0844"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Yana Bromberg","raw_affiliation_strings":["Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America; Institute for Advanced Study, Technische Universit\u00e4t M\u00fcnchen, Garching, Germany","Institute for Advanced Study, Technische Universit\u00e4t M\u00fcnchen, Garching, Germany","Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America; Institute for Advanced Study, Technische Universit\u00e4t M\u00fcnchen, Garching, Germany","institution_ids":[]},{"raw_affiliation_string":"Institute for Advanced Study, Technische Universit\u00e4t M\u00fcnchen, Garching, Germany","institution_ids":["https://openalex.org/I62916508","https://openalex.org/I4210137766"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, United States of America","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069971220","https://openalex.org/A5089912529"],"corresponding_institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4210137766","https://openalex.org/I62916508"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.4094,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.88743783,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"11","issue":"8","first_page":"e1004472","last_page":"e1004472"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.8878745436668396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6512762308120728},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5609073638916016},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.5271598696708679},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5262134075164795},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5099571943283081},{"id":"https://openalex.org/keywords/taxonomic-rank","display_name":"Taxonomic rank","score":0.49078163504600525},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.4806629419326782},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4569885730743408},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.41162723302841187},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3650273084640503},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3065609335899353},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.212429016828537},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20964348316192627},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1015845537185669}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.8878745436668396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6512762308120728},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5609073638916016},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.5271598696708679},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5262134075164795},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5099571943283081},{"id":"https://openalex.org/C189592816","wikidata":"https://www.wikidata.org/wiki/Q427626","display_name":"Taxonomic rank","level":3,"score":0.49078163504600525},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.4806629419326782},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4569885730743408},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.41162723302841187},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3650273084640503},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3065609335899353},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.212429016828537},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20964348316192627},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1015845537185669},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1004472","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004472","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004472&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:26317871","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26317871","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:HAL:hal-01589154v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01589154","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2015, 11 (8), ⟨10.1371/journal.pcbi.1004472⟩","raw_type":"Journal articles"},{"id":"pmh:oai:alma.01RUT_INST:11665137220004646","is_oa":false,"landing_page_url":"https://scholarship.libraries.rutgers.edu/esploro/outputs/journalArticle/Functional-Basis-of-Microorganism-Classification/991031665792304646","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:4cff5b3127ea4ac4a186108bb6f96923","is_oa":true,"landing_page_url":"https://doaj.org/article/4cff5b3127ea4ac4a186108bb6f96923","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 8, p e1004472 (2015)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3541132","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4552647","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/1526834","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Functional_Basis_of_Microorganism_Classification_/1526834","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004472","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004472","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004472&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G1833366854","display_name":null,"funder_award_id":"291763","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7032823791","display_name":null,"funder_award_id":"291763","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G8345540293","display_name":null,"funder_award_id":"291763","funder_id":"https://openalex.org/F4320323383","funder_display_name":"Technische Universit\u00e4t M\u00fcnchen"},{"id":"https://openalex.org/G8771350828","display_name":null,"funder_award_id":"GBMF2807","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320309249","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1692744135.pdf","grobid_xml":"https://content.openalex.org/works/W1692744135.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1485044783","https://openalex.org/W1519987066","https://openalex.org/W1525036029","https://openalex.org/W1595983562","https://openalex.org/W1604281503","https://openalex.org/W1903350689","https://openalex.org/W1969989184","https://openalex.org/W1977520966","https://openalex.org/W1997272729","https://openalex.org/W1998824347","https://openalex.org/W2004548026","https://openalex.org/W2020350008","https://openalex.org/W2025887685","https://openalex.org/W2028695285","https://openalex.org/W2032279931","https://openalex.org/W2033403400","https://openalex.org/W2042765728","https://openalex.org/W2045194639","https://openalex.org/W2052414895","https://openalex.org/W2055043387","https://openalex.org/W2062399100","https://openalex.org/W2078969200","https://openalex.org/W2080791625","https://openalex.org/W2082046285","https://openalex.org/W2094176393","https://openalex.org/W2095759721","https://openalex.org/W2096525273","https://openalex.org/W2097107919","https://openalex.org/W2098386120","https://openalex.org/W2106265368","https://openalex.org/W2115595474","https://openalex.org/W2121564430","https://openalex.org/W2125910575","https://openalex.org/W2126321303","https://openalex.org/W2128114769","https://openalex.org/W2128777911","https://openalex.org/W2130449683","https://openalex.org/W2130956021","https://openalex.org/W2131681506","https://openalex.org/W2132598047","https://openalex.org/W2133114654","https://openalex.org/W2134375163","https://openalex.org/W2135509883","https://openalex.org/W2136969710","https://openalex.org/W2138122982","https://openalex.org/W2139436782","https://openalex.org/W2141885858","https://openalex.org/W2142773144","https://openalex.org/W2148563040","https://openalex.org/W2150244407","https://openalex.org/W2154184384","https://openalex.org/W2155606054","https://openalex.org/W2162000763","https://openalex.org/W2169048918","https://openalex.org/W2941307081","https://openalex.org/W2951665412","https://openalex.org/W2988279241","https://openalex.org/W3021587187","https://openalex.org/W3099768174","https://openalex.org/W3199943451","https://openalex.org/W4212865600","https://openalex.org/W4231897523","https://openalex.org/W4236336743","https://openalex.org/W4242397891","https://openalex.org/W4250297812","https://openalex.org/W4255087501","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2258998699","https://openalex.org/W3013644380","https://openalex.org/W2074740504","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W1998405066","https://openalex.org/W2171737904"],"abstract_inverted_index":{"Correctly":[0],"identifying":[1],"nearest":[2],"\"neighbors\"":[3],"of":[4,26,56,62,98,124,144,156,217,234,242],"a":[5,76,96,204,222],"given":[6],"microorganism":[7,79],"is":[8,34,92,154,178,221],"important":[9,212],"in":[10,181,245],"industrial":[11],"and":[12,28,131,177,210,229,248],"clinical":[13],"applications":[14],"where":[15],"close":[16],"relationships":[17,102],"imply":[18],"similar":[19],"treatment.":[20],"Microbial":[21],"classification":[22,47,80,139,153],"based":[23,94],"on":[24,95,237],"similarity":[25,63,161],"physiological":[27],"genetic":[29],"organism":[30,84,101,152,160,175,183,189],"traits":[31,143],"(polyphasic":[32],"similarity)":[33],"experimentally":[35],"difficult":[36],"and,":[37],"arguably,":[38],"subjective.":[39],"Evolutionary":[40],"relatedness,":[41],"inferred":[42],"from":[43],"phylogenetic":[44,253],"markers,":[45],"facilitates":[46],"but":[48,115],"does":[49],"not":[50],"guarantee":[51],"functional":[52,125,240],"identity":[53],"between":[54,64],"members":[55],"the":[57,104,112,116,122,157,193,239,243],"same":[58],"taxon":[59],"or":[60],"lack":[61],"different":[65,129],"taxa.":[66],"Using":[67],"over":[68],"thirteen":[69],"hundred":[70],"sequenced":[71],"bacterial":[72],"genomes,":[73],"we":[74],"built":[75],"novel":[77],"function-based":[78],"scheme,":[81],"functional-repertoire":[82],"similarity-based":[83],"network":[85,97],"(FuSiON;":[86],"flattened":[87],"to":[88,147,165,191,207],"fusion).":[89],"Our":[90,149,201],"scheme":[91],"phenetic,":[93],"quantitatively":[99],"defined":[100,174],"across":[103],"known":[105],"prokaryotic":[106],"space.":[107],"It":[108],"correlates":[109],"significantly":[110],"with":[111,252],"current":[113],"taxonomy,":[114],"observed":[117],"discrepancies":[118],"reveal":[119],"both":[120],"(1)":[121],"inconsistency":[123],"diversity":[126],"levels":[127],"among":[128],"taxa":[130],"(2)":[132],"an":[133],"(unsurprising)":[134],"bias":[135],"towards":[136],"prioritizing,":[137],"for":[138,214,226],"purposes,":[140],"relatively":[141],"minor":[142],"particular":[145],"interest":[146],"humans.":[148],"dynamic":[150],"network-based":[151],"independent":[155],"arbitrary":[158],"pairwise":[159],"cut-offs":[162],"traditionally":[163],"applied":[164],"establish":[166],"taxonomic":[167],"identity.":[168],"Instead,":[169],"it":[170],"reveals":[171],"natural,":[172],"functionally":[173],"groupings":[176],"thus":[179],"robust":[180],"handling":[182],"diversity.":[184],"Additionally,":[185],"fusion":[186],"can":[187],"use":[188],"meta-data":[190],"highlight":[192],"specific":[194],"environmental":[195],"factors":[196],"that":[197],"drive":[198],"microbial":[199,218],"diversification.":[200],"approach":[202],"provides":[203],"complementary":[205],"view":[206],"cladistic":[208],"assignments":[209],"holds":[211],"clues":[213],"further":[215],"exploration":[216],"lifestyles.":[219],"Fusion":[220],"more":[223],"practical":[224],"fit":[225],"biomedical,":[227],"industrial,":[228],"ecological":[230],"applications,":[231],"as":[232],"many":[233],"these":[235],"rely":[236],"understanding":[238],"capabilities":[241],"microbes":[244],"their":[246],"environment":[247],"are":[249],"less":[250],"concerned":[251],"descent.":[254]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}